BAC Information

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BAC

Clone NameB6Ng01-033N16
Chromosome1 (Build37)11 (Build37)
Map Location 174,665,226 - 174,665,69140,887,822 - 40,888,469
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSlamf1, Cd84, Slamf6, Vangl2, LOC100040199, Nhlh1, Ncstn, Copa, Pex19, LOC100041219, Wdr42a, Pea15a, Casq1, Timm23p, Atp1a2, Igsf8, Kcnj9, Kcnj10, Pigm, LOC665819, Slamf9, LOC100040274, Igsf9, Tagln2, Ccdc19, EG240916, Slamf8, Fcrl6, Dusp23, LOC100040320, Crp
Downstream geneLOC665875, Apcs, Olfr16, GA_x5J8B7W5Q1F-395172-396104, Olfr1408, GA_x5J8B7W5Q1F-344462-343889, Olfr1406, Olfr218, Olfr1405-ps1, Olfr1404, Fcer1a, Olfr1403, Darc, Cadm3, Aim2, EG240921, BC094916, LOC623121, AI447904, E430029J22Rik, LOC665972, AI607873
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-033N16.bB6Ng01-033N16.g
ACCDH862788DH862789
length456649
definitionDH862788|Mus musculus domesticus DNA, BAC clone: B6Ng01-033N16, 5' end.DH862789|Mus musculus domesticus DNA, BAC clone: B6Ng01-033N16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(174,665,226 - 174,665,691)(40,887,822 - 40,888,469)
sequence
ctgatctttccaaaacttttatcatgaatgggtgttggatcttgtcaaat
gctttttctgcatctaacaagatgatcatgtggtttttgtctttgagttt
gtttatatagtgaattatgttgatttatttccatatattaaaccattcct
gcatccctggaatgaaacctacttcgtcaggatggatgattgttttgatg
tgttcttggattcagttagagagaattttatttagtatttttgcatcgat
attcataagggaaattggtctgaaattatctttgttgggtctttctatgg
tttaggtatcagagtaattgtggcttcatagaataaactgggtagggtat
cttctgcttctattttgtggaatagtttgtgaagaactgaaattagatct
tctttgaaggtctgatagaactctgcactaaacccatctggttgtgggct
tttttt
gaattcacgatttttttatgccaaaatgatttaagaaacataaacaataa
agaaaagaaatgggatattttaaaaggggtgagccagggctgtttgcacc
ttttcagcaaaaaagcaatcctctaagcaaatatttactgtttggatcct
tgagcatgagatgtgtagacaggaatgtaatgtccgtgcagtctgtttcc
agtgcattagtcattatattaaaaacagcagactagattctcttttcttg
agaatgcatgctacacgctcaaaatcaatcttgatcaacaaactgcaaca
caatttgatgattcagagctgagaagattatggacatgtttcaattaaaa
aacacattcagagaagataacttcaattcattatgcatctaacaatgcaa
aaaaataaaaggaacaagctggaggctgccaagtcaattctacatgggga
actctggtctacttcacctaacagcacagtgcagatgaatttgtttttct
ttctttctttctttctttctttctttctttctttctttctttcttccttc
cttccttccttccttccttccatccttccttcctttcttcttttttttct
ctctttttctctctctctgtcttttttttgtttatttataggctattat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_174665226_174665691
seq2: B6Ng01-033N16.b_45_506 (reverse)

seq1  AAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTACCAGACCTT  50
      ||||||||||||  ||||||||||||||||||||||||||| ||||||||
seq2  AAAAAAAGCCCACAACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTT  50

seq1  CAAAGAAGATCTAATTCCAATTCTGCACAAACTATTTCACAAAATAGAAG  100
      |||||||||||||||| || |||| ||||||||||| |||||||||||||
seq2  CAAAGAAGATCTAATTTCAGTTCTTCACAAACTATTCCACAAAATAGAAG  100

seq1  TAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATA  150
       ||||| ||| |||||||  | ||| ||||||||||| ||||||||||||
seq2  CAGAAGATACCCTACCCAGTTTATTCTATGAAGCCACAATTACTCTGATA  150

seq1  CCTAAACCACAGAAAGACCCAACAAAGATAGAGAACTTCAGACCAATTTC  200
      ||||||||| |||||||||||||||||||    || ||||||||||||||
seq2  CCTAAACCATAGAAAGACCCAACAAAGAT----AATTTCAGACCAATTTC  196

seq1  TCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAA  250
       ||||||||||||||||||||||| || |||||||||||| ||||| |||
seq2  CCTTATGAATATCGATGCAAAAATACTAAATAAAATTCTCTCTAACTGAA  246

seq1  TCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATT  300
      ||||||||||||| ||| ||||||||||||||||| |||||||||| |||
seq2  TCCAAGAACACATCAAAACAATCATCCATCCTGACGAAGTAGGTTTCATT  296

seq1  CCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAACGTAATCCA  350
      ||||||||||||| ||||||||||||| | ||||  |||||| |||| ||
seq2  CCAGGGATGCAGGAATGGTTTAATATATGGAAATAAATCAACATAATTCA  346

seq1  TTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATG  400
       |||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTTGTTAGATG  396

seq1  CAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTTTG  446

seq1  GAAAGATCAGGAATTC  466
      ||||||||||||||||
seq2  GAAAGATCAGGAATTC  462

seq1: chr11_40887822_40888469
seq2: B6Ng01-033N16.g_71_719 (reverse)

seq1  AAAATAGCCTATAAATAAACAAAAAAAAGACAGAGAGAGAGAGAGAGAGA  50
      | |||||||||||||||||||||||||||||||||||||||| | |||||
seq2  ATAATAGCCTATAAATAAACAAAAAAAAGACAGAGAGAGAGAAAAAGAGA  50

seq1  G-AGAAGAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGG  99
      | | || | |||| ||||||||||||| ||||||||||||||||||||||
seq2  GAAAAAAAAGAAGAAAGGAAGGAAGGATGGAAGGAAGGAAGGAAGGAAGG  100

seq1  AAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA  150

seq1  GAAAAACAAATTCATCTGCACTGTGCTGTTAGGTGAAGTAGACCAGAGTT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAACAAATTCATCTGCACTGTGCTGTTAGGTGAAGTAGACCAGAGTT  200

seq1  CCCCATGTAGAATTGACTTGGCAGCCTCCAGCTTGTTCCTTTTATTTTTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATGTAGAATTGACTTGGCAGCCTCCAGCTTGTTCCTTTTATTTTTT  250

seq1  TGCATTGTTAGATGCATAATGAATTGAAGTTATCTTCTCTGAATGTGTTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTGTTAGATGCATAATGAATTGAAGTTATCTTCTCTGAATGTGTTT  300

seq1  TTTAATTGAAACATGTCCATAATCTTCTCAGCTCTGAATCATCAAATTGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTGAAACATGTCCATAATCTTCTCAGCTCTGAATCATCAAATTGT  350

seq1  GTTGCAGTTTGTTGATCAAGATTGATTTTGAGCGTGTAGCATGCATTCTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCAGTTTGTTGATCAAGATTGATTTTGAGCGTGTAGCATGCATTCTC  400

seq1  AAGAAAAGAGAATCTAGTCTGCTGTTTTTAATATAATGACTAATGCACTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAGAGAATCTAGTCTGCTGTTTTTAATATAATGACTAATGCACTG  450

seq1  GAAACAGACTGCACGGACATTACATTCCTGTCTACACATCTCATGCTCAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAGACTGCACGGACATTACATTCCTGTCTACACATCTCATGCTCAA  500

seq1  GGATCCAAACAGTAAATATTTGCTTAGAGGATTGCTTTTTTGCTGAAAAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCCAAACAGTAAATATTTGCTTAGAGGATTGCTTTTTTGCTGAAAAG  550

seq1  GTGCAAACAGCCCTGGCTCACCCCTTTTAAAATATCCCATTTCTTTTCTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAAACAGCCCTGGCTCACCCCTTTTAAAATATCCCATTTCTTTTCTT  600

seq1  TATTGTTTATGTTTCTTAAATCATTTTGGCATAAAAAAATCGTGAATTC  648
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTTTATGTTTCTTAAATCATTTTGGCATAAAAAAATCGTGAATTC  649