BAC Information

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BAC

Clone NameB6Ng01-039F10
Chromosome11 (Build37)
Map Location 78,883,282 - 79,008,541
singlet/doubletdoublet
Overlap geneKsr1
Upstream geneEral1, BC017647, LOC100043525, Traf4, Nek8, Tlcd1, Rpl23a, Rab34, 4933404M19Rik, Supt6h, Sdf2, 2610507B11Rik, BC030499, LOC100043544, LOC100042648, Spag5, Aldoc, Pigs, Unc119, Foxn1, OTTMUSG00000000132, Slc13a2, Slc46a1, A830091I15Rik, Vtn, Og9x, AI316787, Poldip2, Tnfaip1, Ift20, Tmem97, Nlk, LOC100043570, LOC100042674, 1810009O10Rik, 1810012P15Rik, Nos2, Lgals9
Downstream geneLOC100042697, Wsb1, Nf1, Omg, Evi2b, Evi2a, Rab11fip4, OTTMUSG00000000185, LOC432584, Utp6, ENSMUSG00000072631, Suz12, Crlf3, Atad5, 1110002N22Rik, Centa2, Rnf135
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039F10.bB6Ng01-039F10.g
ACCDH866635DH866636
length8981,110
definitionDH866635|Mus musculus domesticus DNA, BAC clone: B6Ng01-039F10, 5' end.DH866636|Mus musculus domesticus DNA, BAC clone: B6Ng01-039F10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,883,282 - 78,884,190)(79,007,433 - 79,008,541)
sequence
gaattctctcactattgtgctctaaaagaatgaggtggattttctggatt
tacacaaaggcgagaataagactgacatcatgcagaattcatactgcacg
atcccattatagcaaacaaaaggcaggaagggaacacgcgggagctgtca
agtgtccatgagtgcaggaagggaacacgcgggagctgtcaagtgtcaat
gagtgcagcgtgcatggagaagcctggccagggtacctggcaactgcaaa
caaggtgcttatctcagagcacaggcacagggaggcctccactcactccc
tccataaacaacccctgccactgcatggggtggaatgcacttggaaggca
ctctgtgtctctcagcatccatgggcctctaatttgtgccctgatcactt
cctgcgtgggataagcaacaggagcaaacacaaaaaggtgaaaacacgca
aagctgacacatgaaaagccatgagcgaagaaacctggcttgggcctgtg
aggcgaagatgtgcttgtgggggagggggtcccagctgtgcccacaggac
aaacgcaggacatgtgttccccaggagaccaatgggaaagcgttgagaag
acctttctgaaggacaatgggactgaaatcactggaggaagacatacagc
agaggcacggaccagcctggttgagggcttcagtgacagaggcagcgcgg
ttcctggaagcctcccgaccgcctcataggacacactctacagctctggc
ttctctctgtctctcgaagctgaggagaagctgaaaaaactatctgaatc
ttccgatatggtaacctgaggctcagagggaagaagtggcttgctcttgg
aatcacaggaaagaagattcaagggccttggaacccacagcacctcaa
gaattccttcccagccaggattaaaggcaagcactaccatatctagtcct
gactgtttatttatttaactttgtttttttgagacagggtctctctatgt
gtctctggctgtctaggaacttgctatgtagaccaggctgtcctcgaacc
catagagctctgcctgcctctgtctccagagttctgggactaaaggagtg
tgccaccatgctcagtccttggtagtttacttttaatgctcccagagcag
cttagcaatattccccattgttctctggttcaaagtgccccgtggatttt
gacttcctaagctgaaacactgcagaatattttgtagttttgaatttcca
cttggctacacttgaaacacacacacacacacacacacacacacacacac
acacacacacacacacacttttagcctaccagccagataaccatagagct
ggccttcagacccatgcctaagcaactctcaaattgccttcattcacatg
ggtatgactttcttctctctgtatactgaaagctccagaatatcttaccg
ttcaggtgacagtggcaggctttgatgtatatgacttcccctatgtataa
agttcacccagattcagaatacagttgtagtcattgcctctaatgtctta
tcctgggctgggacatagatcaaagaccactggctctgaaattagaattg
tctgggttcaagtcttacctctgacatctgtgtggcccagggtcagtcac
tttcaatttccacgtgtgtaggataggtgtgatttgaatatgcttggccc
agggaatggcactattaggaggtatggccttgttggaggaggtgtggcct
gttgaggaaatgtgtcactttgagggtggacattgagaccctctctcctc
ctagctgcctggaagccagtcttctgtttgccttttgaacaagatgtagt
atctcagcccctgcgtcatgcctgcctggatgatgccatgctcttcgttc
atgatatggactgaacctccgaacctgttagccagccccaaagaaatgtt
ttgcctttacaggagttgctatggtcatggggtcctcttcatgggccttg
ggaaaacttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_78883282_78884190
seq2: B6Ng01-039F10.b_43_940

seq1  GAATTCTCTCACTATTGTGCTCTAAAAGAATGAGGTGGATTTTCTGGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCACTATTGTGCTCTAAAAGAATGAGGTGGATTTTCTGGATT  50

seq1  TACACAAAGGCGAGAATAAGACTGACATCATGCAGAATTCATACTGCACG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAAAGGCGAGAATAAGACTGACATCATGCAGAATTCATACTGCACG  100

seq1  ATCCCATTATAGCAAACAAAAGGCAGGAAGGGAACACGCGGGAGCTGTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCATTATAGCAAACAAAAGGCAGGAAGGGAACACGCGGGAGCTGTCA  150

seq1  AGTGTCCATGAGTGCAGGAAGGGAACACGCGGGAGCTGTCAAGTGTCAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCCATGAGTGCAGGAAGGGAACACGCGGGAGCTGTCAAGTGTCAAT  200

seq1  GAGTGCAGCGTGCATGGAGAAGCCTGGCCAGGGTACCTGGCAACTGCAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCAGCGTGCATGGAGAAGCCTGGCCAGGGTACCTGGCAACTGCAAA  250

seq1  CAAGGTGCTTATCTCAGAGCACAGGCACAGGGAGGCCTCCACTCACTCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTGCTTATCTCAGAGCACAGGCACAGGGAGGCCTCCACTCACTCCC  300

seq1  TCCATAAACAACCCCTGCCACTGCATGGGGTGGAATGCACTTGGAAGGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATAAACAACCCCTGCCACTGCATGGGGTGGAATGCACTTGGAAGGCA  350

seq1  CTCTGTGTCTCTCAGCATCCATGGGCCTCTAATTTGTGCCCTGATCACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGTCTCTCAGCATCCATGGGCCTCTAATTTGTGCCCTGATCACTT  400

seq1  CCTGCGTGGGATAAGCAACAGGAGCAAACACAAAAAGGTGAAAACACGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCGTGGGATAAGCAACAGGAGCAAACACAAAAAGGTGAAAACACGCA  450

seq1  AAGCTGACACATGAAAAGCCATGAGCGAAGAAACCTGGCTTGGGCCTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGACACATGAAAAGCCATGAGCGAAGAAACCTGGCTTGGGCCTGTG  500

seq1  AGGCGAAGATGTGCTTGTGGGGGAGGGGGTCCCAGCTGTGCCCACAGGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGAAGATGTGCTTGTGGGGGAGGGGGTCCCAGCTGTGCCCACAGGAC  550

seq1  AAACGCAGGACATGTGTTCCCCAGGAGACCAATGGGAAAGCGTTGAGAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGCAGGACATGTGTTCCCCAGGAGACCAATGGGAAAGCGTTGAGAAG  600

seq1  ACCTTTCTGAAGGACAATGGGACTGAAATCACTGGAGGAAGACATACAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTCTGAAGGACAATGGGACTGAAATCACTGGAGGAAGACATACAGC  650

seq1  AGAGGCACGGACCAGCCTGGTTGAGGGCTTCAGTGACAGAGGCAGCGCGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCACGGACCAGCCTGGTTGAGGGCTTCAGTGACAGAGGCAGCGCGG  700

seq1  TTCCTGGAAGCCTCCCGACCGCCTCATAGGACACAACTCTACAGCTCTGG  750
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TTCCTGGAAGCCTCCCGACCGCCTCATAGGACAC-ACTCTACAGCTCTGG  749

seq1  CTTCCCTCTGTCTCTCGAAGCCTGAGGAGAAGGCTGAAAAAAACTATCTG  800
      |||| ||||||||||||||| |||||||||| |||| |||||||||||||
seq2  CTTCTCTCTGTCTCTCGAAG-CTGAGGAGAA-GCTG-AAAAAACTATCTG  796

seq1  AATCTTTCCCGATATGGGTAAACTGAGGCTCAGAGGGAAGAAGTGGTCTG  850
      ||||||  ||||||| ||||| ||||||||||||||||||||||||  ||
seq2  AATCTT--CCGATAT-GGTAACCTGAGGCTCAGAGGGAAGAAGTGGCTTG  843

seq1  CTCTGGGATACACAGGGAGAGAAGATCGAGGGGCCCTTGGGACACGCACA  900
      |||| |||  |||| ||| |||||||  | ||| ||||||   || ||||
seq2  CTCTTGGAATCACA-GGAAAGAAGATTCAAGGG-CCTTGG--AACCCACA  889

seq1  GCACCTCAA  909
      |||||||||
seq2  GCACCTCAA  898

seq1: chr11_79007433_79008541
seq2: B6Ng01-039F10.g_68_1177 (reverse)

seq1  CAGGTTTTCC--ATGGCCATGAAGA-GACACCATGACCATAGCAACTCCT  47
      || |||||||  | | ||||||||| ||| ||||||||||||||||||||
seq2  CAAGTTTTCCCAAGGCCCATGAAGAGGACCCCATGACCATAGCAACTCCT  50

seq1  GTAAAGGC-AAACATTTCATTGGGGCTGGCTTACAGGTTCGGAGGTTCAG  96
      |||||||| ||||||||| |||||||||||| ||||||||||||||||||
seq2  GTAAAGGCAAAACATTTCTTTGGGGCTGGCTAACAGGTTCGGAGGTTCAG  100

seq1  TCCATTATCATGAACGTAGGAGCATGGCATCATCCAGGCAGGCATGACGC  146
      |||| ||||||||||| | |||||||||||||||||||||||||||||||
seq2  TCCA-TATCATGAACG-AAGAGCATGGCATCATCCAGGCAGGCATGACGC  148

seq1  AGGGGCTGAGAATTCTACATCTTGTTCCAAAGGCAAACAGAAGACTGGCT  196
      |||||||||| || ||||||||||||| ||||||||||||||||||||||
seq2  AGGGGCTGAG-ATACTACATCTTGTTCAAAAGGCAAACAGAAGACTGGCT  197

seq1  TCCAGGCAGCTAGGAGGAGAGAGGGTCTCAATGTCCACCCTCAAAGTGAC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGCAGCTAGGAGGAGAGAGGGTCTCAATGTCCACCCTCAAAGTGAC  247

seq1  ACATTTCCTCAACAAGGCCACACCTCCTCCAACAAGGCCATACCTCCTAA  296
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ACATTTCCTCAAC-AGGCCACACCTCCTCCAACAAGGCCATACCTCCTAA  296

seq1  TAGTGCCATTCCCTGGGCCAAGCATATTCAAATCACACCTATCCTACACA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGCCATTCCCTGGGCCAAGCATATTCAAATCACACCTATCCTACACA  346

seq1  CGTGGAAATTG-AAGTGACTGACCCTGGGCCACACAGATGTCAGAGGTAA  395
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CGTGGAAATTGAAAGTGACTGACCCTGGGCCACACAGATGTCAGAGGTAA  396

seq1  GACTTGAACCCAGACAATTCTAATTTCAGAGCCAGTGGTCTTTGATCTAT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGAACCCAGACAATTCTAATTTCAGAGCCAGTGGTCTTTGATCTAT  446

seq1  GTCCCAGCCCAGGATAAGACATTAGAGGCAATGACTACAACTGTATTCTG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCAGCCCAGGATAAGACATTAGAGGCAATGACTACAACTGTATTCTG  496

seq1  AATCTGGGTGAACTTTATACATAGGGGAAGTCATATACATCAAAGCCTGC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGGGTGAACTTTATACATAGGGGAAGTCATATACATCAAAGCCTGC  546

seq1  CACTGTCACCTGAACGGTAAGATATTCTGGAGCTTTCAGTATACAGAGAG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTCACCTGAACGGTAAGATATTCTGGAGCTTTCAGTATACAGAGAG  596

seq1  AAGAAAGTCATACCCATGTGAATGAAGGCAATTTGAGAGTTGCTTAGGCA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGTCATACCCATGTGAATGAAGGCAATTTGAGAGTTGCTTAGGCA  646

seq1  TGGGTCTGAAGGCCAGCTCTATGGTTATCTGGCTGGTAGGCTAAAAGTGT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCTGAAGGCCAGCTCTATGGTTATCTGGCTGGTAGGCTAAAAGTGT  696

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTT  746

seq1  CAAGTGTAGCCAAGTGGAAATTCAAAACTACAAAATATTCTGCAGTGTTT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGTAGCCAAGTGGAAATTCAAAACTACAAAATATTCTGCAGTGTTT  796

seq1  CAGCTTAGGAAGTCAAAATCCACGGGGCACTTTGAACCAGAGAACAATGG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTAGGAAGTCAAAATCCACGGGGCACTTTGAACCAGAGAACAATGG  846

seq1  GGAATATTGCTAAGCTGCTCTGGGAGCATTAAAAGTAAACTACCAAGGAC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATATTGCTAAGCTGCTCTGGGAGCATTAAAAGTAAACTACCAAGGAC  896

seq1  TGAGCATGGTGGCACACTCCTTTAGTCCCAGAACTCTGGAGACAGAGGCA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCATGGTGGCACACTCCTTTAGTCCCAGAACTCTGGAGACAGAGGCA  946

seq1  GGCAGAGCTCTATGGGTTCGAGGACAGCCTGGTCTACATAGCAAGTTCCT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGCTCTATGGGTTCGAGGACAGCCTGGTCTACATAGCAAGTTCCT  996

seq1  AGACAGCCAGAGACACATAGAGAGACCCTGTCTCAAAAAAACAAAGTTAA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGCCAGAGACACATAGAGAGACCCTGTCTCAAAAAAACAAAGTTAA  1046

seq1  ATAAATAAACAGTCAGGACTAGATATGGTAGTGCTTGCCTTTAATCCTGG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAAACAGTCAGGACTAGATATGGTAGTGCTTGCCTTTAATCCTGG  1096

seq1  CTGGGAAGGAATTC  1109
      ||||||||||||||
seq2  CTGGGAAGGAATTC  1110