BAC Information

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BAC

Clone NameB6Ng01-036O19
Chromosome11 (Build37)
Map Location 97,829,699 - 97,830,721
singlet/doubletsinglet
Overlap genePlxdc1
Upstream geneSp2, Sp6, Scrn2, Lrrc46, Mrpl10, Osbpl7, Tbx21, Tbkbp1, Kpnb1, Npepps, EG665490, Mrpl45, Gpr179, Socs7, 4933428G20Rik, P140, 2410003L11Rik, E130012A19Rik, Mllt6, Mel13, Pcgf2, Psmb3, Pip5k2b, 2810474C18Rik, Ccdc49, LOC100040708, 1700001P01Rik, Rpl23, Lasp1, B230217C12Rik, Fbxo47
Downstream geneArl5c, Cacnb1, Rpl19, Stac2, Fbxl20, LOC665606, Pparbp, LOC666613, LOC100039982, Crkrs, Neurod2, Ppp1r1b, Stard3, Tcap, Pnmt, Perld1, Erbb2, 1810046J19Rik, Grb7, Ikzf3, Zpbp2, Ormdl3, Gm12, LOC100040117, Gsdm3, Gsdm2, Gsdm1, Psmd3, Csf3, Thrap4, Thra, Nr1d1, 4121402D02Rik, Casc3, Rapgefl1, Wipf2, Cdc6, Rara
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-036O19.b
ACCDH864951
length1,018
definitionDH864951|Mus musculus domesticus DNA, BAC clone: B6Ng01-036O19, 5' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttctccgatttctatttgtgattcccttccttgcacaattgtgg
tggagattcctgacacactgcacacgccacccacacacacactgttccgg
tactaaaaccacccaactgttcgcgccccaggtgaatgggggctatatct
gcaccccaccgggccccccaacattacctcccatttgcctatccttccaa
ctgggctcttgactgtgaaatctggtataatgttccactggggggacctt
cctttgggtgcgatccttaggagagatgttctgcttctttgtttgattag
gtttgattttttgctttttgtttttttttgggggggggaacctgtgtttt
ctctcttctgcaaactcctgaatttaaaatatgtagcccttcaccttcag
ccagtgtgctgtggtcaccgtcatgctcgccactgccctctgtggctatg
ccgcagccgcggctgcccgaggcctcctgcaccccgtctcggctctcagc
cccgccaccaccactgtctgttccatttgctgctattctcatgggtcaca
cgagacagatgaggagtttgatgcttgctgggtgacatacttcaacaaac
cagacactgatgcctgggaattgcgtaaagggatgaatacacttgttggc
tatgatctggtttctgagccccaaatcagtgatgctgcgttgtgggcatg
gagatggttaaatgattttgctagtgctgttcgcatcttggaggttgtta
aggacaaagcaggacttcataaggaaatctacccctatgtcatccaggaa
cttaaccaacttttaaatgaactggaatctccagtccagagtactggcct
tgacaaattgtaactcccttccatgggctttcccaaggacttactgctgt
tgctacttgattgaaacagttgcctggaaatgttttattgacaaatttcc
ttgagttccaccccgtatagcaatttggactttataaggaatgagttcac
tgaaaaaaaaaagccttg
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_97829699_97830721
seq2: B6Ng01-036O19.b_63_1061

seq1  ATTTGTGATTGTGATCCTTGCACACTTGTGATGGCACACACACACACACA  50
      ||||||||||    |||||||||| ||||| ||| | |  | |  |||||
seq2  ATTTGTGATTCCCTTCCTTGCACAATTGTGGTGG-AGATTC-CTGACACA  48

seq1  C-ACACACACACACACACACACACACAAATACAGTAACCAAAAGAAAGAA  99
      |  ||||| | ||| |||||||||||   | | |||   |||  |   ||
seq2  CTGCACACGC-CACCCACACACACACTGTTCCGGTACTAAAACCACCCAA  97

seq1  ATGTTTGCCGGTGAGGTGAATGGGGCAGAGATCTGCACCCAAACGGTTCC  149
       |||| ||     ||||||||||||   | |||||||||| | |||  ||
seq2  CTGTTCGCGCCCCAGGTGAATGGGGGCTATATCTGCACCCCACCGGGCCC  147

seq1  GTTAACATTATCTCCTATTTTCCTCTCACCTCAGCTGTGCACTTGATAAG  199
         ||||||| |||| |||| ||| ||    || ||| || |||||    
seq2  CCCAACATTACCTCCCATTTGCCTATCCTTCCAACTGGGCTCTTGACTGT  197

seq1  GAACTCTGGTATAATGTACCACTGATGGGACCTTTCAGAATGGTGCGATC  249
      ||| ||||||||||||| ||||||  |||||| |||     |||||||||
seq2  GAAATCTGGTATAATGTTCCACTGGGGGGACC-TTCCTTTGGGTGCGATC  246

seq1  CTTAGGAGAGATTCACGAAGTTCTTGAATGATTA-GCTTGATTACCACAA  298
      ||||||||||||   |    |  |||  |||||| | ||||||       
seq2  CTTAGGAGAGATGTTCTGCTTCTTTGTTTGATTAGGTTTGATT-----TT  291

seq1  GAGC---AAGCTGTTAGAAGGTGAGACCAACCTGTGTTTTCTCTCTTCTG  345
        ||     | | ||    || | |   ||||||||||||||||||||||
seq2  TTGCTTTTTGTTTTTTTTTGGGGGGGGGAACCTGTGTTTTCTCTCTTCTG  341

seq1  CAAACTCCTGAATTTAAAATATGTAGCCCTTCACCTTCAGCCAGTGTGCT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTCCTGAATTTAAAATATGTAGCCCTTCACCTTCAGCCAGTGTGCT  391

seq1  GTGGTCACCGTCATGCTCGCCACTGCCCTCTGTGGCTATGCCGCAGCCGC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTCACCGTCATGCTCGCCACTGCCCTCTGTGGCTATGCCGCAGCCGC  441

seq1  GGCTGCCCGAGGCCTCCTGCACCCCGTCTCGGCTCTCAGCCCCGCCACCA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCCCGAGGCCTCCTGCACCCCGTCTCGGCTCTCAGCCCCGCCACCA  491

seq1  CCACTGTCTGTTCCATTTGCTGCTATTCTCATGGGTCACACGAGACAGAT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGTCTGTTCCATTTGCTGCTATTCTCATGGGTCACACGAGACAGAT  541

seq1  GAGGAGTTTGATGCTTGCTGGGTGACATACTTCAACAAACCAGACACTGA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGTTTGATGCTTGCTGGGTGACATACTTCAACAAACCAGACACTGA  591

seq1  TGCCTGGGAATTGCGTAAAGGGATGAATACACTTGTTGGCTATGATCTGG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGGGAATTGCGTAAAGGGATGAATACACTTGTTGGCTATGATCTGG  641

seq1  TTTCTGAGCCCCAAATCAGTGATGCTGCGTTGTGGGCATGGAGATGGTTA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGAGCCCCAAATCAGTGATGCTGCGTTGTGGGCATGGAGATGGTTA  691

seq1  AATGATTTTGCTAGTGCTGTTCGCATCTTGGAGGTTGTTAAGGACAAAGC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATTTTGCTAGTGCTGTTCGCATCTTGGAGGTTGTTAAGGACAAAGC  741

seq1  AGGACTTCATAAGGAAATCTACCCCTATGTCATCCAGGAACTTAGACCAA  795
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AGGACTTCATAAGGAAATCTACCCCTATGTCATCCAGGAACTTA-ACCAA  790

seq1  C-TTTAAATGAACTGGGAATCTCCAGTCCAGAGTAACTGGGCCTTGACAA  844
      | |||||||||||| ||||||||||||||||||| ||| |||||||||||
seq2  CTTTTAAATGAACT-GGAATCTCCAGTCCAGAGT-ACT-GGCCTTGACAA  837

seq1  AGTGTAAACTCCCTTCCATGGGC-TTCCCAAGGACTTAACTGCTGTTGCT  893
      | ||| ||||||||||||||||| ||||||||||||| ||||||||||||
seq2  ATTGT-AACTCCCTTCCATGGGCTTTCCCAAGGACTT-ACTGCTGTTGCT  885

seq1  ACTTGATTGAAACAGTTGCCTGGAAATGTTTTTATTTGAACAAATTTTCC  943
      |||||||||||||||||||||||||||| |||||||   ||||||||  |
seq2  ACTTGATTGAAACAGTTGCCTGGAAATG-TTTTATT--GACAAATTT--C  930

seq1  TTTGAGTATCCAACCACGTAATAGCAACTTGGACTTTAATAAAGGGAAAT  993
       |||||| ||| ||| ||| ||||||| ||||||||| ||||   | |||
seq2  CTTGAGT-TCC-ACCCCGT-ATAGCAATTTGGACTTT-ATAA---GGAAT  973

seq1  GAGTTTTAACTGAAAAAAAAAAAAGCCTTG  1023
      |||  || ||||  ||||||||||||||||
seq2  GAG--TTCACTG--AAAAAAAAAAGCCTTG  999