BAC Information

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BAC

Clone NameB6Ng01-035I20
Chromosome11 (Build37)
Map Location 3,753,852 - 3,928,926
singlet/doubletdoublet
Overlap geneOsbp2, LOC664920, 4921536K21Rik, Dusp18, Slc35e4, Tcn2, LOC100041720, Pes1, Gal3st1
Upstream geneLOC236604, Sfi1, LOC623257, Eif4enif1, Drg1, Patz1, Pik3ip1, Limk2, Rnf185, 8430429K09Rik, LOC100041573, Pla2g3, Pib5pa, Selm, Smtn, Map1lc3-5, LOC625608, Tug1, Morc2a, LOC664900
Downstream geneSec14l4, Sec14l3, 1700020C11Rik, Sec14l2, LOC625729, Rnf215, 4930562D19Rik, Sf3a1, Tbc1d10a, 2410008K03Rik, LOC625760, Osm, Lif, Hormad2, Mtmr3, LOC100041006, OTTMUSG00000005065, Ascc2, 1110020P15Rik, Zmat5, Cabp7, Nf2, Nipsnap1, Thoc5, Nefh, Ap1b1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-035I20.bB6Ng01-035I20.g
ACCDH863985DH863986
length809413
definitionDH863985|Mus musculus domesticus DNA, BAC clone: B6Ng01-035I20, 5' end.DH863986|Mus musculus domesticus DNA, BAC clone: B6Ng01-035I20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(3,753,852 - 3,754,666)(3,928,520 - 3,928,926)
sequence
gaattcacaggaaaaaaaatagtttaacggaggcgtggggaggcttttca
tacaaaagaaaaggccccagactcctgaagccacatctctggggtgacac
tccgggcctgcaattgaactgcctgtttggctcagggctgtcagtttcca
gccctgcctgattcccttgctgtttcccacctgagataaacaaccagcac
ctgactcgcattcttaactacatcttccctcccaggccgctgcctccttc
tctctttctcatccttccttggctggtttattgttgttgttgttgttttc
ccattaagaagaggcagatggagagctaaggactacatagaccatgtgtg
aaccctactaagttggtatggtggatgagaaatgcaccctcatatgcttg
tgtatttgagcactgtgcctccagttggccatgatgctagggtaggttat
ggaaattttaggataaggagccttgctgaaggatcatgtcacttgggagt
ttatagccacacccctgttccactttgctctctccagttccctgtgtgta
gataaatggtgtactgagctaacttcccactctgggctgctgtgctgtcc
ccagtacacacatgggcttggacctaacctctgaagcataaaaccctaat
aaaggcttttttcagaagtttgctttcggacatacccactcaaaatcgcc
gatataatttgccaagtgccttgttttgatcaaaggataggaacttccat
aactaaggttaaagaaactcaggaaattcattgtttttgaagcaaagtgg
ggttagccc
caggtttgtttcgctacttagtcagtggaggccagcctgagctacatgag
accctgtttgaaagaaactgatttaagatactgttggtatctgctggtgt
gaatttgcagaaagcaaatgtacaaaaattggtatcttcattaataacaa
atgaaaatttatgagaaaaatagggcactaatggaaagaggatggagagc
ttcaattctcagagaagcaagcgcacaggcaggcctcaggaggcttcacc
tcttccaccccgggtcttgatgttcacgggcgttgtcttagtgagcagtg
agatgccttacacccctgagaaatcagaaagaaaaagcaacacacacact
ttgtaaaaaatgatgatagtgttagaagttagtgaaatggagatgtgtgt
gtgtataatttat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_3753852_3754666
seq2: B6Ng01-035I20.b_40_848

seq1  GAATTCACAGGAAAAAAAATAGTTTAACGGAGGCGTGGGGAGGCTTTTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGGAAAAAAAATAGTTTAACGGAGGCGTGGGGAGGCTTTTCA  50

seq1  TACAAAAGAAAAGGCCCCAGACTCCTGAAGCCACATCTCTGGGGTGACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAAGAAAAGGCCCCAGACTCCTGAAGCCACATCTCTGGGGTGACAC  100

seq1  TCCTGGCCTGCAATTGAACTGCCTGTTTGGCTCAGGGCTGTCAGTTTCCA  150
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGGGCCTGCAATTGAACTGCCTGTTTGGCTCAGGGCTGTCAGTTTCCA  150

seq1  GCCCTGCCTGATTCCCTTGCTGTTTCCCACCTGAGATAAACAACCAGCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGCCTGATTCCCTTGCTGTTTCCCACCTGAGATAAACAACCAGCAC  200

seq1  CTGACTCGCATTCTTAACTACATCTTCCCTCCCAGGCCGCTGCCTCCTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTCGCATTCTTAACTACATCTTCCCTCCCAGGCCGCTGCCTCCTTC  250

seq1  TCTCTTTCTCATCCTTCCTTGGCTGGTTTATTGTTGTTGTTGTTGTTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTCTCATCCTTCCTTGGCTGGTTTATTGTTGTTGTTGTTGTTTTC  300

seq1  CCATTAAGAAGAGGCAGATGGAGAGCTAAGGACTAGATAGACCATGTGTG  350
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CCATTAAGAAGAGGCAGATGGAGAGCTAAGGACTACATAGACCATGTGTG  350

seq1  AACCCTACTAAGTTGGTATGGTGGATGAGAAATGCACCCTCATATGCTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTACTAAGTTGGTATGGTGGATGAGAAATGCACCCTCATATGCTTG  400

seq1  TGTATTTGAGCACTGTGCCTCCAGTTGGCCATGATGCTTGGGTAGGTTAT  450
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TGTATTTGAGCACTGTGCCTCCAGTTGGCCATGATGCTAGGGTAGGTTAT  450

seq1  GGAAATTTTAGGACAAGGAGCCTTGCTGAAGGAAGCATGTCACTTGGGAG  500
      ||||||||||||| |||||||||||||||||| | |||||||||||||||
seq2  GGAAATTTTAGGATAAGGAGCCTTGCTGAAGG-ATCATGTCACTTGGGAG  499

seq1  TTTATAGCCACACCCCTGTTCCAGTTTGCTCTCTCCAGTTTCCTGTGTGT  550
      ||||||||||||||||||||||| |||||||||||||||| |||||||||
seq2  TTTATAGCCACACCCCTGTTCCACTTTGCTCTCTCCAGTTCCCTGTGTGT  549

seq1  AGATAAA-GGTGTACTGAGCTAGCTTCCCACTCT-GGCTGCTGTGCTGTC  598
      ||||||| |||||||||||||| ||||||||||| |||||||||||||||
seq2  AGATAAATGGTGTACTGAGCTAACTTCCCACTCTGGGCTGCTGTGCTGTC  599

seq1  CCCATGTACACACATGGTC-TGGACCCTACCTCTCGAACCAT-AAACCAA  646
      |||| |||||||||||| | ||||||  |||||| ||| ||| |||||  
seq2  CCCA-GTACACACATGGGCTTGGACCTAACCTCT-GAAGCATAAAACCCT  647

seq1  AATAAAGGCTTTTTTCTGAAAGTTGCTTTCAGTCATAGCAACAGAAGAGT  696
      |||||||||||||||| |||  |||||||| | |||| | ||  || | |
seq2  AATAAAGGCTTTTTTCAGAAGTTTGCTTTCGGACATACCCACTCAA-AAT  696

seq1  CGCCGATATAGTTTGGCATGTGCCTTGATTTGATCAAGAGCAAGAGGAAA  746
      |||||||||| |||| || |||||||| |||||||||  |  | ||||| 
seq2  CGCCGATATAATTTGCCAAGTGCCTTGTTTTGATCAAAGG--ATAGGAAC  744

seq1  TTCCATCACTCAAGGCTGAGAGGACACTCAAGGACATTCACTGTCGTTGA  796
      |||||| ||| |||| |   | || |||| |||| ||||| |||  ||||
seq2  TTCCATAACT-AAGGTT--AAAGAAACTC-AGGAAATTCATTGTTTTTGA  790

seq1  AGCAGAGTGGGGTTAGCCC  815
      |||| ||||||||||||||
seq2  AGCAAAGTGGGGTTAGCCC  809

seq1: chr11_3928520_3928926
seq2: B6Ng01-035I20.g_78_484 (reverse)

seq1  ATAAATTATACACACACACATCTCCATTTCACTAACTTCTAACACTATCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATTATACACACACACATCTCCATTTCACTAACTTCTAACACTATCA  50

seq1  TCATTTTTTACAAAGTGTGTGTGTTGCTTTTTCTTTCTGATTTCTCAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTTTACAAAGTGTGTGTGTTGCTTTTTCTTTCTGATTTCTCAGGG  100

seq1  GTGTAAGGCATCTCACTGCTCACTAAGACAACGCCCGTGAACATCAAGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAAGGCATCTCACTGCTCACTAAGACAACGCCCGTGAACATCAAGAC  150

seq1  CCGGGGTGGAAGAGGTGAAGCCTCCTGAGGCCTGCCTGTGCGCTTGCTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGGGTGGAAGAGGTGAAGCCTCCTGAGGCCTGCCTGTGCGCTTGCTTC  200

seq1  TCTGAGAATTGAAGCTCTCCATCCTCTTTCCATTAGTGCCCTATTTTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGAATTGAAGCTCTCCATCCTCTTTCCATTAGTGCCCTATTTTTCT  250

seq1  CATAAATTTTCATTTGTTCTTAATGAAGATACCAATTTTTGTACATTTGC  300
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CATAAATTTTCATTTGTTATTAATGAAGATACCAATTTTTGTACATTTGC  300

seq1  TTTCTGCAAATTCACACCAGCAGATACCAACAGTATCTTAAATCAGTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGCAAATTCACACCAGCAGATACCAACAGTATCTTAAATCAGTTTC  350

seq1  TTTCAAACAGGGTCTCATGTAGCTCAGGCTGGCCTCCACTGACTAAGTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAACAGGGTCTCATGTAGCTCAGGCTGGCCTCCACTGACTAAGTAG  400

seq1  CGAAACA  407
      |||||||
seq2  CGAAACA  407