BAC Information

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BAC

Clone NameB6Ng01-037M08
Chromosome11 (Build37)
Map Location 102,055,637 - 102,214,160
singlet/doubletdoublet
Overlap geneHdac5, BC030867, Asb16, 2010008E23Rik, Ubtf, Slc4a1
Upstream geneEzh1, Ramp2, Vps25, Wnk4, Ccdc56, Cntd1, Becn1, Psme3, Aoc2, Aoc3, LOC629949, G6pc, Aarsd1, 1700113I22Rik, Rundc1, Rpl27, Ifi35, Vat1, Rnd2, Brca1, Nbr1, Tmem106a, LOC667306, Rdm1, Arl4d, LOC100038842, Dhx8, Etv4, Meox1, LOC194960, Sost, Dusp3, 1700006E09Rik, Mpp3, Cd300lg, Mpp2, Ppy, Pyy, LOC100040687, LOC666411, Nags, Tmem101, Lsm12, G6pc3
Downstream geneRap2ip, Slc25a39, Grn, BC025575, Itga2b, Mdk-ps1, LOC100040792, Fzd2, 2810433D01Rik, Psmb5-ps, Gm1564, LOC100042456, Ccdc43, Adam11, Gja7, Higd1b, Eftud2, Ccdc103, LOC100042500, Gfap, 3000004C01Rik, C1ql1, Dcakd, Nmt1, Plcd3, Acbd4, Hexim1, Hexim2, Fmnl1, 4933400C05Rik, Map3k14, Arhgap27
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-037M08.bB6Ng01-037M08.g
ACCDH865533DH865534
length497486
definitionDH865533|Mus musculus domesticus DNA, BAC clone: B6Ng01-037M08, 5' end.DH865534|Mus musculus domesticus DNA, BAC clone: B6Ng01-037M08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,213,667 - 102,214,160)(102,055,637 - 102,056,127)
sequence
gaattcttcttacatgccagagggagggggtttttgaactcaaagggaaa
tgggagctgaaagcacaaagagacctttggggaccgatgtgggcaaagaa
agaggagcccactgggagggcccagctcacctgacttccctcccctccct
accccaggctgattgtcagtaaaccataacggaagatgatcaagggctct
ggcttccacctggacctgttgctggtctttggcatgggtggggtggctgc
cctctttgggatgccttggctcattgcctccactgtaagatctgttaccc
acgccaatgccctcactgtcttgggtaaggccattggtcctggggctgca
tcccagatccaagatgtctatgaacagcttatctgtgggctcctggtctc
tgtgcttgtgggtaagtgtggccagtcatgcccctatgtcctgctccact
catttcttccccttgtttttgggatgaggtgtggggttggctcttcc
tgttttcaagagtgaagaaaaggcagcattttggctaggaaaggagtgag
aacttttactcccatttgcgagcccacagatcagacattattcccagaaa
gcactgccacaaataagtttatttacacgaagacaaaaaccatgtgttgg
gatacaaactactgaactaaaatccatgtccagggagacaaagcaggagt
gggttggcacaggataagatcagcctacggggagagagtgggaggtgagc
agcctctggttcagtgcaaggatgatacagacagcacgcaaacacacaga
aaactaatagtggtgggactccccagctccctcagccctgctcaggcccc
atacggacaatatggaaacagatagctgatccctggggatgtggtatagg
ggaagaaaaattggccccttaggagccatttcccatctttggtttcctac
aggctagaccacattcactggaagtctgtgggctcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_102213667_102214160
seq2: B6Ng01-037M08.b_39_535 (reverse)

seq1  GGAAGAGCCACCCCCACACCTCATCCCAAGAACAAGGGGCAGAAATGAGT  50
      |||||||||| |||||||||||||||||| ||||||||| ||||||||||
seq2  GGAAGAGCCAACCCCACACCTCATCCCAAAAACAAGGGGAAGAAATGAGT  50

seq1  GGAGCAGGACATAGGGGCATGACTGGCCCCACTTACCCACAAGCACAGAG  100
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GGAGCAGGACATAGGGGCATGACTGGCCACACTTACCCACAAGCACAGAG  100

seq1  ACCAGGAGCCCACTGATCCGCTGTTCCTTGACCTCTTGGATCTGGGCTGC  150
      ||||||||||||| |||  ||||||| | ||| ||||||||||||| |||
seq2  ACCAGGAGCCCACAGATAAGCTGTTCATAGACATCTTGGATCTGGGATGC  150

seq1  AGCCCCTGGACCACTGGCCTTCCCCATGACTGTGAGGGCATTGGCGTGGG  200
      |||||| |||||| ||||||| |||| ||| |||||||||||||||||||
seq2  AGCCCCAGGACCAATGGCCTTACCCAAGACAGTGAGGGCATTGGCGTGGG  200

seq1  TAACAGATCTTACAGTGGTGGCACTGAGCCAAGGCATCCCAAAGAGGGCA  250
      |||||||||||||||||| |||| ||||||||||||||||||||||||||
seq2  TAACAGATCTTACAGTGGAGGCAATGAGCCAAGGCATCCCAAAGAGGGCA  250

seq1  GCCACCCCACCCATGCCAACGACCAGCAACAGGTCCAGGTGGAAGCCAGA  300
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GCCACCCCACCCATGCCAAAGACCAGCAACAGGTCCAGGTGGAAGCCAGA  300

seq1  GCCCTTGATCATCTTCCGTTCTGGTTTACTGACAATCAGCCTGGGGTAGG  350
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GCCCTTGATCATCTTCCGTTATGGTTTACTGACAATCAGCCTGGGGTAGG  350

seq1  GAGGGGAGGGAAGTCAGGTGAGCTGGGCCCTCCCAGTGGGCTCCTCTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGAGGGAAGTCAGGTGAGCTGGGCCCTCCCAGTGGGCTCCTCTTTC  400

seq1  TTTGCCCACATCGGTCCCCCTGGGTCTCTTTGTGCTTTCTGCTCCCATTT  450
      |||||||||||||||||||   ||||||||||||||||| ||||||||||
seq2  TTTGCCCACATCGGTCCCCAAAGGTCTCTTTGTGCTTTCAGCTCCCATTT  450

seq1  CCCTTTGAGTTC-CTGGCCCCCTCCCTCTGGC-TGTTTG-AGAATTC  494
      ||||||||||||     ||||||||||||||| |||  | |||||||
seq2  CCCTTTGAGTTCAAAAACCCCCTCCCTCTGGCATGTAAGAAGAATTC  497

seq1: chr11_102055637_102056127
seq2: B6Ng01-037M08.g_73_564

seq1  GAATTCTG-GGCCAAGAGTGAAGAAAAGGCAGCATTTTGGCTAGGAAAGG  49
      ||||||||    ||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTTTCAAGAGTGAAGAAAAGGCAGCATTTTGGCTAGGAAAGG  50

seq1  AGTGAGAACTTTTACTCCCATTTGCGAGCCCACAGATCAGACATTATTCC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGAACTTTTACTCCCATTTGCGAGCCCACAGATCAGACATTATTCC  100

seq1  CAGAAAGCACTGCCACAAATAAGTTTATTTACACGAAGACAAAAACCATG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGCACTGCCACAAATAAGTTTATTTACACGAAGACAAAAACCATG  150

seq1  TGTTGGGATACAAACTACTGAACTAAAATCCATGTCCAGGGAGACAAAGC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGGATACAAACTACTGAACTAAAATCCATGTCCAGGGAGACAAAGC  200

seq1  AGGAGTGGGTTGGCACAGGATAAGATCAGCCTACGGGGAGAGAGTGGGAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTGGGTTGGCACAGGATAAGATCAGCCTACGGGGAGAGAGTGGGAG  250

seq1  GTGAGCAGCCTCTGGTTCAGTGCAAGGATGATACAGACAGCACGCAAACA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCAGCCTCTGGTTCAGTGCAAGGATGATACAGACAGCACGCAAACA  300

seq1  CACAGAAAACTAATAGTGGTGGGACTCCCCAGCTCCCTCAGCCCTGCTCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAAAACTAATAGTGGTGGGACTCCCCAGCTCCCTCAGCCCTGCTCA  350

seq1  GGCCCCATACGGACAATATGGAAACAGATAGCTGAGCCCTGGGGATGTGG  399
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GGCCCCATACGGACAATATGGAAACAGATAGCTGATCCCTGGGGATGTGG  400

seq1  TATAGGGGAAGAAAAATTGGCCCCTTAGGAGCCATTTCCCATCTTTGGTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGGGAAGAAAAATTGGCCCCTTAGGAGCCATTTCCCATCTTTGGTT  450

seq1  TCCTACAGGCTAGACCACATTCACTGGAAGTCTGTGGGCTCC  491
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACAGGCTAGACCACATTCACTGGAAGTCTGTGGGCTCC  492