BAC Information

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BAC

Clone NameB6Ng01-037B21
Chromosome11 (Build37)
Map Location 100,904,220 - 101,056,226
singlet/doubletdoublet
Overlap geneAtp6v0a1, Naglu, Hsd17b1, Coasy, Mlx, Psmc3ip, 1300010M03Rik, Tubg1, Tubg2, Plekhh3, Ccr10, Cntnap1, Ezh1
Upstream geneKrt31, Krt32, Krt35, Krt36, Krt13, Krt15, Krt19, Krt9, Krt14, Ka11p, LOC666128, Krt16, Krt17, Krt42, LOC100041796, LOC100040491, Eif1, Gast, Hap1, LOC100041835, Jup, 1110036O03Rik, Fkbp10, Nt5c3l, Klhl10, Klhl11, Acly, Ttc25, Cnp1, Dnajc7, Nkiras2, A930006D11Rik, D11Lgp2e, Gcn5l2, Hspb9, Rab5c, LOC380728, Hcrt, Ghdc, Stat5b, Stat5a, Stat3, Ptrf
Downstream geneRamp2, Vps25, Wnk4, Ccdc56, Cntd1, Becn1, Psme3, Aoc2, Aoc3, LOC629949, G6pc, Aarsd1, 1700113I22Rik, Rundc1, Rpl27, Ifi35, Vat1, Rnd2, Brca1, Nbr1, Tmem106a, LOC667306, Rdm1, Arl4d, LOC100038842, Dhx8, Etv4, Meox1, LOC194960, Sost, Dusp3, 1700006E09Rik, Mpp3, Cd300lg, Mpp2, Ppy, Pyy, LOC100040687, LOC666411, Nags, Tmem101, Lsm12, G6pc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-037B21.bB6Ng01-037B21.g
ACCDH865089DH865090
length999854
definitionDH865089|Mus musculus domesticus DNA, BAC clone: B6Ng01-037B21, 5' end.DH865090|Mus musculus domesticus DNA, BAC clone: B6Ng01-037B21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,904,220 - 100,905,221)(101,055,374 - 101,056,226)
sequence
gaattctttgtgtaacatcttccagttttctgtccttgtcacagatttgg
aacattgcaaccaacaagctgaccttcctcaactccttcaagatgaagat
gtctgttatcctcggcatcatccacatgctgtttggagtcagcctgagcc
ttttcaaccatatgtgagtccctctgtccctgtcatcacacattagccag
gtgacatctttgcctaaaggcatctcctctggagaggaatcagtaagtca
gggctccggtctatattgtagaagcaatctctattatacaatcctcatgg
tcttaaatgaagcttcatattagttcctgatctgtttataggtacaaaaa
aaatgatctttgaaaaaaaaaaagatgcagcaattttcctgtgatttagt
gaattcctattttgcactctgtgtatgtggtggttgtgtgcacatgtgtg
ttgtgtgcccacagaggccacaggcatcagatcccctggagccggagtta
cagagggtagtgagctgcctgatgtgggtgctggggatctgcacttgggt
catctgcaggagcagtaagtgctcctgactgataagccatctctccaacc
ccattttttcttccttgatgtgtaatttatacaaaattatgaatccatat
attagatcttccatggagagtagtggaggtggtccaagagccattcgagg
cccagacgttttggaagcgcagtctctgttgtctccagtgctctggctgc
tgcttcagtgtgatgcagacagagctgagggaacggtgtgtggacacagt
gtgtggacaaacctatcgagcactcttgtcagtgcccgggtgccataggc
ctgtcgctcttagtgtcattttctcttttccttctttagctatttcagaa
agcccctgaacatctactttgggtttattctgaaatcaacttcatgtcct
cgttgttgctacctggtcatccttatttttacagtggacacctacatgc
gaattcatttctgaatattgtggtgaggtgagtgttccaggttcagcccg
tgttcttactgggaagatactgacaagaagctctctgactttctgtgggt
taggcttctgtgaattcatctctaaataactcagcccagttttcatgtgg
cctctcaggggatcccacagaactgtttgcaatcctgaaacaaaccactg
tttgtcaagtgttggtatcttgctctctctagccttcaccctggtcagct
ttggtggagagggctagcagagtcttgctctcctgcactgccccttccca
ggtaggacagtgtcagacctcgagcaggcgagacatccacttcttccttg
tttactcctccagctcatctctcaggatgaggctgatcgtcgagggaagg
tctatgataaatacatgtccagcttcctcttcaacctcaacaatggtatg
gcatggccttctgtacctaggtgatcatgtgcaagtcttcacactaagca
gccttggctatgatccaggttccaatcagcactgactcgaccgactctta
aagcagagtgctaagctgagctgggaagcctcctgggctctgcttcattt
ctgagctgtgttaggaatgggaacatgggcacttgcacttgagaaggtac
cctaaccaataggtgggaggagatccaaaattcagagggaggactccagg
ggatgctgtctcatgaggaggcaggctgcactttcacatattctgttact
attctgggcttcacgttcccattagattaaattgtttctgttacctctta
actgatccttaaagtagagctacagattgggggattgaagctaggcacat
ttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_100904220_100905221
seq2: B6Ng01-037B21.b_48_1046

seq1  GAATTCTTTGTGTAACATCTTCCAGTTTTCTGTCCTTGTCACAGATTTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTGTAACATCTTCCAGTTTTCTGTCCTTGTCACAGATTTGG  50

seq1  AACATTGCAACCAACAAGCTGACCTTCCTCAACTCCTTCAAGATGAAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTGCAACCAACAAGCTGACCTTCCTCAACTCCTTCAAGATGAAGAT  100

seq1  GTCTGTTATCCTCGGCATCATCCACATGCTGTTTGGAGTCAGCCTGAGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTTATCCTCGGCATCATCCACATGCTGTTTGGAGTCAGCCTGAGCC  150

seq1  TTTTCAACCATATGTGAGTCCCTCTGTCCCTGTCATCACACATTAGCCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAACCATATGTGAGTCCCTCTGTCCCTGTCATCACACATTAGCCAG  200

seq1  GTGACATCTTTGCCTAAAGGCATCTCCTCTGGAGAGGAATCAGTAAGTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACATCTTTGCCTAAAGGCATCTCCTCTGGAGAGGAATCAGTAAGTCA  250

seq1  GGGCTCCGGTCTATATTGTAGAAGCAATCTCTATTATACAATCCTCATGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCCGGTCTATATTGTAGAAGCAATCTCTATTATACAATCCTCATGG  300

seq1  TCTTAAATGAAGCTTCATATTAGTTCCTGATCTGTTTATAGGTACAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAATGAAGCTTCATATTAGTTCCTGATCTGTTTATAGGTACAAAAA  350

seq1  AAATGATCTTTGAAAAAAAAAAAGATGCAGCAATTTTCCTGTGATTTAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGATCTTTGAAAAAAAAAAAGATGCAGCAATTTTCCTGTGATTTAGT  400

seq1  GAATTCCTATTTTGCACTCTGTGTATGTGGTGGTTGTGTGCACATGTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTATTTTGCACTCTGTGTATGTGGTGGTTGTGTGCACATGTGTG  450

seq1  TTGTGTGCCCACAGAGGCCACAGGCATCAGATCCCCTGGAGCCGGAGTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTGCCCACAGAGGCCACAGGCATCAGATCCCCTGGAGCCGGAGTTA  500

seq1  CAGAGGGTAGTGAGCTGCCTGATGTGGGTGCTGGGGATCTGCACTTGGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGGTAGTGAGCTGCCTGATGTGGGTGCTGGGGATCTGCACTTGGGT  550

seq1  CATCTGCAGGAGCAGTAAGTGCTCCTGACTGATAAGCCATCTCTCCAACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGCAGGAGCAGTAAGTGCTCCTGACTGATAAGCCATCTCTCCAACC  600

seq1  CCATTTTTTCTTCCTTGATGTGTAATTTATACAAAATTATGAATCCATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTTTTCTTCCTTGATGTGTAATTTATACAAAATTATGAATCCATAT  650

seq1  ATTAGATCTTCCATGGAGAGTAGTGGAGGTGGTCCAAGAGCCATTCGAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGATCTTCCATGGAGAGTAGTGGAGGTGGTCCAAGAGCCATTCGAGG  700

seq1  CCCAGACG-TTTGGAAGCGCAGTCTCTGTTGTCTCCAGTGCTCTGGCTGC  749
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGACGTTTTGGAAGCGCAGTCTCTGTTGTCTCCAGTGCTCTGGCTGC  750

seq1  TGCTTCAGTGTGATGCAGACAGAGCTGAGGGAACGGTGTGTGGACACAGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCAGTGTGATGCAGACAGAGCTGAGGGAACGGTGTGTGGACACAGT  800

seq1  GTGTGGACAAACCTATCGAGCACTCTGGTCAGTGCCC-GGTGCCATAGGC  848
      |||||||||||||||||||||||||| |||||||||| ||||||||||||
seq2  GTGTGGACAAACCTATCGAGCACTCTTGTCAGTGCCCGGGTGCCATAGGC  850

seq1  CTGTCGCTCTTAGTGTCA-TTTCTCTTTTCCTTC-TTAGCTATTTCAAGA  896
      |||||||||||||||||| ||||||||||||||| ||||||||||||  |
seq2  CTGTCGCTCTTAGTGTCATTTTCTCTTTTCCTTCTTTAGCTATTTCAGAA  900

seq1  AGCCCCTGAACATCTACTTTGGCTTTATTCCTGAGATCATCTTCATGTCC  946
      |||||||||||||||||||||| |||||| |||| |||| ||||||||||
seq2  AGCCCCTGAACATCTACTTTGGGTTTATT-CTGAAATCAACTTCATGTCC  949

seq1  TCGTTGTTTGGCTACCTGGTCATCCTTATCTTTTACAAGTGGACAGCCTA  996
      ||||||||  ||||||||||||||||||| |||||| |||||||| ||||
seq2  TCGTTGTT--GCTACCTGGTCATCCTTAT-TTTTAC-AGTGGACA-CCTA  994

seq1  CGATGC  1002
      | ||||
seq2  C-ATGC  999

seq1: chr11_101055374_101056226
seq2: B6Ng01-037B21.g_68_921 (reverse)

seq1  AGAAATGTGCCTAGCTTCAATCCCCCATTCTGTAGCTCTACTTT-AGGAT  49
      ||||||||||||||||||||||||||| |||||||||||||||| |||||
seq2  AGAAATGTGCCTAGCTTCAATCCCCCAATCTGTAGCTCTACTTTAAGGAT  50

seq1  CAGTTAAGAGGTAACAGAAACAATTTAATCTAATGGGAACGTGAAGCCCA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTAAGAGGTAACAGAAACAATTTAATCTAATGGGAACGTGAAGCCCA  100

seq1  GAATAGTAACAGAATATGTGAAAGTGCAGCCTGCCTCCTCATGAGACAGC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGTAACAGAATATGTGAAAGTGCAGCCTGCCTCCTCATGAGACAGC  150

seq1  ATCCCCTGGAGTCCTCCCTCTGAATTTTGGATCTCCTCCCACCTATTGGT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCTGGAGTCCTCCCTCTGAATTTTGGATCTCCTCCCACCTATTGGT  200

seq1  TAGGGTACCTTCTCAAGTGCAAGTGCCCATGTTCCCATTCCTAACACAGC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGTACCTTCTCAAGTGCAAGTGCCCATGTTCCCATTCCTAACACAGC  250

seq1  TCAGAAATGAAGCAGAGCCCAGGAGGCTTCCCAGCTCAGCTTAGCACTCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAATGAAGCAGAGCCCAGGAGGCTTCCCAGCTCAGCTTAGCACTCT  300

seq1  GCTTTAAGAGTCGGTCGAGTCAGTGCTGATTGGAACCTGGATCATAGCCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTAAGAGTCGGTCGAGTCAGTGCTGATTGGAACCTGGATCATAGCCA  350

seq1  AGGCTGCTTAGTGTGAAGACTTGCACATGATCACCTAGGTACAGAAGGCC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGCTTAGTGTGAAGACTTGCACATGATCACCTAGGTACAGAAGGCC  400

seq1  ATGCCATACCATTGTTGAGGTTGAAGAGGAAGCTGGACATGTATTTATCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCATACCATTGTTGAGGTTGAAGAGGAAGCTGGACATGTATTTATCA  450

seq1  TAGACCTTCCCTCGACGATCAGCCTCATCCTGAGAGATGAGCTGGAGGAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACCTTCCCTCGACGATCAGCCTCATCCTGAGAGATGAGCTGGAGGAG  500

seq1  TAAACAAGGAAGAAGTGGATGTCTCGCCTGCTCGAGGTCTGACACTGTCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAAGGAAGAAGTGGATGTCTCGCCTGCTCGAGGTCTGACACTGTCC  550

seq1  TACCTGGGAAGGGGCAGTGCAGGAGAGCAAGACTCTGCTAGCCCTCTCCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGGGAAGGGGCAGTGCAGGAGAGCAAGACTCTGCTAGCCCTCTCCA  600

seq1  CCAAAGCTGACCAGGGTGAAGGCTAGAGAGAGCAAGATACCAACACTTGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGCTGACCAGGGTGAAGGCTAGAGAGAGCAAGATACCAACACTTGA  650

seq1  CAAACAGTGGTTTGTTTCAGGATTGCAAACAGTTCTGTGGGATCCCCTGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAGTGGTTTGTTTCAGGATTGCAAACAGTTCTGTGGGATCCCCTGA  700

seq1  GAGGCCACATGAAAACTGGGCTGAGTTATTTAGAGATGAATTCACAGAAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCACATGAAAACTGGGCTGAGTTATTTAGAGATGAATTCACAGAAG  750

seq1  CCTAACCCACAGAAAGTCAGAGAGCTTCTTGTCAGTATCTTCCCAGTAAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACCCACAGAAAGTCAGAGAGCTTCTTGTCAGTATCTTCCCAGTAAG  800

seq1  AACACGGGCTGAACCTGGAACACTCACCTCACCACAATATTCAGAAATGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACGGGCTGAACCTGGAACACTCACCTCACCACAATATTCAGAAATGA  850

seq1  ATTC  853
      ||||
seq2  ATTC  854