BAC Information

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BAC

Clone NameB6Ng01-033C18
Chromosome11 (Build37)
Map Location 72,240,186 - 72,413,589
singlet/doubletdoublet
Overlap geneGgt6, Mybbp1a, 9830002I17Rik, LOC432577
Upstream gene9230020A06Rik, Wscd1, Aipl1, 6720460F02Rik, Pitpnm3, 4933427D14Rik, Txnl5, Med31, 4930563E22Rik, Slc13a5, Fbxo39, LOC628100, Tekt1, D130058I21Rik
Downstream geneUbe2g1, Ankfy1, Cyb5d2, Zzef1, LOC627119, Atp2a3, P2rx1, LOC100043309, Camkk1, 1200014J11Rik, Itgae, Gsg2, P2rx5, Tmem93, Tax1bp3, Ctns, Carkl, Trpv1, Trpv3, Aspa, Spata22, Olfr20, Olfr376, Olfr377-ps1, Olfr1, Olfr75-ps1, Olfr378, Olfr379-ps1, Olfr380, Olfr381, Olfr382, Olfr383-ps1, Olfr385
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-033C18.bB6Ng01-033C18.g
ACCDH862302DH862303
length1,074657
definitionDH862302|Mus musculus domesticus DNA, BAC clone: B6Ng01-033C18, 5' end.DH862303|Mus musculus domesticus DNA, BAC clone: B6Ng01-033C18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,240,186 - 72,240,854)(72,412,933 - 72,413,589)
sequence
gaattcacacaagactagaaatagtctaatgaaaagctcttgtcacccat
caatcactgcattgagtcctcagaaagatcacacattagtagcagaatta
attaatctcaaaataaagtcttcctaccataataaggcttcaaaggaagt
ctgaatggatcaagagcattcacaagtgttttacaacatgccagaatgaa
acccaacactctacaaaggagtatatcaaaatacagcactcagcaacata
aaatttacagcatctagtacccatttaaaaatcaccaggtaggctgagga
tatagctcagctggtagaatactcccctagtctgcacaaaaccctgcatt
atgggctggagagatagagaacagttaagagtcctggttgctctcacaga
aggcacagattcaattcccagcatccgtctacttgctggctcatgaccat
ctgtgcctccagttccaggcgatctgatgcctacttctggcctctcttag
gcgttaggtacatacatggtgctcagatatgcctgcaggcaaaaacacac
atacacactaagtaaactttaaagccatgcattcatttaatctccacttc
atcaactgagtataggggcacgtgtctgtaaacccaggaaacagaaggaa
aaggattagaaattcaaggtcatgtccagctacactgtgaatttgatacc
atcctgggatgaagaagaccctggagagatggctcagtgattaagagcac
tgtctgcaattccagaagccctgagttcaattttcagtaatcatatgatg
gctcatctataatgggatctgatgccctcttctggcctgaaggtgtacat
gcagatagagcactcatacataaaataatttaaaaatttaaaacaaacaa
acccccaataaacaacacacacaacccaaagacaaattatttttttaaaa
ggggagaggaagactggagagatggctcaacagtaagagcctgaacattg
cttctaaaccctctagtgaggtcttgagttcatccagcaaccacatgtgg
ctcaaccatctctatgggatctga
gaattccaggacagccagggctacacagagaaaccctgtctcgaaaaacg
aaacaaaacaaagaaaagaactgactgctttccccgagatcatgagttca
aatcccagcaaccacattgtggctcacaaccatccataatgagaaacaaa
taaaaaacctatggcctggagcgagcagggccaggcaagagagagaaggg
aaggagggggaggaataaaatttaaaaaataaataaataaaataaaatag
ttgttgtggagatatgaatgagcgttaagagcacttgaggatcttctaga
agatcttccagagccaccttctggcctctataagcaccaggcatgcatgt
gctacacatacatattcaggcactcacacataaacatttttgaaatagtg
acttctgtgtatgtgtgagtgtctgcacttatgtatgtgtaccatgtgag
tctgaaagcccatgggggtcagatgaggtcgctagatccctggaactgaa
gttacaaacagttctgagctgctctgtggatgctaggaactgagtctcag
acatctgcaatagcaacaagtgtgtttagcaatctttattctttattttg
agacatggtctcactatatagccctgtttgacctagatctctctatgcag
acttggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_72240186_72240854
seq2: B6Ng01-033C18.b_472_1119

seq1  GTCTACTTGCTGGCTCATGACCATCTGTGCCTCCAGTTCCAGGCGATCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACTTGCTGGCTCATGACCATCTGTGCCTCCAGTTCCAGGCGATCTG  50

seq1  ATGCCTACTTCTGGCCTCTCTTAGGCGTTAGGTACATACATGGTGCTCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTACTTCTGGCCTCTCTTAGGCGTTAGGTACATACATGGTGCTCAG  100

seq1  ATATGCCTGCAGGCAAAAACACACATACACACTAAGTAAACTTTAAAGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCCTGCAGGCAAAAACACACATACACACTAAGTAAACTTTAAAGCC  150

seq1  ATGCATTCATTTAATCTCCACTTCATCAACTGAGTATAGGGGCACGTGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATTCATTTAATCTCCACTTCATCAACTGAGTATAGGGGCACGTGTC  200

seq1  TGTAAACCCAGGAAACAGAAGGAAAAGGATTAGAAATTCAAGGTCATGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAACCCAGGAAACAGAAGGAAAAGGATTAGAAATTCAAGGTCATGTC  250

seq1  CAGCTACACTGTGAATTTGATACCATCCTGGGATGAAGAAGACCCTGGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTACACTGTGAATTTGATACCATCCTGGGATGAAGAAGACCCTGGAG  300

seq1  AGATGGCTCAGTGATTAAGAGCACTGTCTGCAATTCCAGAAGCCCTGAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGCTCAGTGATTAAGAGCACTGTCTGCAATTCCAGAAGCCCTGAGT  350

seq1  TCAATTTTCAGTAATCATATGATGGCTCATCTATAATGGGATCTGATGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTTTCAGTAATCATATGATGGCTCATCTATAATGGGATCTGATGCC  400

seq1  CTCTTCTGGCCTGAAGGTGTACATGCAGATAGAGCACTCATACATAAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTGGCCTGAAGGTGTACATGCAGATAGAGCACTCATACATAAAAT  450

seq1  AAATTTAAAAATTTAAAAACAAACAAAACCCCCAATAAACAACAACAACA  500
       ||||||||||||| ||||||||| |||||||||||||||||| |||   
seq2  -AATTTAAAAATTT-AAAACAAAC-AAACCCCCAATAAACAAC-ACA--C  494

seq1  ACAACCCAAAGACAAAATTATTTTTTTAAAAAGGGGGAGAGGAAGACTGG  550
      ||||||||||||| |||||||||||||||||  |||||||||||||||||
seq2  ACAACCCAAAGAC-AAATTATTTTTTTAAAA--GGGGAGAGGAAGACTGG  541

seq1  AGAGATGGCTCAGCAGTTAAGAGCACTGACACATTGCTCTAAAACCCTTC  600
      |||||||||||| ||| ||||||| |||| ||||||||   |||||| ||
seq2  AGAGATGGCTCAACAG-TAAGAGC-CTGA-ACATTGCTTCTAAACCC-TC  587

seq1  TAGTAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAGC  650
      |||| |||||| ||||||||    ||||||||||||| ||||||  || |
seq2  TAGT-GAGGTCTTGAGTTCA---TCCAGCAACCACAT-GTGGCT--CAAC  630

seq1  CATCTCTAATGGGATCTGA  669
      ||||||| |||||||||||
seq2  CATCTCT-ATGGGATCTGA  648

seq1: chr11_72412933_72413589
seq2: B6Ng01-033C18.g_67_723 (reverse)

seq1  GCCAAGTCTGCATAGAGAGATCTAGGTCAAACAGGGCTATATAGTGAGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGTCTGCATAGAGAGATCTAGGTCAAACAGGGCTATATAGTGAGAC  50

seq1  CATGTCTCAAAATAAAGAATAAAGATTGCTAAACACACTTGTTGCTATTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCTCAAAATAAAGAATAAAGATTGCTAAACACACTTGTTGCTATTG  100

seq1  CAGATGTCTGAGACTCAGTTCCTAGCATCCACAGAGCAGCTCAGAACTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGTCTGAGACTCAGTTCCTAGCATCCACAGAGCAGCTCAGAACTGT  150

seq1  TTGTAACTTCAGTTCCAGGGATCTAGCGACCTCATCTGACCCCCATGGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAACTTCAGTTCCAGGGATCTAGCGACCTCATCTGACCCCCATGGGC  200

seq1  TTTCAGACTCACATGGTACACATACATAAGTGCAGACACTCACACATACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGACTCACATGGTACACATACATAAGTGCAGACACTCACACATACA  250

seq1  CAGAAGTCACTATTTCAAAAATGTTTATGTGTGAGTGCCTGAATATGTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGTCACTATTTCAAAAATGTTTATGTGTGAGTGCCTGAATATGTAT  300

seq1  GTGTAGCACATGCATGCCTGGTGCTTATAGAGGCCAGAAGGTGGCTCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGCACATGCATGCCTGGTGCTTATAGAGGCCAGAAGGTGGCTCTGG  350

seq1  AAGATCTTCTAGAAGATCCTCAAGTGCTCTTAACGCTCATTCATATCTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCTTCTAGAAGATCCTCAAGTGCTCTTAACGCTCATTCATATCTCC  400

seq1  ACAACAACTATTTTATTTTATTTATTTATTTTTTAAATTTTATTCCTCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAACTATTTTATTTTATTTATTTATTTTTTAAATTTTATTCCTCCC  450

seq1  CCTCCTTCCCTTCTCTCTCTTGCCTGGCCCTGCTCGCTCCAGGCCATAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTTCCCTTCTCTCTCTTGCCTGGCCCTGCTCGCTCCAGGCCATAGG  500

seq1  TTTTTTATTTGTTTCTCATTATGGATGGTTGTGAGCCACAATGTGGTTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTATTTGTTTCTCATTATGGATGGTTGTGAGCCACAATGTGGTTGC  550

seq1  TGGGATTTGAACTCATGATCTCGGGGAAAGCAGTCAGTTCTTTTCTTTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATTTGAACTCATGATCTCGGGGAAAGCAGTCAGTTCTTTTCTTTGT  600

seq1  TTTGTTTCGTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTCGTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCT  650

seq1  GGAATTC  657
      |||||||
seq2  GGAATTC  657