BAC Information

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BAC

Clone NameB6Ng01-037H01
Chromosome11 (Build37)
Map Location 62,735,275 - 62,853,058
singlet/doubletdoublet
Overlap geneCdrt4
Upstream geneAkap10, D630015H07, LOC626325, LOC100041558, Specc1, Adora2b, 2410012H22Rik, Ttc19, Ncor1, Pigl, Prr6, Ubb, Trpv2, 2410006H16Rik, BC046404, BC025076, Zfp287, LOC626482, LOC100042766, Zfp286, Trim16, Fbxw10, Fam18b
Downstream geneTekt3, Pmp22, LOC433423, LOC100042799, LOC100041690, LOC654442, LOC668297, Hs3st3b1, Cox10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-037H01.bB6Ng01-037H01.g
ACCDH865299DH865300
length1,144856
definitionDH865299|Mus musculus domesticus DNA, BAC clone: B6Ng01-037H01, 5' end.DH865300|Mus musculus domesticus DNA, BAC clone: B6Ng01-037H01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,851,916 - 62,853,058)(62,735,275 - 62,736,128)
sequence
gaattctatcccatcttccgacatcgtatgacatcagatggtgaaagcct
ggagccccagagatgtatctgaccttgtctacctataagccatcagatga
gcacagctctgtgttttgctttcctttgccttgtgagggacatgatgaca
atacctccctcatggggctttggaagcattaatgacagaagatgtgacct
gttcagaataagcagtccctggcacttagtaaatgtaccaagttcaattc
taccaagggccacaggtgagcaaccccagttgcacagactctgagaggat
tttccagccaggaggatttgttcggatgctctcagcactcacagggggac
catgagaaggtggtggccagaagaacgggcttattatatgttttagtgtt
ggttaatacatgccttcattgctaagcacttgtggacagagtggagcata
tgagtaggcaacactccagtcttgtttttttccttcttccaagaagacat
catttgttctttgagtctgtggaacaccttgaagtgactatgaaaaatga
gcccctgaaagagtggatgtgccctggatggaagttgccccacgaaggca
gaacaggttcaaggcctgagacttttggatctttatctgcatgagagagg
agggtaattaaactcacagtgatgtctccttacaaatctagaaatagtag
aattgtgaagtttcatttccttgtgaaaattaaccacctgttgcaaagcc
agactccagccaactaccataaaaatgagcaaaccagtgcctttgaatgt
tgaactgaaaaggctgtgcgttgtccagcctcgaacagtagaaacaaccg
tcataaaatgatataacaaaatacagtgagacacatgttagtccttggca
gggaattcactttctgcccagcacagcgtgtcttttgtgagtgaatccag
tgattcattagccactggactttgacttatagctttcattttttatgaag
tttaaactatcattattatagtaggagaacaggtgtgggtttcatgccta
ccgtggaaatcaccgctctgctcgcccataccttaccaaatgtgattcag
atgctgtcatcctcttcaccgacattcatcacagagctggtctt
gaattccagggaccgatcggccttctctgccactaaccctcactcctcca
acttccaattcaatttccttttctcctgggccttgacggaaatagttttt
aatggttgctcaaccgtgccacctagtgcttagcagattctgtgtgaaga
gcaagcaaaagacagtggggacataccatctgggaaggaggcagctagct
gactgtcagtggggaccagtcttgggtttgcagaccggttcttcttttta
ctcctgataccaaaggacaaagacacccattccgctaagctgggagagag
ctgggccgggttgtgtctgtccactgggaggccatgccgaggtactgaag
agaccgtgcagagagctaccagacagaactaccaggctgggctaagctgc
ctctgggtgtcctttgtccttcacgggagcaggtgttgggagtctgattc
ttggtaagcggtattgggaggtgatgtggaaactttaggttctacctagt
gagaaggctgccaccgtgtggtttgtccaccagtaccatagcacccacca
ggaagcctatactagatgctaccatcttgtcattgaacttgtgaaacctt
gaactaaagaaatcttttttccataataaggtatgcaatcatgggtgttt
tcgttttagccacggacaattaactactagtacaaaccaccctgtcagac
tgtctatatttccatgaattttatcaaggacatgggccaccaggaatggt
gctttcacattcaacagctaccagcaaggtcttagaatcctcctggcagg
cttgctgattgacacagctgagcccccagcctaacttggagcccactgcc
atcttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_62851916_62853058
seq2: B6Ng01-037H01.b_46_1189 (reverse)

seq1  AAGA-CAGCTCTGGTGATG-ATGTCGGTGATGAGGATGACAGCATTCTGA  48
      |||| ||||||| |||||| |||||||||| ||||||||||||| |||||
seq2  AAGACCAGCTCT-GTGATGAATGTCGGTGAAGAGGATGACAGCA-TCTGA  48

seq1  ATCACATTGGGTAGGGTATGGGCGAGCAGAGCGGTGATTTCCACTGTAGG  98
      |||||||| |||| |||||||||||||||||||||||||||||| |||||
seq2  ATCACATTTGGTAAGGTATGGGCGAGCAGAGCGGTGATTTCCACGGTAGG  98

seq1  CATGAAACCCACACCTG-TCTCCTACCTTATAATAATGATAGTTTAAACT  147
      ||||||||||||||||| ||||||||  ||||||||||||||||||||||
seq2  CATGAAACCCACACCTGTTCTCCTAC--TATAATAATGATAGTTTAAACT  146

seq1  TCAT-AAAAATG-AAGCTATAAGTCAAAGTCCAGTGGCT-ATGAATCACT  194
      |||| ||||||| |||||||||||||||||||||||||| ||||||||||
seq2  TCATAAAAAATGAAAGCTATAAGTCAAAGTCCAGTGGCTAATGAATCACT  196

seq1  GGATTCACTCACAAAAAGACACGCTGTGCTGGGCAGAAAGTGAATTCCCT  244
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GGATTCACTCAC-AAAAGACACGCTGTGCTGGGCAGAAAGTGAATTCCCT  245

seq1  GCCAAGGACTTACATGTGTCTCACTGTATTTTGTTATATCATTTTATGAC  294
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGGACTAACATGTGTCTCACTGTATTTTGTTATATCATTTTATGAC  295

seq1  GGTTGTTTCTACTGTTCGAGGCTGGACAACGCACAGCCTTTTCAGTTCAA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTTTCTACTGTTCGAGGCTGGACAACGCACAGCCTTTTCAGTTCAA  345

seq1  CATTCAAAGGCACTGGTTTGCTCATTTTTATGGTAGTTGGCTGGAGTCTG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAAAGGCACTGGTTTGCTCATTTTTATGGTAGTTGGCTGGAGTCTG  395

seq1  GCTTTGCAACAGGTGGTTAATTTTCACAAGGAAATGAAACTTCACAATTC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGCAACAGGTGGTTAATTTTCACAAGGAAATGAAACTTCACAATTC  445

seq1  TACTATTTCTAGATTTGTAAGGAGACATCACTGTGAGTTTAATTACCCTC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATTTCTAGATTTGTAAGGAGACATCACTGTGAGTTTAATTACCCTC  495

seq1  CTCTCTCATGCAGATAAAGATCCAAAAGTCTCAGGCCTTGAACCTGTTCT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCATGCAGATAAAGATCCAAAAGTCTCAGGCCTTGAACCTGTTCT  545

seq1  GCCTTCGTGGGGCAACTTCCATCCAGGGCACATCCACTCTTTCAGGGGCT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCGTGGGGCAACTTCCATCCAGGGCACATCCACTCTTTCAGGGGCT  595

seq1  CATTTTTCATAGTCACTTCAAGGTGTTCCACAGACTCAAAGAACAAATGA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTCATAGTCACTTCAAGGTGTTCCACAGACTCAAAGAACAAATGA  645

seq1  TGTCTTCTTGGAAGAAGGAAAAAAACAAGACTGGAGTGTTGCCTACTCAT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCTTGGAAGAAGGAAAAAAACAAGACTGGAGTGTTGCCTACTCAT  695

seq1  ATGCTCCACTCTGTCCACAAGTGCTTAGCAATGAAGGCATGTATTAACCA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCCACTCTGTCCACAAGTGCTTAGCAATGAAGGCATGTATTAACCA  745

seq1  ACACTAAAACATATAATAAGCCCGTTCTTCTGGCCACCACCTTCTCATGG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTAAAACATATAATAAGCCCGTTCTTCTGGCCACCACCTTCTCATGG  795

seq1  TCCCCCTGTGAGTGCTGAGAGCATCCGAACAAATCCTCCTGGCTGGAAAA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCTGTGAGTGCTGAGAGCATCCGAACAAATCCTCCTGGCTGGAAAA  845

seq1  TCCTCTCAGAGTCTGTGCAACTGGGGTTGCTCACCTGTGGCCCTTGGTAG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTCAGAGTCTGTGCAACTGGGGTTGCTCACCTGTGGCCCTTGGTAG  895

seq1  AATTGAACTTGGTACATTTACTAAGTGCCAGGGACTGCTTATTCTGAACA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAACTTGGTACATTTACTAAGTGCCAGGGACTGCTTATTCTGAACA  945

seq1  GGTCACATCTTCTGTCATTAATGCTTCCAAAGCCCCATGAGGGAGGTATT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACATCTTCTGTCATTAATGCTTCCAAAGCCCCATGAGGGAGGTATT  995

seq1  GTCATCATGTCCCTCACAAGGCAAAGGAAAGCAAAACACAGAGCTGTGCT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCATGTCCCTCACAAGGCAAAGGAAAGCAAAACACAGAGCTGTGCT  1045

seq1  CATCTGATGGCTTATAGGTAGACAAGGTCAGATACATCTCTGGGGCTCCA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGATGGCTTATAGGTAGACAAGGTCAGATACATCTCTGGGGCTCCA  1095

seq1  GGCTTTCACCATCTGATGTCATACGATGTCGGAAGATGGGATAGAATTC  1143
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTCACCATCTGATGTCATACGATGTCGGAAGATGGGATAGAATTC  1144

seq1: chr11_62735275_62736128
seq2: B6Ng01-037H01.g_67_922

seq1  GAATTCCAGGGACCGATCGGCCTTCTCTGCCACTAACCCTCACTCCTCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGGACCGATCGGCCTTCTCTGCCACTAACCCTCACTCCTCCA  50

seq1  ACTTCCAATTCAATTTCCTTTTCTCCTGGGCCTTGACGGAAATAGTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCAATTCAATTTCCTTTTCTCCTGGGCCTTGACGGAAATAGTTTTT  100

seq1  AATGGTTGCTCAACCGTGCCACCTAGTGCTTAGCAGATTCTGTGTGAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTTGCTCAACCGTGCCACCTAGTGCTTAGCAGATTCTGTGTGAAGA  150

seq1  GCAAGCAAAAGACAGTGGGGACATACCATCTGGGAAGGAGGCAGCTAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCAAAAGACAGTGGGGACATACCATCTGGGAAGGAGGCAGCTAGCT  200

seq1  GACTGTCAGTGGGGACCAGTCTTGGGTTTGCAGACCGGTTCTTCTTTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTCAGTGGGGACCAGTCTTGGGTTTGCAGACCGGTTCTTCTTTTTA  250

seq1  CTCCTGATACCAAAGGACAAAGACACCCATTCCGCTAAGCTGGGAGAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGATACCAAAGGACAAAGACACCCATTCCGCTAAGCTGGGAGAGAG  300

seq1  CTGGGCCGGGTTGTGTCTGTCCACTGGGAGGCCATGCCGAGGTACTGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCCGGGTTGTGTCTGTCCACTGGGAGGCCATGCCGAGGTACTGAAG  350

seq1  AGACCGTGCAGAGAGCTACCAGACAGAACTACCAGGCTGGGCTAAGCTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCGTGCAGAGAGCTACCAGACAGAACTACCAGGCTGGGCTAAGCTGC  400

seq1  CTCTGGGTGTCCTTTGTCCTTCACGGGAGCAGGTGTTGGGAGTCTGATTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGGTGTCCTTTGTCCTTCACGGGAGCAGGTGTTGGGAGTCTGATTC  450

seq1  TTGGTAAGCGGTATTGGGAGGTGATGTGGAAACTTTAGGTTCTACCTAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTAAGCGGTATTGGGAGGTGATGTGGAAACTTTAGGTTCTACCTAGT  500

seq1  GAGAAGGCTGCCACCGTGTGGTTTGTCCACCAGTACCATAGCACCCACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGGCTGCCACCGTGTGGTTTGTCCACCAGTACCATAGCACCCACCA  550

seq1  GGAAGCCTATACTAGATGCTACCATCTTGTCATTGAACTTGTGAAACCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCCTATACTAGATGCTACCATCTTGTCATTGAACTTGTGAAACCTT  600

seq1  GAACTAAAGAAATC-TTTTTCCATAATAAGGTATGCAATCATGGGTG-TT  648
      |||||||||||||| |||||||||||||||||||||||||||||||| ||
seq2  GAACTAAAGAAATCTTTTTTCCATAATAAGGTATGCAATCATGGGTGTTT  650

seq1  TCGTTTTAGCCACGGACAATTAACTACTAGTAC-AACCACCCTGTCAGAC  697
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TCGTTTTAGCCACGGACAATTAACTACTAGTACAAACCACCCTGTCAGAC  700

seq1  TGTCTA-ATTTCCATGAATTTAATCAAGGACATGGGCCACCAGGAATGGT  746
      |||||| |||||||||||||| ||||||||||||||||||||||||||||
seq2  TGTCTATATTTCCATGAATTTTATCAAGGACATGGGCCACCAGGAATGGT  750

seq1  GCTTTCACATACAACAGCTACCAGCAGGGTCTTAGAATCCTCCTGGCAGG  796
      |||||||||| ||||||||||||||| ||||||||||||||||||||| |
seq2  GCTTTCACATTCAACAGCTACCAGCAAGGTCTTAGAATCCTCCTGGCA-G  799

seq1  GCTTGCTGAGTGACACAGCTGAGCCCCCAGCCTAACCTTGGAGCCCACTG  846
      ||||||||| ||||||||||||||||||||||||| ||||||||||||||
seq2  GCTTGCTGATTGACACAGCTGAGCCCCCAGCCTAA-CTTGGAGCCCACTG  848

seq1  CCATCTTC  854
      ||||||||
seq2  CCATCTTC  856