BAC Information

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BAC

Clone NameB6Ng01-035I03
Chromosome11 (Build37)
Map Location 18,787,314 - 18,974,783
singlet/doubletdoublet
Overlap geneMeis1
Upstream geneEtaa1, LOC327871, LOC627696, LOC627716, LOC665796
Downstream geneLOC635455, LOC100042708, Glns-ps1, LOC665868, LOC100041937, Spred2, Actr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-035I03.bB6Ng01-035I03.g
ACCDH863953DH863954
length983790
definitionDH863953|Mus musculus domesticus DNA, BAC clone: B6Ng01-035I03, 5' end.DH863954|Mus musculus domesticus DNA, BAC clone: B6Ng01-035I03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,973,776 - 18,974,783)(18,787,314 - 18,788,110)
sequence
gaattccaaaattaaaaaaaaaaaaaatcgattggaaacctcacgctatt
gcaagctacaccgagtcacagaaatcaaggggaccctgaaattgggtcat
ttaagatggaggaatcaagtactttttttctaatttgtccaataaataaa
catacacatgacttgtcatctttactacagtaaatcaaactgagcaacaa
acattttcctgagacaaatgtctgtattaaaattctccaagacccttgac
tgttgcactactgtgatctctgggctgcatacacacacatacacacacac
acacacacacacacactcacacttgcattcctcccattgccagacactct
aggtagaacttgccaacaatctattcagagaccctctaggaacacaaaag
gggacctccatctcctcatctacataataaagcccagcattccacgcgcc
tttccccgcccctggagaagctccttgggaaaagcgattcagacccagct
tggggatgcagcactgagtgccaggtcagcgtactaactccaaacaaact
cccttctctcagggagaagggcaagcatcgcttattgttcagggtctggt
tcttgttagaggcactgcttagatagtctcagctccagcatgcgtcccga
tggtaacaaagtcacagaagacctttccccctttgcacacccacctggac
tcccaaactgctgaaaagagactgccccaatttcactgtaaacaagaccc
tgattttcaattctcgatctggaaagcttcgtctgtgaagaagctccgaa
ctcgcctgaagtgtttgtagatgggagtagctggaactggggagtcctgg
agatgcctttgaatagcaagtttttaagtgccttgctttccttttcttgg
ggagtggatactcataggtttttggaagtatttaaagataagaccggcat
tcactaatgtcctactactctcaggactctttg
gaattctccgtctgcgtagttctttatgtaatctcggctgacaggagaaa
cttagtctgctcactttctgtttaattctttgtaaagacattttatgggt
agggaaagtgatttttttgttgttgttttgatttgattcgttgagacagg
gtttctctgtgtagccctggttgtcttggaactcactctgtagactgtgc
tggtttagaactcacaaaagatccacctgcctctgcctcccacgtgctgg
gattaaaggtgtgtacaatgaggacaatttttaacaaggctcaagaaact
gaatgacttatttccaggcatgtgctaccaaaaagatgctaagacttcgt
tgatgacacaaaacttagggaatggccatgatttcttttcctttctaagg
ttgggactacagcagccatttgtgtccacacacgtagtttcagacaagga
gtaagcatgacaacgaacaccttaaaaatggagaatgtctatggctgccc
agctttggtatgtaaagaggaggctgctcaaaaaaaaaaaatctgtaact
caggttttccatattcccacataggtctcctccattactgaaacccgtag
gcttccaagaaccaacacaaaataaccagttaggtcacaattcatgacca
tcagccctggcaccaaaaagggtaaatcactttagaaagggttaatcttt
tagctttgccattaactgggtgtcttgaaatcccaccaatcaatggatag
cctcccctggaaccaaaaaagcactaaacatcttccctaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_18973776_18974783
seq2: B6Ng01-035I03.b_45_1027 (reverse)

seq1  CAAAGAGTCCCTGGAAGAAGTAGGGTAGGACAATTAGTGAATGGCCGTTC  50
      |||||||| ||||  || ||||  ||||||| |||||||||| |||| ||
seq2  CAAAGAGT-CCTG--AG-AGTA--GTAGGAC-ATTAGTGAAT-GCCGGTC  42

seq1  TTTATTCTTTTAAAATGACTTTTCAAAAAAACCTAATGGAGTATCAACTT  100
      ||   |||||  |||| ||||     |||||||||   ||||||| ||| 
seq2  TT--ATCTTT--AAAT-ACTT---CCAAAAACCTA--TGAGTATCCACTC  82

seq1  CCCAAGAAAAGGAAAGCAAGGCACTTAAAAAACTTGGCCTATTTCAAAGG  150
      |||||||||||||||||||||||||| |||||||||  ||| ||||||||
seq2  CCCAAGAAAAGGAAAGCAAGGCACTT-AAAAACTTG--CTA-TTCAAAGG  128

seq1  CATCTCCAGGACT-CCCAGGTCCAGCTACT-CCATCTTACAAACACTTCA  198
      ||||||||||||| ||||| |||||||||| ||||| |||||||||||||
seq2  CATCTCCAGGACTCCCCAGTTCCAGCTACTCCCATC-TACAAACACTTCA  177

seq1  GGCGAGTTCGGAGGCTTCTTCACAGACGAAGCTTGTCCAGATCAGAGAAT  248
      |||||||||||| ||||||||||||||||||||| |||||||| ||||||
seq2  GGCGAGTTCGGA-GCTTCTTCACAGACGAAGCTT-TCCAGATC-GAGAAT  224

seq1  TGAAAATCAGGGGTCTTGTCTACAGTGAGATTGGGGGCAGTCTCTTTTCA  298
      ||||||||| ||||||||| |||||||| ||| |||||||||||||||||
seq2  TGAAAATCA-GGGTCTTGTTTACAGTGAAATT-GGGGCAGTCTCTTTTCA  272

seq1  GCAGTTTTGGGAGTCCAGGTGGGTGTGCAGAGGGGGAAAGGTCTTCTGTG  348
      |||| |||||||||||||||||||||||| ||||||||||||||||||||
seq2  GCAG-TTTGGGAGTCCAGGTGGGTGTGCAAAGGGGGAAAGGTCTTCTGTG  321

seq1  ACTTTGTTACCATCGGGACGCATGCTGGAGCTGAGACTATCTAAGCAGTG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGTTACCATCGGGACGCATGCTGGAGCTGAGACTATCTAAGCAGTG  371

seq1  CCTCTAACAAGAA-CAGAACCTGAACAATAAGCGATGCTTGCCCTTCTCC  447
      ||||||||||||| |||| |||||||||||||||||||||||||||||||
seq2  CCTCTAACAAGAACCAGACCCTGAACAATAAGCGATGCTTGCCCTTCTCC  421

seq1  CTGAGAGAAGGGAGTTTGTTTGGAGTTAGTACGCTGACCTGGCACTCAGT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAGAAGGGAGTTTGTTTGGAGTTAGTACGCTGACCTGGCACTCAGT  471

seq1  GCTGCAT-CCCAAGCTGGGTCTGAATCGCTTTTCCCAAGGAGCTTCTCCA  546
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCATCCCCAAGCTGGGTCTGAATCGCTTTTCCCAAGGAGCTTCTCCA  521

seq1  GGGGCGGGGAAAGGCGCGTGGAATGCTGGGCTTTATTATGTAGATGAGGA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCGGGGAAAGGCGCGTGGAATGCTGGGCTTTATTATGTAGATGAGGA  571

seq1  GATGGAGGTCCCCTTTTGTGTTCCTAGAGGGTCTCTGAATAGATTGTTGG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGAGGTCCCCTTTTGTGTTCCTAGAGGGTCTCTGAATAGATTGTTGG  621

seq1  CAAGTTCTACCTAGAGTGTCTGGCAATGGGAGGAATGCAAGTGTGAGTGT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTCTACCTAGAGTGTCTGGCAATGGGAGGAATGCAAGTGTGAGTGT  671

seq1  GTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTATGCAGCCCAGAGATCAC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTATGCAGCCCAGAGATCAC  721

seq1  AGTAGTGCAACAGTCAAGGGTCTTGGAGAATTTTAATACAGACATTTGTC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTGCAACAGTCAAGGGTCTTGGAGAATTTTAATACAGACATTTGTC  771

seq1  TCAGGAAAATGTTTGTTGCTCAGTTTGATTTACTGTAGTAAAGATGACAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAAAATGTTTGTTGCTCAGTTTGATTTACTGTAGTAAAGATGACAA  821

seq1  GTCATGTGTATGTTTATTTATTGGACAAATTAGAAAAAAAGTACTTGATT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGTGTATGTTTATTTATTGGACAAATTAGAAAAAAAGTACTTGATT  871

seq1  CCTCCATCTTAAATGACCCAATTTCAGGGTCCCCTTGATTTCTGTGACTC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCATCTTAAATGACCCAATTTCAGGGTCCCCTTGATTTCTGTGACTC  921

seq1  GGTGTAGCTTGCAATAGCGTGAGGTTTCCAATCGATTTTTTTTTTTTTTA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTAGCTTGCAATAGCGTGAGGTTTCCAATCGATTTTTTTTTTTTTTA  971

seq1  ATTTTGGAATTC  1008
      ||||||||||||
seq2  ATTTTGGAATTC  983

seq1: chr11_18787314_18788110
seq2: B6Ng01-035I03.g_65_854

seq1  GAATTCTCCGTCTGCGTAGTTCTTTATGTAATCTCGGCTGACAGGAGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCGTCTGCGTAGTTCTTTATGTAATCTCGGCTGACAGGAGAAA  50

seq1  CTTAGTCTGCTCACTTTCTGTTTAATTCTTTGTAAAGACATTTTATGGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTCTGCTCACTTTCTGTTTAATTCTTTGTAAAGACATTTTATGGGT  100

seq1  AGGGAAAGTGATTTTTTTGTTGTTGTTTTGATTTGATTCGTTGAGACAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAAGTGATTTTTTTGTTGTTGTTTTGATTTGATTCGTTGAGACAGG  150

seq1  GTTTCTCTGTGTAGCCCTGGTTGTCTTGGAACTCACTCTGTAGACTGTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTCTGTGTAGCCCTGGTTGTCTTGGAACTCACTCTGTAGACTGTGC  200

seq1  TGGTTTAGAACTCACAAAAGATCCACCTGCCTCTGCCTCCCACGTGCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTAGAACTCACAAAAGATCCACCTGCCTCTGCCTCCCACGTGCTGG  250

seq1  GATTAAAGGTGTGTACAATGAGGACAATTTTTAACAAGGCTCAAGAAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAAGGTGTGTACAATGAGGACAATTTTTAACAAGGCTCAAGAAACT  300

seq1  GAATGACTTATTTCCAGGCATGTGCTACCAAAAAGATGCTAAGACTTCGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGACTTATTTCCAGGCATGTGCTACCAAAAAGATGCTAAGACTTCGT  350

seq1  TGATGACACAAAACTTAGGGAATGGCCATGATTTC-TTTCCTTTCTAAGG  399
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TGATGACACAAAACTTAGGGAATGGCCATGATTTCTTTTCCTTTCTAAGG  400

seq1  TTGGGACTACAGCAGCCATTTGTGTCCACACACGTAGTTTCAGACAAGGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGACTACAGCAGCCATTTGTGTCCACACACGTAGTTTCAGACAAGGA  450

seq1  GTAAGCATGACAACGAACACCTTAAAAATGGAGAATGTCTATGGCTGCCC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCATGACAACGAACACCTTAAAAATGGAGAATGTCTATGGCTGCCC  500

seq1  AGCTTGGGTATGTAAAGAGGAGGCTGCTC-AAAAAAAAAAATCTGTAACT  548
      ||||| ||||||||||||||||||||||| ||||||||||||||||||||
seq2  AGCTTTGGTATGTAAAGAGGAGGCTGCTCAAAAAAAAAAAATCTGTAACT  550

seq1  CAGGTTTTCCATATTCCCACATAGGTCTCCTCCA-TACTGAATCACGTAG  597
      |||||||||||||||||||||||||||||||||| ||||||| | |||||
seq2  CAGGTTTTCCATATTCCCACATAGGTCTCCTCCATTACTGAAACCCGTAG  600

seq1  GCTTCCAAAGACCAACACAAAATAACCAGCTCAGGTCACCAATTCATGAC  647
      ||||||||  ||||||||||||||||||| | |||||| |||||||||||
seq2  GCTTCCAAGAACCAACACAAAATAACCAG-TTAGGTCA-CAATTCATGAC  648

seq1  CATTCAGCCCGTGGCACCAAAAATGGTAAATCACGTTTAGGAAGTGCTTA  697
      || ||||||| |||||||||||| |||||||||| ||||| ||| | |||
seq2  CA-TCAGCCC-TGGCACCAAAAAGGGTAAATCAC-TTTAGAAAG-GGTTA  694

seq1  ATCATTTAGCTTGGCCATTAACATGGATGTCTAGAACATCCCACCAAATC  747
      ||| |||||||| ||||||||| ||| ||||| ||| |||||||| ||||
seq2  ATCTTTTAGCTTTGCCATTAAC-TGGGTGTCTTGAA-ATCCCACC-AATC  741

seq1  AATGCATAGCCTCTCCTGGAAGCCAACACAGCACTAAACATCTTCCCTAA  797
      |||| |||||||| ||||||| |||| | |||||||||||||||||||||
seq2  AATGGATAGCCTCCCCTGGAA-CCAAAAAAGCACTAAACATCTTCCCTAA  790