BAC Information

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BAC

Clone NameB6Ng01-038I19
Chromosome11 (Build37)
Map Location 47,894,017 - 47,993,323
singlet/doubletdoublet
Overlap genenone
Upstream geneSgcd, LOC628753, LOC100039647
Downstream geneLOC192895, Hn1l-ps2, LOC667163, LOC432554, Gnb2l1, Trim41, LOC100039945, Trim7, Irgm, EG432555, OTTMUSG00000005523, Psme2b-ps, LOC667214, Tgtp, LOC667219, 9930111J21Rik, Olfr56, LOC100039796, Ifi47, Olfr1396, Olfr1395, Olfr1394, Btnl9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-038I19.bB6Ng01-038I19.g
ACCDH866080DH866081
length1731,040
definitionDH866080|Mus musculus domesticus DNA, BAC clone: B6Ng01-038I19, 5' end.DH866081|Mus musculus domesticus DNA, BAC clone: B6Ng01-038I19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,993,152 - 47,993,323)(47,894,017 - 47,895,060)
sequence
aagttaacaggctccacagcaacgtacctgtaccagcttagccatcttgc
agaccccagtatccaagctcttttgagtttttacaagaatatgatgcacc
actaactgcagtttgcatgctataacatagcactttgggtttggtctttc
cttccttccttccttccttcctt
gaattcaactcccggaaaccacaaaacaaagctaggtaaattctatatat
gcttgaaatcccagttgggaaggcagaggcagatatatccttggggtgtg
atgatcttcaggctagcctgcttggaaaaatttcacaccaaaggaaacaa
agtagatatcccctaagaataatagtgaaagctgtccccttacatctaca
tgtacatatcccccttatacaaatgaacatctatacacacatgagtgcac
acacatgtacctacccccatgtacatctctgtgcataaatacaggcacat
tcatttggtcaaagatccaaagatgggggggggagttaatatttccaact
tctttttaatgaaatggattcatggcaatactgggttcctatcattttta
gcccaccatcagcaggacttgagtagcagttttgctttagatggaatggc
cagatggtcaaggtccccacacctctgttgtttctcatacactgaagtca
gtgtcagtttctcagcttctgtgtatcaaatggctgctgcttttatatta
gaggaaaaggaaaaaggaaatcgaacatttcctacctatgtgtatatgaa
aagcgtatggaacaaggggaggggaaggaggactaggtgagtcttgatta
ctttttaacttactttgctggtgcctgagaatagctgggtctgtcactgc
caccttcaaattcaccccttttcaggaagcccatcctctttcaagttcct
accatttgcagtgttctttaacagaaggttctgtgagatctcagtgcatc
tggtaatgtatgtgggacatttcaatgatctttgcatagatcattctatc
atctgtagctttaaaggtgagatatagcattggcccctgattgcagtaag
caccctgctccttgtctttgggaacaccctcccattcacaccagaataac
agtctccgtcgatctgtctcacctgagagctggagcaagggatggaaagt
ctctaccaagaagaacttgcacacttaagaagaacgagtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_47993152_47993323
seq2: B6Ng01-038I19.b_50_222 (reverse)

seq1  AAGGAAGGAAGGAAGGAAGGAAGGAAAGACCAAACCCAAAGTGCTATGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGGAAGGAAGGAAGGAAGGAAAGACCAAACCCAAAGTGCTATGTT  50

seq1  ATAGCATGCAAACTGCAGTTAGTGGTGCATCATATTCTTGTAAAAACTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCATGCAAACTGCAGTTAGTGGTGCATCATATTCTTGTAAAAACTCA  100

seq1  AAAGAGCTTGGATACTGGGGTCTGCAAGATGGCTAAGCTGGTACAGGTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGCTTGGATACTGGGGTCTGCAAGATGGCTAAGCTGGTACAGGTAC  150

seq1  -TTGCTGTGGAGCCTGTTAACTT  172
       ||||||||||||||||||||||
seq2  GTTGCTGTGGAGCCTGTTAACTT  173

seq1: chr11_47894017_47895060
seq2: B6Ng01-038I19.g_68_1107

seq1  GAATTCAACTCCCGGAAACCACAAAACAAAGCTAGGTAAATTCTATATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACTCCCGGAAACCACAAAACAAAGCTAGGTAAATTCTATATAT  50

seq1  GCTTGAAATCCCAGTTGGGAAGGCAGAGGCAGATATATCCTTGGGGTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGAAATCCCAGTTGGGAAGGCAGAGGCAGATATATCCTTGGGGTGTG  100

seq1  ATGATCTTCAGGCTAGCCTGCTTGGAAAAATTTCACACCAAAGGAAACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCTTCAGGCTAGCCTGCTTGGAAAAATTTCACACCAAAGGAAACAA  150

seq1  AGTAGATATCCCCTAAGAATAATAGTGAAAGCTGTCCCCTTACATCTACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGATATCCCCTAAGAATAATAGTGAAAGCTGTCCCCTTACATCTACA  200

seq1  TGTACATATCCCCCTTATACAAATGAACATCTATACACACATGAGTGCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACATATCCCCCTTATACAAATGAACATCTATACACACATGAGTGCAC  250

seq1  ACACATGTACCTACCCCCATGTACATCTCTGTGCATAAATACAGGCACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATGTACCTACCCCCATGTACATCTCTGTGCATAAATACAGGCACAT  300

seq1  TCATTTGGTCAAAGATCCAAAGATGGGGGGGGGAGTTAATATTTCCAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTGGTCAAAGATCCAAAGATGGGGGGGGGAGTTAATATTTCCAACT  350

seq1  TCTTTTTAATGAAATGGATTCATGGCAATACTGGGTTCCTATCATTTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTAATGAAATGGATTCATGGCAATACTGGGTTCCTATCATTTTTA  400

seq1  GCCCACCATCAGCAGGACTTGAGTAGCAGTTTTGCTTTAGATGGAATGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACCATCAGCAGGACTTGAGTAGCAGTTTTGCTTTAGATGGAATGGC  450

seq1  CAGATGGTCAAGGTCCCCACACCTCTGTTGTTTCTCATACACTGAAGTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGGTCAAGGTCCCCACACCTCTGTTGTTTCTCATACACTGAAGTCA  500

seq1  GTGTCAGTTTCTCAGCTTCTGTGTATCAAATGGCTGCTGCTTTTATATTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCAGTTTCTCAGCTTCTGTGTATCAAATGGCTGCTGCTTTTATATTA  550

seq1  GAGGAAAAGGAAAAAGGAAATCGAACATTTCCTACCTATGTGTATATGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAAAGGAAAAAGGAAATCGAACATTTCCTACCTATGTGTATATGAA  600

seq1  AAGCGTATGGAACAAGGGGAGGGGAAGGAGGACTAGGTGAGTCTTGATTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCGTATGGAACAAGGGGAGGGGAAGGAGGACTAGGTGAGTCTTGATTA  650

seq1  C-TTTTAACTTAC-TTGCTGGTGCCTGAGAATAGCTGGGTCTGTCACTGC  698
      | ||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CTTTTTAACTTACTTTGCTGGTGCCTGAGAATAGCTGGGTCTGTCACTGC  700

seq1  CACCTTCAAATTCACCCC-TTTCAGGAAGCCCATCCTCTTTCAAGTTCCT  747
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CACCTTCAAATTCACCCCTTTTCAGGAAGCCCATCCTCTTTCAAGTTCCT  750

seq1  ACCATTTGCAGTGTTCTTTAACAGAAGGTTCTGTGAGATCTCAGTGCATC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTTGCAGTGTTCTTTAACAGAAGGTTCTGTGAGATCTCAGTGCATC  800

seq1  TGGTAATGTATGTGGGACATTTCAATGATCTTTGCATAGATCATTCTATC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAATGTATGTGGGACATTTCAATGATCTTTGCATAGATCATTCTATC  850

seq1  ATCTGTAGCTTTAAAGGTGAGATATAGCATT-GCCCCTGATTGCAGTAAG  896
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ATCTGTAGCTTTAAAGGTGAGATATAGCATTGGCCCCTGATTGCAGTAAG  900

seq1  CACCCTGCTCCTTGTCTTTGGGAACACCCTCCCAATTCACCACCAAGAAT  946
      ||||||||||||||||||||||||||||||||| ||||| |||| |||||
seq2  CACCCTGCTCCTTGTCTTTGGGAACACCCTCCC-ATTCA-CACC-AGAAT  947

seq1  AACAGTCTCCTCAGAACTGTTCTCACCTGAGAGCTGGAGCAAAGGGATGG  996
      ||||||||||   || ||| |||||||||||||||||||| |||||||||
seq2  AACAGTCTCCGTCGATCTG-TCTCACCTGAGAGCTGGAGC-AAGGGATGG  995

seq1  AGAGTTCTC-ACCATGAAGAACTTGCACACCTCAAAGTAAGAACGAGTT  1044
      | || |||| |||| ||||||||||||||| |  ||| |||||||||||
seq2  AAAG-TCTCTACCAAGAAGAACTTGCACACTT--AAG-AAGAACGAGTT  1040