BAC Information

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BAC

Clone NameB6Ng01-035K21
Chromosome11 (Build37)
Map Location 58,600,821 - 58,751,570
singlet/doubletdoublet
Overlap gene3100002J23Rik, Olfr313, Olfr312, GA_x5J8B7W3UM0-1747565-1747342, Olfr311, 2810021J22Rik, Zfp39, Butr1, Rnf187, LOC676691
Upstream geneGalnt10, Sap30l, Hand1, LOC624605, Larp1, LOC676527, LOC667947, Cnot8, Gemin5, Mrpl22, Irgb10, Igtp, LOC263305, LOC100041816, EG668249, 4930438A08Rik, Zfp692, Zfp672, 1700047K16Rik, Sh3bp5l, 2210415F13Rik, LOC624814, 1810065E05Rik, OTTMUSG00000005737, 4930504O13Rik, Olfr30, Olfr333-ps1, Olfr332, Olfr331, Olfr330, Olfr329, Olfr328, Olfr327-ps1, Olfr325, Olfr324, 2210407C18Rik, Olfr323, Trim58, Olfr216, OTTMUSG00000005755, Olfr320, LOC668058, Olfr319, Olfr318, Olfr317, Olfr316, Olfr315, Olfr314
Downstream geneHist3h2ba, Hist3h2bb, Hist3h2a, LOC382523, Trim17, Trim11, Obscn, A230051G13Rik, 4930543L23Rik, Gja12, Guk1, Mrpl55, 2310033P09Rik, Arf1, Wnt3a, Wnt9a, Gm249, 1110031B06Rik, Jmjd4, BC050078, LOC432565, Zkscan17, Nlrp3, Olfr222, LOC668157, Olfr223, GA_x5J8B7W3UM0-970645-971221, Olfr225, AA536749, 4933433K01Rik, Flcn, Cops3, Nt5m
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-035K21.bB6Ng01-035K21.g
ACCDH864083DH864084
length923970
definitionDH864083|Mus musculus domesticus DNA, BAC clone: B6Ng01-035K21, 5' end.DH864084|Mus musculus domesticus DNA, BAC clone: B6Ng01-035K21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,600,821 - 58,601,727)(58,750,581 - 58,751,570)
sequence
gaattccaaactcttgctgattttttttttccaccttaactcgacacgtc
tatcctgtggctagaacttggggaacctgaggagcctcagcaaaagtaac
actatgtttctttgtcctgcctctcggtttcatagatccgtttgttctta
ctgtgggagttagcaaaacctagcagactatttctcccattagtaataat
ggaaagcttctgtagtttaacttagtaagtgctttacagcttgtctttaa
catggagacttctgtatcacgatttttgcactttgaggcatttaccggat
gaaattaaagatcactagaactgaggtagctcttacgtgacagatagatg
gatagcatatactgagtggatacgcgggccagaagtaggtaccaggactg
tacgaaatatcaatctgcactcagaaggcagcactgtagggggatgagtt
gactatttctggaacgtttttttcagttggcaattgtcgcaagtagctgt
gatcatggaaagcaaagccgcccctaaggggtgtgtgtgcacctgtccct
gtgtctcggttatttgctctgttcctttgaggttttggttaaacgtcatg
ctggcagctgattgtggagccaccttctcatttcaaactaaaatctcaaa
agactgaaaaaaaatcacaaattctcggtgacacgttctcatgcctcccc
acacaagaatgtttaatacaccaccatcaaagaatggagcaaccctgagg
actaactgccaccttgttttgcgttggagtgactgaagcacagcttcgag
ctgaaggcactctccagccagtctactgacctcttccctgtactgtcaca
aagatgcaaaactcaaagacacagactctttgagccatttctatgaaatc
tgtcatggatcatcaattctatc
gaattcccctcaagtcccgatcccattcctcaaggcctcttgctcctatc
ccggtgtgatttcatcggtgcaagccccgcccatccacttgcttatggag
acctgagagtggtctttggtctaccagttaccatttgcagccctctgagg
ggctgtcggtccacctcattcaggaaccttctctgctatactctcttggt
cattgcacgtagcacctgccaccgggcagaaaccgactattagactctgt
gtgaagatgggttgcagggatctagatagagtatcatccctgacccagag
agagatgtctgaatagccaggtaggaaagccgtggtctccgcccgacagg
agagaaaatcgtagcttagcgtgtttgagggtgctgttatccttatgttc
tgcaatgatgcaccatgagcctctggaataagttgtgaagaacacttttg
aggtggaggcctgtggttacatccaggtcccaaactgaggtagatacact
ctgtcagaacatactgctggggttgtcctatggtttgtcgtccccttact
aagacagcaatctccacaaagaccaagcaggacacagagaagtcaggaaa
gtcactgtcttaaatcaagctgacactaaaggggacctacctaaaatcct
ggaatcacacagctgaccttgaattgcctgctgtacacctagttctgaag
aggtagaagcacaggagacccttttacgaaacaaccactttccagcagag
accggacgagtagttccagtcgccagactgctgatcgggtgttcaaatcc
ttcttcccaggctctaaccagcttctctctcccagagacaggctctgtgg
aaatcatgagaagacttaatgatgctcggactgcatggtcagcagatcag
cgctgctggtggaagtaagtggctctcctggatatggggagctagcagca
accaactgactgctggagtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_58600821_58601727
seq2: B6Ng01-035K21.b_80_969

seq1  CCTTAACTCGACACGTCTATCCTGTGGCTAGAACTTGGGGAACCTGAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAACTCGACACGTCTATCCTGTGGCTAGAACTTGGGGAACCTGAGGA  50

seq1  GCCTCAGCAAAAGTAACACTATGTTTCTTTGTCCTGCCTCTCGGTTTCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCAGCAAAAGTAACACTATGTTTCTTTGTCCTGCCTCTCGGTTTCAT  100

seq1  AGATCCGTTTGTTCTTACTGTGGGAGTTAGCAAAACCTAGCAGACTATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCGTTTGTTCTTACTGTGGGAGTTAGCAAAACCTAGCAGACTATTT  150

seq1  CTCCCATTAGTAATAATGGAAAGCTTCTGTAGTTTAACTTAGTAAGTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCATTAGTAATAATGGAAAGCTTCTGTAGTTTAACTTAGTAAGTGCT  200

seq1  TTACAGCTTGTCTTTAACATGGAGACTTCTGTATCACGATTTTTGCACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGCTTGTCTTTAACATGGAGACTTCTGTATCACGATTTTTGCACTT  250

seq1  TGAGGCATTTACCGGATGAAATTAAAGATCACTAGAACTGAGGTAGCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCATTTACCGGATGAAATTAAAGATCACTAGAACTGAGGTAGCTCT  300

seq1  TACGTGACAGATAGATGGATAGCATATACTGAGTGGATACGCGGGCCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGTGACAGATAGATGGATAGCATATACTGAGTGGATACGCGGGCCAGA  350

seq1  AGTAGGTACCAGGACTGTACGAAATATCAATCTGCACTCAGAAGGCAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGTACCAGGACTGTACGAAATATCAATCTGCACTCAGAAGGCAGCA  400

seq1  CTGTAGGGGGATGAGTTGACTATTTCTGGAACGTTTTTTTCAGTTGGCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGGGGGATGAGTTGACTATTTCTGGAACGTTTTTTTCAGTTGGCAA  450

seq1  TTGTCGCAAGTAGCTGTGATCATGGAAAGCAAAGCCGCCCCTAAGGGGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCGCAAGTAGCTGTGATCATGGAAAGCAAAGCCGCCCCTAAGGGGTG  500

seq1  TGTGTGCACCTGTCCCTGTGTCTCGGTTATTTGCTCTGTTCCTTTGAGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGCACCTGTCCCTGTGTCTCGGTTATTTGCTCTGTTCCTTTGAGGT  550

seq1  TTTGGTTAAACGTCATGCTGGCAGCTGATTGTGGAGCCACCTTCTCATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTTAAACGTCATGCTGGCAGCTGATTGTGGAGCCACCTTCTCATTT  600

seq1  CAAACTAAAATCTCAAAAGACTGAAAAAAAATCACAAATTCTCGGTGACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTAAAATCTCAAAAGACTGAAAAAAAATCACAAATTCTCGGTGACA  650

seq1  CGTTCTCATGCCTCCCCACACAAGAATGTTTAATACACCACCATCAAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTCTCATGCCTCCCCACACAAGAATGTTTAATACACCACCATCAAAGA  700

seq1  ATGGAGCAACCCTGAGGACTAACTGCCACCTTGTTTTGCGTTGGAGTGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGCAACCCTGAGGACTAACTGCCACCTTGTTTTGCGTTGGAGTGAC  750

seq1  TGAAGCACAGCTTCGAGCTGAAGGGCACTCTCCAGCCAGTTCTACTGACC  800
      |||||||||||||||||||||| |||||||||||||||| ||||||||||
seq2  TGAAGCACAGCTTCGAGCTGAA-GGCACTCTCCAGCCAG-TCTACTGACC  798

seq1  TCTTCCCTTGTACCTGTCACCAAAAGATGCAAAACTCAAAAGGACACAGA  850
      ||||||| |||| |||||||  ||||||||||||||||||  ||||||| 
seq2  TCTTCCC-TGTA-CTGTCAC--AAAGATGCAAAACTCAAA--GACACAG-  841

seq1  ACTCCTTTGAGCCCATTTCTAATGAAAATCTGTCCATGGATTCAATCCAA  900
      ||| ||||||| |||||||| ||| |||||||| |||||| |||   |||
seq2  ACT-CTTTGAG-CCATTTCT-ATG-AAATCTGT-CATGGA-TCA--TCAA  883

seq1  TTCTATC  907
      |||||||
seq2  TTCTATC  890

seq1: chr11_58750581_58751570
seq2: B6Ng01-035K21.g_65_1034 (reverse)

seq1  AACTCCAGCAGCTCAGCTTGGTTGCCCTGCTAGCTCCCCATATCCAGGAG  50
      ||||||||||| |||| |||||||  ||||||||||||||||||||||||
seq2  AACTCCAGCAG-TCAG-TTGGTTG--CTGCTAGCTCCCCATATCCAGGAG  46

seq1  AGCCCACTTACCTTCCACACAGCAGCCGCTGATTCTGCCTGACCATGCAG  100
      || ||||||| ||||||| |||||| |||||| |||| ||||||||||||
seq2  AG-CCACTTA-CTTCCAC-CAGCAG-CGCTGA-TCTG-CTGACCATGCAG  90

seq1  GTCCCGGGCATCATTTAAGTCCTTCCTCATGATTTCCACAGAGCCCTTGT  150
         ||| |||||| |||||||  | ||||||||||||||||||||  || 
seq2  --TCCGAGCATCA-TTAAGTC--TTCTCATGATTTCCACAGAGCC--TG-  132

seq1  TCTCCTGGGAGAGAGAAGCTGGTTAGAGCCTGGGAAGAAGGATTTGAACA  200
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCT-CTGGGAGAGAGAAGCTGGTTAGAGCCTGGGAAGAAGGATTTGAACA  181

seq1  CCCCGATCAGCAGTCTGGCGACTGGAACTACTCGTCCGGTCTCTGCTGGA  250
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -CCCGATCAGCAGTCTGGCGACTGGAACTACTCGTCCGGTCTCTGCTGGA  230

seq1  AAGTGGTTGTTTCGTAAAAGGGTCTCCTGTGCTTCTACCTCTTCAGAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGTTGTTTCGTAAAAGGGTCTCCTGTGCTTCTACCTCTTCAGAACT  280

seq1  AGGTGTACAGCAGGCAATTCAAGGTCAGCTGTGTGATTCCAGGATTTTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTACAGCAGGCAATTCAAGGTCAGCTGTGTGATTCCAGGATTTTAG  330

seq1  GTAGGTCCCCTTTAGTGTCAGCTTGATTTAAGACAGTGACTTTCCTGACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGTCCCCTTTAGTGTCAGCTTGATTTAAGACAGTGACTTTCCTGACT  380

seq1  TCTCTGTGTCCTGCTTGGTCTTTGTGGAGATTGCTGTCTTAGTAAGGGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTGTCCTGCTTGGTCTTTGTGGAGATTGCTGTCTTAGTAAGGGGA  430

seq1  CGACAAACCATAGGACAACCCCAGCAGTATGTTCTGACAGAGTGTATCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACAAACCATAGGACAACCCCAGCAGTATGTTCTGACAGAGTGTATCTA  480

seq1  CCTCAGTTTGGGACCTGGATGTAACCACAGGCCTCCACCTCAAAAGTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGTTTGGGACCTGGATGTAACCACAGGCCTCCACCTCAAAAGTGTT  530

seq1  CTTCACAACTTATTCCAGAGGCTCATGGTGCATCATTGCAGAACATAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACAACTTATTCCAGAGGCTCATGGTGCATCATTGCAGAACATAAGG  580

seq1  ATAACAGCACCCTCAAACACGCTAAGCTACGATTTTCTCTCCTGTCGGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAGCACCCTCAAACACGCTAAGCTACGATTTTCTCTCCTGTCGGGC  630

seq1  GGAGACCACGGCTTTCCTACCTGGCTATTCAGACATCTCTCTCTGGGTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACCACGGCTTTCCTACCTGGCTATTCAGACATCTCTCTCTGGGTCA  680

seq1  GGGATGATACTCTATCTAGATCCCTGCAACCCATCTTCACACAGAGTCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGATACTCTATCTAGATCCCTGCAACCCATCTTCACACAGAGTCTA  730

seq1  ATAGTCGGTTTCTGCCCGGTGGCAGGTGCTACGTGCAATGACCAAGAGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTCGGTTTCTGCCCGGTGGCAGGTGCTACGTGCAATGACCAAGAGAG  780

seq1  TATAGCAGAGAAGGTTCCTGAATGAGGTGGACCGACAGCCCCTCAGAGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGCAGAGAAGGTTCCTGAATGAGGTGGACCGACAGCCCCTCAGAGGG  830

seq1  CTGCAAATGGTAACTGGTAGACCAAAGACCACTCTCAGGTCTCCATAAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAATGGTAACTGGTAGACCAAAGACCACTCTCAGGTCTCCATAAGC  880

seq1  AAGTGGATGGGCGGGGCTTGCACCGATGAAATCACACCGGGATAGGAGCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGATGGGCGGGGCTTGCACCGATGAAATCACACCGGGATAGGAGCA  930

seq1  AGAGGCCTTGAGGAATGGGATCGGGACTTGAGGGGAATTC  990
      ||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCCTTGAGGAATGGGATCGGGACTTGAGGGGAATTC  970