BAC Information

Click to search

BAC

Clone NameB6Ng01-033K15
Chromosome4 (Build37)11 (Build37)
Map Location 27,066,576 - 27,067,6833,316,576 - 3,317,321
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneManea, Bhmt-ps1, LOC665079, Gng2-ps1
Downstream geneLOC100040691, Tpm3-rs2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-033K15.bB6Ng01-033K15.g
ACCDH862648DH862649
length1,088748
definitionDH862648|Mus musculus domesticus DNA, BAC clone: B6Ng01-033K15, 5' end.DH862649|Mus musculus domesticus DNA, BAC clone: B6Ng01-033K15, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(27,066,576 - 27,067,683)(3,316,576 - 3,317,321)
sequence
gaattctatgtaggagtgcagctgtaagtccctccagacttacagtctct
aagacatctgagtaggtattacatctaaacttgctaaggaaagttgctgc
atttagccaaaatatgtcacaagaaaacaattatcatttcttttcccaga
tacttaaaaatgtaaagctttaaaagtagtattttatctgtgcttgaatc
attttgtagacaatacaaatttaatgtgaagctagccatgtaaatgtcaa
tagtggtaccctctggagagagggacagtcaaggttgagtgaggttttgt
tctgatttcatattactacacagtgccatgataagcatgcattttagaac
tgaaaaattaaaagaaactgagtttaaaatattcacaataaattttctat
atgcatatttaagctgtgatatgggagtctaaatattaaaacacatctgt
acaaatttaattaacatagctgggtaacttagttgcaaacttctggcaca
aaggcaaaggctaactaaattctatcaagagagaacctaaaaatcacatg
tgagtttatttctggccaattgcacaaagtgctaggcacttaagatgttg
ttttgaaatgagtccctgaaatcaagtgtgacttttcaaatctttagtta
ccttacaaagaagtttggaggacatactcatcaacagttaacacagtaaa
tgtttgtttttttgttttttttcatttttccttttgtaatgtgttagatc
cagtgtggaacaactacatagcaactgaatatgagttgtggcctatgagt
tggcagttgtggcttatgagtatctctctttatccagtgtggactgttta
gtcaggattgcctattgtttttgttcaattatttggcattaacacaagat
gtcattgctctctccggtaatggacctcaaaccatttggaaagcagtttt
attcgcagatcagaagctttagtacaaattaatggatgcttttagcctag
agagcaatgacaggggcagatatctgaatgatccattcagcaaattttaa
atctattttcatgtgtatatcgacgattatttgactta
gaattcaagattgactgttatgctttagggctgatacaagaataacagga
caggttgccctgccctaggctacagaagcctgagtcattctctcacagaa
cttgcccagagaaactggaggctttctcaggtcagcccagctgcatgtag
aacactactaccctcagaagccattgtcctttttaaaaaaggttacgacg
ctgactccatctgatggtgaaaactccttgaatgtgtgctgagcccaggg
atacatgaggctcctgagcaagcaacccctctctggtgacataacacaag
gacctcagagatacagtgtggtcgacattccttagtcttcctcgtgttga
tttgttcttgaacttataagctgtttcctctgaatctgattgtgggattg
tgttgacaggcaggagaatagtcacctgctgagacggttcttgctctgcc
catcaggcctcatcttagaaatgtcacctctccctggagacctcagcagg
gcagcaagataagcgtctactggacccttttgttcacttctccaacaccc
actgccccagcaataacaaactgggagaaagccttgcctggtgatttttc
tagatgtgactctatataatctctggaaccctagaccttgaggatggtga
aagagccctcctcctcacagcacaatccttacctgccaacgccagtgtta
gtgtttgaaatgaatacagtatgagtattgtgtaggaggggtggtttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_27066576_27067683
seq2: B6Ng01-033K15.b_47_1134

seq1  GAATTCTATGTAGGAGTGCAGCTGTAAGTCCCTCCAGACTTACAGTCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGTAGGAGTGCAGCTGTAAGTCCCTCCAGACTTACAGTCTCT  50

seq1  AAGACATCTGAGTAGGTATTACATCTAAACTTGCTAAGGAAAGTTGCTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACATCTGAGTAGGTATTACATCTAAACTTGCTAAGGAAAGTTGCTGC  100

seq1  ATTTAGCCAAAATATGTCACAAGAAAACAATTATCATTTCTTTTCCCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGCCAAAATATGTCACAAGAAAACAATTATCATTTCTTTTCCCAGA  150

seq1  TACTTAAAAATGTAAAGCTTTAAAAGTAGTATTTTATCTGTGCTTGAATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTAAAAATGTAAAGCTTTAAAAGTAGTATTTTATCTGTGCTTGAATC  200

seq1  ATTTTGTAGACAATACAAATTTAATGTGAAGCTAGCCATGTAAATGTCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTAGACAATACAAATTTAATGTGAAGCTAGCCATGTAAATGTCAA  250

seq1  TAGTGGTACCCTCTGGAGAGAGGGACAGTCAAGGTTGAGTGAGGTTTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGGTACCCTCTGGAGAGAGGGACAGTCAAGGTTGAGTGAGGTTTTGT  300

seq1  TCTGATTTCATATTACTACACAGTGCCATGATAAGCATGCATTTTAGAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATTTCATATTACTACACAGTGCCATGATAAGCATGCATTTTAGAAC  350

seq1  TGAAAAATTAAAAGAAACTGAGTTTAAAATATTCACAATAAATTTTCTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAATTAAAAGAAACTGAGTTTAAAATATTCACAATAAATTTTCTAT  400

seq1  ATGCATATTTAAGCTGTGATATGGGAGTCTAAATATTAAAACACATCTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATATTTAAGCTGTGATATGGGAGTCTAAATATTAAAACACATCTGT  450

seq1  ACAAATTTAATTAACATAGCTGGGTAACTTAGTTGCAAACTTCTGGCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATTTAATTAACATAGCTGGGTAACTTAGTTGCAAACTTCTGGCACA  500

seq1  AAGGCAAAGGCTAACTAAATTCTATCAAGAGAGAACCTAAAAATCACATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAAAGGCTAACTAAATTCTATCAAGAGAGAACCTAAAAATCACATG  550

seq1  TGAGTTTATTTCTGGCCAATTGCACAAAGTGCTAGGCACTTAAGATGTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTTATTTCTGGCCAATTGCACAAAGTGCTAGGCACTTAAGATGTTG  600

seq1  TTTTGAAATGAGTCCCTGAAATCAAGTGTGACTTTTCAAATCTTTAGTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAAATGAGTCCCTGAAATCAAGTGTGACTTTTCAAATCTTTAGTTA  650

seq1  CCTTACAAAGAAGTTTGGAGGACATACTCATCAACAGTTAACACAGTAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTACAAAGAAGTTTGGAGGACATACTCATCAACAGTTAACACAGTAAA  700

seq1  TGTTTGTTTTTTTGTTTTTTTTCATTTTTCCTTTTGTAATGTGTTAGATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTTTTTTGTTTTTTTTCATTTTTCCTTTTGTAATGTGTTAGATC  750

seq1  CAGTGTGGAACAACTACATAGCAACTGAATATGAGTTGTGGCCTATGAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTGGAACAACTACATAGCAACTGAATATGAGTTGTGGCCTATGAGT  800

seq1  TGGCAGTTGTGGCTTATGAGTATCTCTCTTTATCCAGTGTGGACTGTTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGTTGTGGCTTATGAGTATCTCTCTTTATCCAGTGTGGACTGTTTA  850

seq1  GTCAGGATTGCCTATTGTTTTTGTTCAATTATTTGGCATTCAACACAAGA  900
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GTCAGGATTGCCTATTGTTTTTGTTCAATTATTTGGCATT-AACACAAGA  899

seq1  TGTCATTGCCCTCTCCGGTAATGGACCTCAGAACCATTTGGAAAAGCAGT  950
      ||||||||| |||||||||||||||||||| |||||||||| ||||||||
seq2  TGTCATTGCTCTCTCCGGTAATGGACCTCA-AACCATTTGG-AAAGCAGT  947

seq1  TTTATTCGCAGGATCAGAAGCTTTAGGTACAAATTAATGGATGCTTTTAG  1000
      |||||||||| |||||||||||||| ||||||||||||||||||||||||
seq2  TTTATTCGCA-GATCAGAAGCTTTA-GTACAAATTAATGGATGCTTTTAG  995

seq1  CCTAGAGAAAGCAATGACAGGGGGCAGATAATCTGAAATGATTCAATTCA  1050
      |||||||  |||||||||| ||||||||| ||||| ||||| || |||||
seq2  CCTAGAG--AGCAATGACA-GGGGCAGAT-ATCTG-AATGA-TCCATTCA  1039

seq1  GGCAAAATTTTAAATCTATTTTTCATGTGGTATATCAGAACGATTTTAAT  1100
      |   |||||||||||||| ||||||||| |||||||   ||||||   ||
seq2  G--CAAATTTTAAATCTA-TTTTCATGT-GTATATC--GACGATT---AT  1080

seq1  TTGACTTA  1108
      ||||||||
seq2  TTGACTTA  1088

seq1: chr11_3316576_3317321
seq2: B6Ng01-033K15.g_69_816 (reverse)

seq1  CAAACCA-CCCTCCTACACAATACTCATACTGTATTCATTTC-AACACTA  48
      ||||||| |||||||||||||||||||||||||||||||||| |||||||
seq2  CAAACCACCCCTCCTACACAATACTCATACTGTATTCATTTCAAACACTA  50

seq1  ACACTGGCGTTGGCAGGTAAGGATTGTGCTGTGAGGAGGAGGGCTCTTTC  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGGCGTTGGCAGGTAAGGATTGTGCTGTGAGGAGGAGGGCTCTTTC  100

seq1  ACCATCCTCAAGGTCTAGGGTTCCAGAGATTATATAGAGTCACATCTAGA  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCCTCAAGGTCTAGGGTTCCAGAGATTATATAGAGTCACATCTAGA  150

seq1  AAAATCACCAGGCAAGGCTTTCTCCCAGTTTGTTATTGCTGGGGCAGTGG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCACCAGGCAAGGCTTTCTCCCAGTTTGTTATTGCTGGGGCAGTGG  200

seq1  GTGTTGGAGAAGTGAACAAAAGGGTCCAGTAGACGCTTATCTTGCTGCCC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGGAGAAGTGAACAAAAGGGTCCAGTAGACGCTTATCTTGCTGCCC  250

seq1  TGCTGAGGTCTCCAGGGAGAGGTGACATTTCTAAGATGAGGCCTGATGGG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAGGTCTCCAGGGAGAGGTGACATTTCTAAGATGAGGCCTGATGGG  300

seq1  CAGAGCAAGAACCGTCTCAGCAGGTGACTATTCTCCTGCCTGTCAACACA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCAAGAACCGTCTCAGCAGGTGACTATTCTCCTGCCTGTCAACACA  350

seq1  ATCCCACAATCAGATTCAGAGGAAACAGCTTATAAGTTCAAGAACAAATC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCACAATCAGATTCAGAGGAAACAGCTTATAAGTTCAAGAACAAATC  400

seq1  AACACGAGGAAGACTAAGGAATGTCGACCACACTGTATCTCTGAGGTCCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACGAGGAAGACTAAGGAATGTCGACCACACTGTATCTCTGAGGTCCT  450

seq1  TGTGTTATGTCACCAGAGAGGGGTTGCTTGCTCAGGAGCCTCATGTATCC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTATGTCACCAGAGAGGGGTTGCTTGCTCAGGAGCCTCATGTATCC  500

seq1  CTGGGCTCAGCACACATTCAAGGAGTTTTCACCATCAGATGGAGTCAGCG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCTCAGCACACATTCAAGGAGTTTTCACCATCAGATGGAGTCAGCG  550

seq1  TCGTAACCTTTTTTAAAAAGGACAATGGCTTCTGAGGGTAGTAGTGTTCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTAACCTTTTTTAAAAAGGACAATGGCTTCTGAGGGTAGTAGTGTTCT  600

seq1  ACATGCAGCTGGGCTGACCTGAGAAAGCCTCCAGTTTCTCTGGGCAAGTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCAGCTGGGCTGACCTGAGAAAGCCTCCAGTTTCTCTGGGCAAGTT  650

seq1  CTGTGAGAGAATGACTCAGGCTTCTGTAGCCTAGGGCAGGGCAACCTGTC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAGAGAATGACTCAGGCTTCTGTAGCCTAGGGCAGGGCAACCTGTC  700

seq1  CTGTTATTCTTGTATCAGCCCTAAAGCATAACAGTCAGTCTTGAATTC  746
      ||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CTGTTATTCTTGTATCAGCCCTAAAGCATAACAGTCAATCTTGAATTC  748