BAC Information

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BAC

Clone NameB6Ng01-034I12
Chromosome11 (Build37)
Map Location 53,167,499 - 53,340,481
singlet/doubletdoublet
Overlap geneAff4, LOC100040576, Leap2, Uqcrq, Gdf9, Shroom1, ENSMUSG00000049427, Ankrd43, LOC546500, Sept8
Upstream geneVdac1, 9530068E07Rik, LOC667659, LOC667667, LOC100040523, Fstl4, LOC623205, Hspa4, Zcchc10
Downstream geneCycl, Kif3a, Il4, Il13, LOC667731, Rad50, Il5, Irf1, LOC622459, Slc22a5, LOC667762, Slc22a21, Slc22a4, Pdlim4, P4ha2, LOC623647, Dbi-ps, Csf2, Il3, Acsl6, 4930404A10Rik, LOC100041400, LOC100041411, Fnip1, Rapgef6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-034I12.bB6Ng01-034I12.g
ACCDH863257DH863258
length804655
definitionDH863257|Mus musculus domesticus DNA, BAC clone: B6Ng01-034I12, 5' end.DH863258|Mus musculus domesticus DNA, BAC clone: B6Ng01-034I12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,339,678 - 53,340,481)(53,167,499 - 53,168,153)
sequence
gaattcaatgctatctttaggtacttagcaagcttgaggacagcctgaac
tacatgagatcctgtctcaaaagggaaacgtgaaaaggaaaaaggaaata
aaatcaaaagaaaaagagaataccgggcccaacagagggcttggcactta
ggagaaggtatctggaccaaggacattactgtctgacaggctagtctgga
ggaaagatctggggaaatgatgtgtccactccattctggatgcatggaag
cataggtactcttccacaaggacaagcttttaggttggcaggccctagac
aggggtagctcttgctgactctggcccctttcatatctagcaacctaggg
tgctcactaggggctctaaacatcttcaaaaatccccctgaacaaggaca
gttggcaccttggagatctgcacacagtaagatttgcacatggccaagat
cccctcggaaatcactaacgagctcttggatcctgagcaaaggcaaggct
ttctacgtcatccttttctttggcacatcagagaaagcaaccaaactaag
aaagtgcaatctttcctgcctggccatccagaacaaagcagagggccttg
ctcattatacagcccagtgggtaactgggacatccctgtctggtccagaa
ctgttttctgaatctcgggatcaatcccttatttgtcagaaatgaggaac
cgtctgttttaccaagaattgaggtgcatctagggagaatcgggtctcac
ggctttgcccacctcacaaaagagactatttttagagactggaaactggc
tgaa
gaattcatttctgggagagtgtttgctagttgttactgtgaatacattgt
agttaaaggttcaaatctgagtagatacacttctttgttactttgttact
cttattagccatcttgttacatttggagtgacactatctagtacatggga
taacaataataaatatcctttttttttttttttttttcccccttttttgg
ttttttgagacagggtttctctatgtagccctggctgtcctggaactcct
ctgtagaccaggctggccttgaaaatatccctctaattaactcttgcctt
accacctgatccatttagcttgatgttcattttcactggcagtttttatt
ttgtttgttttgtttgatacaagtcttctgtgtcattttggcttcaaact
ttcagctctcttcctgtctcagcctctttcttgagttctaggactataga
catgaccacaccttgagaattttagtgatactgacacacagagagaagga
gagccaagtcaatttagttctggttcaatttagttttatttagatgttgg
aattagcttttaatctttttttaaattaaaaaaaattttttagacagggt
ttatatagcccagtctgtcctcaaactgaatgtgtagctggtgctggcct
tgaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_53339678_53340481
seq2: B6Ng01-034I12.b_39_842 (reverse)

seq1  TTCAGCAGATTTCCAGTCTCTGAAGATAGTCTGCTTTCGTG-TGTGGGC-  48
      ||||||   |||||||||||| || ||||||| |||| |||  |||||| 
seq2  TTCAGCCAGTTTCCAGTCTCTAAAAATAGTCT-CTTTTGTGAGGTGGGCA  49

seq1  AAGCCGTGAGACCCGACTTCTCCCTAGATGCCACCTCAATTCTTGGTAAA  98
      |||||||||||||||| ||||||||||||| |||||||||||||||||||
seq2  AAGCCGTGAGACCCGA-TTCTCCCTAGATG-CACCTCAATTCTTGGTAAA  97

seq1  ACAGACGGTTCCTCATGTCTGACAATTA--GGGCTGATCCCGAGGGTTCA  146
      |||||||||||||||| |||||||| ||  ||  ||||||||| | ||||
seq2  ACAGACGGTTCCTCATTTCTGACAAATAAGGGATTGATCCCGA-GATTCA  146

seq1  GAAAACAGTTCTGGACCAGGACAGGGATGTCCCAGTTACCCACTGGGCTG  196
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GAAAACAGTTCTGGACCA-GACAGGGATGTCCCAGTTACCCACTGGGCTG  195

seq1  TATAATGAGCAAGGCCCTCTGCTTTGTTCTGGATGGCCAGGCAGGAAAGA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATGAGCAAGGCCCTCTGCTTTGTTCTGGATGGCCAGGCAGGAAAGA  245

seq1  TTGCACTTTCTTAGTTTGGTTGCTTTCTCTGATGTGCCAAAG-AAAGGAT  295
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TTGCACTTTCTTAGTTTGGTTGCTTTCTCTGATGTGCCAAAGAAAAGGAT  295

seq1  GACGTAGAAAGCCTTGCCTTTGCTCAGGATCCAAGAGCTCGTTAGTGATT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGTAGAAAGCCTTGCCTTTGCTCAGGATCCAAGAGCTCGTTAGTGATT  345

seq1  TCCGAGGGGATCTTGGCCATGTGCAAATCTTACTGTGTGCAGATCTCCAA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGAGGGGATCTTGGCCATGTGCAAATCTTACTGTGTGCAGATCTCCAA  395

seq1  GGTGCCAACTGTCCTTGTTCAGGGGGATTTTTGAAGATGTTTAGAGCCCC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCCAACTGTCCTTGTTCAGGGGGATTTTTGAAGATGTTTAGAGCCCC  445

seq1  TAGTGAGCACCCTAGGTTGCTAGATATGAAAGGGGCCAGAGTCAGCAAGA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGAGCACCCTAGGTTGCTAGATATGAAAGGGGCCAGAGTCAGCAAGA  495

seq1  GCTACCCCTGTCTAGGGCCTGCCAACCTAAAAGCTTGTCCTTGTGGAAGA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACCCCTGTCTAGGGCCTGCCAACCTAAAAGCTTGTCCTTGTGGAAGA  545

seq1  GTACCTATGCTTCCATGCATCCAGAATGGAGTGGACACATCATTTCCCCA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCTATGCTTCCATGCATCCAGAATGGAGTGGACACATCATTTCCCCA  595

seq1  GATCTTTCCTCCAGACTAGCCTGTCAGACAGTAATGTCCTTGGTCCAGAT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTTCCTCCAGACTAGCCTGTCAGACAGTAATGTCCTTGGTCCAGAT  645

seq1  ACCTTCTCCTAAGTGCCAAGCCCTCTGTTGGGCCCGGTATTCTCTTTTTC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCTCCTAAGTGCCAAGCCCTCTGTTGGGCCCGGTATTCTCTTTTTC  695

seq1  TTTTGATTTTATTTCCTTTTTCCTTTTCACGTTTCCCTTTTGAGACAGGA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGATTTTATTTCCTTTTTCCTTTTCACGTTTCCCTTTTGAGACAGGA  745

seq1  TCTCATGTAGTTCAGGCTGTCCTCAAGCTTGCTAAGTACCTAAAGATAGC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATGTAGTTCAGGCTGTCCTCAAGCTTGCTAAGTACCTAAAGATAGC  795

seq1  ATTGAATTC  804
      |||||||||
seq2  ATTGAATTC  804

seq1: chr11_53167499_53168153
seq2: B6Ng01-034I12.g_70_723

seq1  GAATTCATTTCTGGGAGAGTGTTTGCTAGTTGTTACTGTGAATACATTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTCTGGGAGAGTGTTTGCTAGTTGTTACTGTGAATACATTGT  50

seq1  AGTTAAAGGTTCAAATCTGAGTAGATACACTTCTTTGTTACTTTGTTACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAAGGTTCAAATCTGAGTAGATACACTTCTTTGTTACTTTGTTACT  100

seq1  CTTATTAGCCATCTTGTTACATTTGGAGTGACACTATCTAGTACATGGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTAGCCATCTTGTTACATTTGGAGTGACACTATCTAGTACATGGGA  150

seq1  TAACAATAATAAATATCCTTTTTTTTTTTTTTTTTTTCCCCCTTTTTTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAATAATAAATATCCTTTTTTTTTTTTTTTTTTTCCCCCTTTTTTGG  200

seq1  TTTTTTGAGACAGGGTTTCTCTATGTAGCCCTGGCTGTCCTGGAACTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGAGACAGGGTTTCTCTATGTAGCCCTGGCTGTCCTGGAACTCCT  250

seq1  CTGTAGACCAGGCTGGCCTTGAAAATATCCCTCTAATTAACTCTTGCCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGACCAGGCTGGCCTTGAAAATATCCCTCTAATTAACTCTTGCCTT  300

seq1  ACCACCTGATCCATTTAGCTTGATGTTCATTTTCACTGGCAGTTTTTATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCTGATCCATTTAGCTTGATGTTCATTTTCACTGGCAGTTTTTATT  350

seq1  TTGTTTGTTTTGTTTGATACAAGTCTTCTGTGTCATTTTGGCTTCAAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGTTTTGTTTGATACAAGTCTTCTGTGTCATTTTGGCTTCAAACT  400

seq1  TTCAGCTCTCTTCCTGTCTCAGCCTCTTTCTTGAGTTCTAGGACTATAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCTCTCTTCCTGTCTCAGCCTCTTTCTTGAGTTCTAGGACTATAGA  450

seq1  CATGACCACACCTTGAGAATTTTAGTGATACTGACACACAGAGAGAAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACCACACCTTGAGAATTTTAGTGATACTGACACACAGAGAGAAGGA  500

seq1  GAGCCAAGTCAATTTAGTTCTGGTTCAATTTAGTTTTATTTAGATGTTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAAGTCAATTTAGTTCTGGTTCAATTTAGTTTTATTTAGATGTTGG  550

seq1  AATTAGCTTTTAATCTTATTTTTAAATTAAAAAAAATTTTTTAGACAGGG  600
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AATTAGCTTTTAATCTT-TTTTTAAATTAAAAAAAATTTTTTAGACAGGG  599

seq1  TTTATATAGCCCAGTCTGTCCTCAAACTGAATGTGTAGCTGGTGCTGGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATAGCCCAGTCTGTCCTCAAACTGAATGTGTAGCTGGTGCTGGCC  649

seq1  TTGAA  655
      |||||
seq2  TTGAA  654