BAC Information

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BAC

Clone NameB6Ng01-035A11
Chromosome11 (Build37)
Map Location 24,991,236 - 25,147,150
singlet/doubletdoublet
Overlap genenone
Upstream geneBcl11a, LOC100042282
Downstream gene5730522E02Rik, LOC100042328
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-035A11.bB6Ng01-035A11.g
ACCDH863609DH863610
length1,0341,053
definitionDH863609|Mus musculus domesticus DNA, BAC clone: B6Ng01-035A11, 5' end.DH863610|Mus musculus domesticus DNA, BAC clone: B6Ng01-035A11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,146,084 - 25,147,150)(24,991,236 - 24,992,334)
sequence
gaattcactatgtagaccaggctggattcaaactcacagagatcctccta
ctttccaagtgctgagattaaaggcatgaatcaatatgtttggcttttta
aaacaaatttaaagcaaaaaagatcaagcttaactgttttaacattccat
tccattgtgtttcattttttccatatgcagatatatttaacacacacaca
cacacacacacacacacacacacacacacacacacacacatctttgttgt
tttgatgatcttcagtccattactgctggctgactacatttaatccctct
ggtattcagggatagaaactgttgcaaaacacactaatgggcagatcact
cctggtggaagttttactacacttagcttgttccttttggtatcctaacc
aatacctaatatattgaaaggaaaagcttgtttttatcagacttaccccc
tgctctttgattcagacctaccgacaggtgtcatcttacatagctataag
ttaaccagagttcctttgaacatggcatagatttcgagttttcaatttat
aatttatagcacaacgtaaatgctatgcatatacagtgtaaataatagca
ggaaaactacacatggtctgtaagcatgtgaccctctctgctcctctttc
tgctgcatcccttcccccattggtgcctttccagtctcattccctccccc
tccccccgaccctcccctttcatatccaatccacctcttatgtattgtgt
caccttcctacttcacctcctgaaagactgctctgcctcacaaatccctt
ttcattttctggcttcaaccatgcttacttccatataaatacagggatat
gcacagggagacacttgtgacatttgtctctaggcaggttatttattgtg
taatattttcattacaagttttgtctgaaacattgtttctcactagagaa
aaaatctacatgcttttataacaaaattcattatctagtgcctcttggtg
aactattttcttactattttttagctgataaaca
gaattctcatgtcacacatggccctgagtcttttcacctttgcatggcca
gagtgcaagcaaattcttagtcttccttatcagggttctgcttcacaact
atgaattgaattgaatttccacatgttctttccttataggatgcagagat
tcacatgaaaaccatccatgggtatttatgtgaactgaaggtgttcaaat
acttaggattccggatgcacactgcaaagttggacatgtatgaaatctta
tccttaaagatccttgctttatactaattgaaaggctgttgaggatagct
tgaagagtatatctgaggaatagatttgtcagcaaagagagaaagcagcc
aaccagtattatgatcttaaaccttttttcttaaaatggactttcactaa
aaataactactctgaaaacctactttagtccactgtgcttattgacaggc
tgttatgggccaatccaagttttacaattggatttcaaaggagaaaggac
tttaaaaacaaacaaaaaaaaaaaacaacaacttttttttttacctcctt
gctttaaatatattcaagacgtctgcttgaaaaatgacgttgatcctttt
attgctgatggcaacaacagaaaagcaatctatatgttagatatttttct
gagatgaataccctagaacactgagatgttccctaaaatattaatggtat
gtgagaaagtgtaggctaagtcttcctcacagctttgccactgcagccga
gtgatggactctgcctgatgacagaattccagttctgtttcaatacataa
gtccatagggaatcaaaccaatttgtcacaccatgtagagatagcatgag
ctgatgagattcctctgcctttctctagtgtcttagactttctgagttta
tgcttatcagctgagtgtggtgggagaattatgagctgagcaaaacacac
aagaaatcagttgcatgttccagaactaccagatgtgactgacgacagcc
taccacaggcatggaaacagtctgggatttatgcaagcccatccacatcc
atg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_25146084_25147150
seq2: B6Ng01-035A11.b_49_1082 (reverse)

seq1  TGTTTATTACAGCTTTAAAAAAATAGTAAGAAAATAGGTTTCTACCAAGA  50
      |||||||  |||||   ||||||||||||||||||||  ||| |||||||
seq2  TGTTTAT--CAGCT---AAAAAATAGTAAGAAAATAG--TTC-ACCAAGA  42

seq1  GGCAACTAGATAATGAAATCTTGGTATATAAGCAATGTAGATTTTTTTTC  100
      ||| ||||||||||| ||| ||| |||| |||| ||||||||||||| ||
seq2  GGC-ACTAGATAATG-AATTTTGTTATAAAAGC-ATGTAGATTTTTTCTC  89

seq1  CTCCTTAGTGAAGAAAACCAATGTTTTCAGGACAAAACTTGTAATTGAAA  150
           ||||| |||||  ||||| ||||| |||||||||||||| |||||
seq2  -----TAGTG-AGAAA--CAATG-TTTCA-GACAAAACTTGTAA-TGAAA  128

seq1  ATATTACAACCAATAAATTAACCCTGGCCTAGGAGAACAAATGTCACAAG  200
      ||||||||  ||||||| |||||   ||||| ||| ||||||||||||||
seq2  ATATTACA--CAATAAA-TAACC--TGCCTA-GAG-ACAAATGTCACAAG  171

seq1  TTGTCTCCCCTGTGCATATCCCTGTATTTATATGGGAGTAAGCATGGTTG  250
       ||||| |||||||||||||||||||||||||||| ||||||||||||| 
seq2  -TGTCT-CCCTGTGCATATCCCTGTATTTATATGGAAGTAAGCATGGTT-  218

seq1  GAAGCCAGGAAAATGGAAAGGGATTTGTGAGGCAGAGCAGTCTTTCAGGA  300
      ||||||| ||||||| ||||||||||||||||||||||||||||||||||
seq2  GAAGCCA-GAAAATGAAAAGGGATTTGTGAGGCAGAGCAGTCTTTCAGGA  267

seq1  GGTGAAGTAGGAAGGTGACACAATACATAAGAGGTGGATTGGATATGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAAGTAGGAAGGTGACACAATACATAAGAGGTGGATTGGATATGAAA  317

seq1  GGGGAGGGTCGGGGGGAGGGGGAGGGAATGAGACTGGAAAGGCACCAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGGGTCGGGGGGAGGGGGAGGGAATGAGACTGGAAAGGCACCAATG  367

seq1  GGGGAAGGGATGCAGCAGAAAGAGGAGCAGAGAGGGTCACATGCTTACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAGGGATGCAGCAGAAAGAGGAGCAGAGAGGGTCACATGCTTACAG  417

seq1  ACCATGTGTAGTTTTCCTGCTATTATTTACACTGTATATGCATAGCATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGTGTAGTTTTCCTGCTATTATTTACACTGTATATGCATAGCATTT  467

seq1  ACGTTGTGCTATAAATTATAAATTGAAAACTCGAAATCTATGCCATGTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTTGTGCTATAAATTATAAATTGAAAACTCGAAATCTATGCCATGTTC  517

seq1  AAAGGAACTCTGGTTAACTTATAGCTATGTAAGATGACACCTGTCGGTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAACTCTGGTTAACTTATAGCTATGTAAGATGACACCTGTCGGTAG  567

seq1  GTCTGAATCAAAGAGCAGGGGGTAAGTCTGATAAAAACAAGCTTTTCCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGAATCAAAGAGCAGGGGGTAAGTCTGATAAAAACAAGCTTTTCCTT  617

seq1  TCAATATATTAGGTATTGGTTAGGATACCAAAAGGAACAAGCTAAGTGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATATATTAGGTATTGGTTAGGATACCAAAAGGAACAAGCTAAGTGTA  667

seq1  GTAAAACTTCCACCAGGAGTGATCTGCCCATTAGTGTGTTTTGCAACAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAACTTCCACCAGGAGTGATCTGCCCATTAGTGTGTTTTGCAACAGT  717

seq1  TTCTATCCCTGAATACCAGAGGGATTAAATGTAGTCAGCCAGCAGTAATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATCCCTGAATACCAGAGGGATTAAATGTAGTCAGCCAGCAGTAATG  767

seq1  GACTGAAGATCATCAAAACAACAAAGATGTGTGTGTGTGTGTGTGTGTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGAAGATCATCAAAACAACAAAGATGTGTGTGTGTGTGTGTGTGTGT  817

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTTAAATATATCTGCATATGGAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTTAAATATATCTGCATATGGAAA  867

seq1  AAATGAAACACAATGGAATGGAATGTTAAAACAGTTAAGCTTGATCTTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAAACACAATGGAATGGAATGTTAAAACAGTTAAGCTTGATCTTTT  917

seq1  TTGCTTTAAATTTGTTTTAAAAAGCCAAACATATTGATTCATGCCTTTAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTAAATTTGTTTTAAAAAGCCAAACATATTGATTCATGCCTTTAA  967

seq1  TCTCAGCACTTGGAAAGTAGGAGGATCTCTGTGAGTTTGAATCCAGCCTG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGCACTTGGAAAGTAGGAGGATCTCTGTGAGTTTGAATCCAGCCTG  1017

seq1  GTCTACATAGTGAATTC  1067
      |||||||||||||||||
seq2  GTCTACATAGTGAATTC  1034

seq1: chr11_24991236_24992334
seq2: B6Ng01-035A11.g_67_1119

seq1  GAATTCTCATGTCACACATGGCCCTGAGTCTTTTCACCTTTGCATGGCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATGTCACACATGGCCCTGAGTCTTTTCACCTTTGCATGGCCA  50

seq1  GAGTGCAAGCAAATTCTTAGTCTTCCTTATCAGGGTTCTGCTTCACAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCAAGCAAATTCTTAGTCTTCCTTATCAGGGTTCTGCTTCACAACT  100

seq1  ATGAATTGAATTGAATTTCCACATGTTCTTTCCTTATAGGATGCAGAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATTGAATTGAATTTCCACATGTTCTTTCCTTATAGGATGCAGAGAT  150

seq1  TCACATGAAAACCATCCATGGGTATTTATGTGAACTGAAGGTGTTCAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATGAAAACCATCCATGGGTATTTATGTGAACTGAAGGTGTTCAAAT  200

seq1  ACTTAGGATTCCGGATGCACACTGCAAAGTTGGACATGTATGAAATCTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGGATTCCGGATGCACACTGCAAAGTTGGACATGTATGAAATCTTA  250

seq1  TCCTTAAAGATCCTTGCTTTATACTAATTGAAAGGCTGTTGAGGATAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTAAAGATCCTTGCTTTATACTAATTGAAAGGCTGTTGAGGATAGCT  300

seq1  TGAAGAGTATATCTGAGGAATAGATTTGTCAGCAAAGAGAGAAAGCAGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAGTATATCTGAGGAATAGATTTGTCAGCAAAGAGAGAAAGCAGCC  350

seq1  AACCAGTATTATGATCTTAAACCTTTTTTCTTAAAATGGACTTTCACTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGTATTATGATCTTAAACCTTTTTTCTTAAAATGGACTTTCACTAA  400

seq1  AAATAACTACTCTGAAAACCTACTTTAGTCCACTGTGCTTATTGACAGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAACTACTCTGAAAACCTACTTTAGTCCACTGTGCTTATTGACAGGC  450

seq1  TGTTATGGGCCAATCCAAGTTTTACAATTGGATTTCAAAGGAGAAAGGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATGGGCCAATCCAAGTTTTACAATTGGATTTCAAAGGAGAAAGGAC  500

seq1  TTTAAAAACAAACAAAAAAAAAAAACAACAACTTTTTTTTTTACCTCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAACAAACAAAAAAAAAAAACAACAACTTTTTTTTTTACCTCCTT  550

seq1  GCTTTAAATATATTCAAGACGTCTGCTTGAAAAATGACGTTGATCCTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTAAATATATTCAAGACGTCTGCTTGAAAAATGACGTTGATCCTTTT  600

seq1  ATTGCTGATGGCAACAACAGAAAAGCAATCTATATGTTAGATATTTTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTGATGGCAACAACAGAAAAGCAATCTATATGTTAGATATTTTTCT  650

seq1  GAGATGAATACCCTAGAACACTGAGATGTTCCCTAAAATATTAATGGTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGAATACCCTAGAACACTGAGATGTTCCCTAAAATATTAATGGTAT  700

seq1  GTGAGAAAGGTGTAGGCTAAGTCTTCCTCACAGCTTTGCCACTGCAGCCG  750
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAAA-GTGTAGGCTAAGTCTTCCTCACAGCTTTGCCACTGCAGCCG  749

seq1  AGGTGATGGACTCTGCCTGATGACAGAATTCCAGTTCTGTTTCAATACAT  800
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  A-GTGATGGACTCTGCCTGATGACAGAATTCCAGTTCTGTTTCAATACAT  798

seq1  AAGGTCCATAGGGAATCAAACCAATTTGTCAACACCATGTAGAGATAAGC  850
      || ||||||||||||||||||||||||||| ||||||||||||||| |||
seq2  AA-GTCCATAGGGAATCAAACCAATTTGTC-ACACCATGTAGAGAT-AGC  845

seq1  ATGAAGCTGATGAGGATTCCTCTTGGCCTTTTCTTCCTTAGGTGTCTTAG  900
      ||| ||||||||| |||||||||  ||||||     ||   |||||||||
seq2  ATG-AGCTGATGA-GATTCCTCT--GCCTTT-----CTCTAGTGTCTTAG  886

seq1  GAACCTTTCTGAGTTTAATGCTTATCCAGCTGAGGTGTGGTGGGAGAATT  950
          |||||||||||| |||||||| ||||||| ||||||||||||||||
seq2  ---ACTTTCTGAGTTT-ATGCTTAT-CAGCTGA-GTGTGGTGGGAGAATT  930

seq1  ATGAGCTGGAGCCAAAAACACCACAAAAGAAAATCAGTTTTGCATGTTCT  1000
      ||||||| |||| |||     |||| ||| |||||||  |||||||||| 
seq2  ATGAGCT-GAGCAAAA-----CACACAAG-AAATCAG--TTGCATGTTC-  970

seq1  CAGAGACTAACCCAGAATGTGACTGACAGACAGCCATACCACAGTGCATG  1050
      |||| ||||  |||| ||||||||||| ||||||| |||||||| |||||
seq2  CAGA-ACTA--CCAG-ATGTGACTGAC-GACAGCC-TACCACAG-GCATG  1013

seq1  GGATAACAGTTCATGGGGATTCATTGCAAGCCCCAATCCACACTCCATG  1099
      |   ||||||     |||||| | |||||||||  ||||||| ||||||
seq2  G--AAACAGT---CTGGGATTTA-TGCAAGCCC--ATCCACA-TCCATG  1053