BAC Information

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BAC

Clone NameB6Ng01-036E03
Chromosome11 (Build37)
Map Location 6,118,563 - 6,265,692
singlet/doubletdoublet
Overlap geneNpc1l1, LOC100041242, LOC665250, Ddx56, Tmed4, Ogdh, LOC100042227
Upstream geneKremen1, Znrf3, LOC100042016, LOC382478, Xbp1, Ccdc117, LOC100041183, Ankrd36, LOC665181, Mrps24, 2010005J08Rik, 2210015D19Rik, Dbnl, Pgam2, Polm, Aebp1, Pold2, Myl7, Gck, Ykt6, Camk2b, LOC100042156, Nudcd3, LOC100042173
Downstream geneZmiz2, Ppia, H2afv, LOC665277, LOC665283, LOC626342, Purb, Myo1g, LOC100041286, Ccm2, LOC665327, AB182283, Tbrg4, Wap, LOC100041311, Ramp3, LOC665314, LOC626419, LOC665339, LOC665343, LOC100041332, Adcy1, LOC100041347, Igfbp1, Igfbp3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-036E03.bB6Ng01-036E03.g
ACCDH864494DH864495
length895704
definitionDH864494|Mus musculus domesticus DNA, BAC clone: B6Ng01-036E03, 5' end.DH864495|Mus musculus domesticus DNA, BAC clone: B6Ng01-036E03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,118,563 - 6,119,444)(6,264,994 - 6,265,692)
sequence
gaattcactggcatactggattttctgggttagggagaagctctcacagc
ctgcactagagcaaatggcgttcatgcctgcctcggtggaaaagttgtag
cctgaggtggtgtcaaagtacactggaggccccacttccaagtaccggtt
cagaaagaggaagtagtctatcaggtaggaatcctgggaaagaagaggat
ctgtgagtgtaggaaatatccacagtgggtccgccccaggtcagagcaca
gtctcagaagtccatgcagatgtatctggaagcagaagacacactcagag
gtacacgaggtagatgagatgctcggaggcagactcagggacgcactcag
atacacgtgctcagaacactcagagacacatgctcagaacactcagagat
gcatgctcagaacactcagagacacatgctcagaaacctactcagaaatg
tacagactacatgtgtacatatatacaagatacaggctgaggtacacaca
gcactatgtacttcgaggaacatgcccagatacaaacataaaagggcaca
ccaagatacacacagagagggccccaggcgatgccaataggcccacagat
gcactgtaagaatttcagaaaaaagccaggcctggtggcacacgcctttt
aattccagcactcgggaggcagaggcaggcagatttctgagttcaaggcc
agcctggtctacaaagtgagtttctagccagggctatacagagaaccctg
tctcgaaaaacaaaaactaaacaaaacaaatcagaaaaggatgaaaatga
aagaatctggatgtgatcttggagaagcattgctcaaactccccccatat
ctatgaagaagagcacgaatatcaaacctgaagtatttctgggga
gaattcagatccccggaactgaagttacaggcagttgttagctgccatgt
gggtgctgggaattgaaccagtatcctctggaagagcaaccagtgctctt
aaccactgagccatctcttcagctcctccctcccccaaaagttctcaaag
gcaaaaatgttattcttctttcttagtacattctcctacttactaatgtc
tgtcagcatccttaaaaagccaaccacttaccagctaacccttgcccgct
cactcagcagccaagatgtgatatgatatcttcatccctccctagctggt
taacggatctgtttttacagacaaggcaatggacaagcaatgttgccatc
tttctgagaaaggaagaatggtattgggtgatggctcagaatgacactgg
gaaaatcccagcaagaccattgacagatactgatgtggtcctaagtgaga
gacgtgaagccggaagactgagaaacttcaggccattgcaatagtttgaa
tgaaaatggtcccataggcccatagggactggtactgttgggaggtgtgg
cctttgttggaggaagtgtatcactggggggcaggctttgtgggtctcaa
aagctcaaaccaggcctagcgtggggctcactgactcttctgctgcctgt
tgaatcgagacgcaaaactctcagctactcttccagaatcatgtctgcct
gcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_6118563_6119444
seq2: B6Ng01-036E03.b_45_919

seq1  GAATTCACTGGCATACTGGATTTTCTGGGTTAGGGAGAAGCTCTCACAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGGCATACTGGATTTTCTGGGTTAGGGAGAAGCTCTCACAGC  50

seq1  CTGCACTAGAGCAAATGGCGTTCATGCCTGCCTCGGTGGAAAAGTTGTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACTAGAGCAAATGGCGTTCATGCCTGCCTCGGTGGAAAAGTTGTAG  100

seq1  CCTGAGGTGGTGTCAAAGTACACTGGAGGCCCCACTTCCAAGTACCGGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGGTGGTGTCAAAGTACACTGGAGGCCCCACTTCCAAGTACCGGTT  150

seq1  CAGAAAGAGGAAGTAGTCTATCAGGTAGGAATCCTGGGAAAGAAGAGGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGAGGAAGTAGTCTATCAGGTAGGAATCCTGGGAAAGAAGAGGAT  200

seq1  CTGTGAGTGTAGGAAATATCCACAGTGGGTCCGCCCCAGGTCAGAGCACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAGTGTAGGAAATATCCACAGTGGGTCCGCCCCAGGTCAGAGCACA  250

seq1  GTCTCAGAAGTCCATGCAGATGTATCTGGAAGCAGAAGACACACTCAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAGAAGTCCATGCAGATGTATCTGGAAGCAGAAGACACACTCAGAG  300

seq1  GTACACGAGGTAGATGAGATGCTCGGAGGCAGACTCAGGGACGCACTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACACGAGGTAGATGAGATGCTCGGAGGCAGACTCAGGGACGCACTCAG  350

seq1  ATACACGTGCTCAGAACACTCAGAGACACATGCTCAGAACACTCAGAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACGTGCTCAGAACACTCAGAGACACATGCTCAGAACACTCAGAGAT  400

seq1  GCATGCTCAGAACACTCAGAGACACATGCTCAGAAACCTACTCAGAAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCTCAGAACACTCAGAGACACATGCTCAGAAACCTACTCAGAAATG  450

seq1  TACAGACTACATGTGTACATATATACAAGATACAGGCTGAGGTACACACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGACTACATGTGTACATATATACAAGATACAGGCTGAGGTACACACA  500

seq1  GCACTATGTACTTCGAGGAACATGCCCAGATACAAACATAAAAGGGCACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTATGTACTTCGAGGAACATGCCCAGATACAAACATAAAAGGGCACA  550

seq1  CCAAGATACACACAGAGAGGGCCCCAGGCGATGCCAATAGGCCCACAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGATACACACAGAGAGGGCCCCAGGCGATGCCAATAGGCCCACAGAT  600

seq1  GCACTGTAAGAATTTCAGAAAAAAGCCAGGCCTGGTGGCACACGCC-TTT  649
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GCACTGTAAGAATTTCAGAAAAAAGCCAGGCCTGGTGGCACACGCCTTTT  650

seq1  AATTCCAGCACTCGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCAAGGCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCAGCACTCGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCAAGGCC  700

seq1  AGCCTGGTCTACAAAGTGAGTTTCCAGCCAGGGCTATACAGAGAAACCCT  749
      |||||||||||||||||||||||| |||||||||||||||||| ||||||
seq2  AGCCTGGTCTACAAAGTGAGTTTCTAGCCAGGGCTATACAGAG-AACCCT  749

seq1  GTCTCGAAAAACAAAAAACAAAAACAAAAACAAAATCAGAAAAGGAAGAA  799
      |||||||||||||||||    ||||||||   |||||||||||||| | |
seq2  GTCTCGAAAAACAAAAA--CTAAACAAAA--CAAATCAGAAAAGGATG-A  794

seq1  AAATGAAAGAATCTGGATGTGATCTTTGAAGAAGCAGTAGCCAAAACT-C  848
      |||||||||||||||||||||||| ||| ||||||| | ||  ||||| |
seq2  AAATGAAAGAATCTGGATGTGATC-TTGGAGAAGCA-TTGCTCAAACTCC  842

seq1  CCCCAAATCGATGAAAGAGAGGCACGAATATCAA  882
      ||||| ||| |||||  ||| |||||||||||||
seq2  CCCCATATCTATGAAGAAGA-GCACGAATATCAA  875

seq1: chr11_6264994_6265692
seq2: B6Ng01-036E03.g_69_772 (reverse)

seq1  GTGCAGGCAGACATGATTCTGGAAGAGTAGCTGAGAGTTCTGCGTCTCGA  50
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GTGCAGGCAGACATGATTCTGGAAGAGTAGCTGAGAGTTTTGCGTCTCGA  50

seq1  -TCCACAGGCAGCAGGAAGAGTCAGTGAG-CCCACGCTAGGCCTGGTTTG  98
       || |||||||||| |||||||||||||| ||||||||||||||||||||
seq2  TTCAACAGGCAGCA-GAAGAGTCAGTGAGCCCCACGCTAGGCCTGGTTTG  99

seq1  AGCTTTTGAGA-CCACAAAGCCTG-CCCCCAGTGATACACTTCCTCCAAC  146
      ||||||||||| |||||||||||| |||||||||||||||||||||||||
seq2  AGCTTTTGAGACCCACAAAGCCTGCCCCCCAGTGATACACTTCCTCCAAC  149

seq1  -AAGGCCACACCTCCCAACAGTACCAGTCCCTATGGGCCTATGGGACCAT  195
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCCACACCTCCCAACAGTACCAGTCCCTATGGGCCTATGGGACCAT  199

seq1  TTTCATTCAAACTATTGCAATGGCCTGAAG-TTCTCAGTCTTCCGGCTTC  244
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TTTCATTCAAACTATTGCAATGGCCTGAAGTTTCTCAGTCTTCCGGCTTC  249

seq1  ACGTCTCTCACTTAGGACCACATCAGTATCTGTCAATGGTCTTGCTGGGA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTCTCTCACTTAGGACCACATCAGTATCTGTCAATGGTCTTGCTGGGA  299

seq1  TTTTCCCAGTGTCATTCTGAGCCATCACCCAATACCATTCTTCCTTTCTC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCCAGTGTCATTCTGAGCCATCACCCAATACCATTCTTCCTTTCTC  349

seq1  AGAAAGATGGCAACATTGCTTGTCCATTGCCTTGTCTGTAAAAACAGATC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGATGGCAACATTGCTTGTCCATTGCCTTGTCTGTAAAAACAGATC  399

seq1  CGTTAACCAGCTAGGGAGGGATGAAGATATCATATCACATCTTGGCTGCT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTAACCAGCTAGGGAGGGATGAAGATATCATATCACATCTTGGCTGCT  449

seq1  GAGTGAGCGGGCAAGGGTTAGCTGGTAAGTGGTTGGCTTTTTAAGGATGC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGAGCGGGCAAGGGTTAGCTGGTAAGTGGTTGGCTTTTTAAGGATGC  499

seq1  TGACAGACATTAGTAAGTAGGAGAATGTACTAAGAAAGAAGAATAACATT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGACATTAGTAAGTAGGAGAATGTACTAAGAAAGAAGAATAACATT  549

seq1  TTTGCCTTTGAGAACTTTTGGGGGAGGGAGGAGCTGAAGAGATGGCTCAG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCTTTGAGAACTTTTGGGGGAGGGAGGAGCTGAAGAGATGGCTCAG  599

seq1  TGGTTAAGAGCACTGGTTGCTCTTCCAGAGGATACTGGTTCAATTCCCAG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTAAGAGCACTGGTTGCTCTTCCAGAGGATACTGGTTCAATTCCCAG  649

seq1  CACCCACATGGCAGCTAACAACTGCCTGTAACTTCAGTTCCGGGGATCTG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCACATGGCAGCTAACAACTGCCTGTAACTTCAGTTCCGGGGATCTG  699

seq1  AATTC  699
      |||||
seq2  AATTC  704