BAC Information

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BAC

Clone NameB6Ng01-039M16
Chromosome11 (Build37)
Map Location 9,174,681 - 9,320,737
singlet/doubletdoublet
Overlap geneAbca13
Upstream geneLOC665380, Tns3, LOC638720, Pkd1l1, LOC624800, Hus1, Sunc1, OTTMUSG00000005148, Upp1, LOC626887, LOC100041469
Downstream geneLOC665435, LOC382483
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039M16.bB6Ng01-039M16.g
ACCDH866956DH866957
length1,1341,044
definitionDH866956|Mus musculus domesticus DNA, BAC clone: B6Ng01-039M16, 5' end.DH866957|Mus musculus domesticus DNA, BAC clone: B6Ng01-039M16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(9,174,681 - 9,175,826)(9,319,700 - 9,320,737)
sequence
gaattcctcagctacctggagaggtcagcaaaagattttatacctgctgg
gtctgaaggatggagactagaaaaggatgtgttatttcaggggctaaacc
aggtaaaaattatacacaaaccatttcctacaagatattaaaacacccgg
cagcagtattcagctttgccagttgtgagttttgctgatgacataaggag
aatgagcagattttttttttttaatgctggtctttactttaatgtggttg
cttctatttgtagttattgataacattggggagcatctctgagcattcct
aaatgtcccccctttccatccttattaatttttcagctgttgacaaagaa
tgcttctgccctttgcctgaatggacatttgtctcaggaggctgccctcc
ccactgggaactctagcatatggaggagtgtctggggagtgctatgccat
accctattcttcaacgagaccagtgttttaaatgagctgcttcgagcagt
gaaggatgctgtaagtatccatcattagatctctccaacatcaccagctg
gactcctgttaaagggtaagtcacccaacatgctaatactgagcctggaa
tttggaccgtgtaagtgctggcagccctaaaaggatgctgctgcctgggt
ggtggctattcttcagttctattcctcctgactacctgggtgtggtggta
catagtccctgccacaaccttccaggcaatccctgagagtactgcgaact
tccgaatacatacatctgcctcttgggtttcctggtctctcccccactcc
attttctcctagttgcgtatgggaaggaagcacagagtgaactttagtga
tagttaatgtacagcagcttgtagtcatggcctttagtgatgagaggatt
tggaagtcactttcttcccctgtcactgcctagcatcttggcaacatgcc
gaacatcacagactatggaagatttcgaaaaatattctataaaatgtcaa
cttcagcacttatctttcttaccagaattaaacattaatattcttatgtt
taccatgttgttcctctcacaattactgtctctaaaatgcatagaatata
aaatagtgaataataaaacagtaaatagaatgat

gaattcaacctggttgggattaagttgaatgatggctcatctgagggtgg
gaaaggacttcaaagggaaggggtgctcactgcctggtggggttacttta
ccacttgctgcttagcaaactgaggaagaagagaattggggagcgtcatt
tttcctgcttctccttgccaaaactggatgtgctggagtcaggatctgga
gaaactgaatgtggaatttattcagactcatacattcacatttggccaga
ttccacacggttcctttggcaagtcagagaggtaagagaacttggatgct
gatttttacttcccaaattagccaaacccagggcttcttgggaaggggcc
atatacagtgaggggaagtcactactttaaaagcatcaactggacaaaaa
gcagacatccagcctccaaatagaaggttttgaaaaattcatgcattgga
gcaactgatataaaatctctctattattcttactcatatgctgtccacag
tacttccctccctacttagtgtctctgctttcagcttatatctctctaca
ctgaatatcatcatttttatcacatttgcctgccagaggaggaaagggcc
acattctggatattcatatccaaaggctttctgtaattaaagattcatct
tggtgttttttaatttttatttattttgagattataaaacattctaacat
ttcttccttccccttcctccttccaaatcttcctatttactcctccctac
tctccttcaaattcatggcctccttttcattagttgttattgcatacttt
atacctatacctatacctatacctatacctatacctatacctataccttt
accttgttcagaaagtttgttgtaaggttgtatctcctagttacattgat
tgattgactgattgattgatgattgatgattgattgattcaggtctctct
atatagtcctggatatccttaaattgactatgtagacagttgacttatga
aaccctcttctctgcctctacttctggattaagtatccaaattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_9174681_9175826
seq2: B6Ng01-039M16.b_44_1177

seq1  GAATTCCTCAGCTACCTGGAGAGGTCAGCAAAAGATTTTATACCTGCTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCAGCTACCTGGAGAGGTCAGCAAAAGATTTTATACCTGCTGG  50

seq1  GTCTGAAGGATGGAGACTAGAAAAGGATGTGTTATTTCAGGGGCTAAACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGAAGGATGGAGACTAGAAAAGGATGTGTTATTTCAGGGGCTAAACC  100

seq1  AGGTAAAAATTATACACAAACCATTTCCTACAAGATATTAAAACACCCGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAAAAATTATACACAAACCATTTCCTACAAGATATTAAAACACCCGG  150

seq1  CAGCAGTATTCAGCTTTGCCAGTTGTGAGTTTTGCTGATGACATAAGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGTATTCAGCTTTGCCAGTTGTGAGTTTTGCTGATGACATAAGGAG  200

seq1  AATGAGCAGATTTTTTTTTTTTAATGCTGGTCTTTACTTTAATGTGGTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGCAGATTTTTTTTTTTTAATGCTGGTCTTTACTTTAATGTGGTTG  250

seq1  CTTCTATTTGTAGTTATTGATAACATTGGGGAGCATCTCTGAGCATTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTATTTGTAGTTATTGATAACATTGGGGAGCATCTCTGAGCATTCCT  300

seq1  AAATGTCCCCCCTTTCCATCCTTATTAATTTTTCAGCTGTTGACAAAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTCCCCCCTTTCCATCCTTATTAATTTTTCAGCTGTTGACAAAGAA  350

seq1  TGCTTCTGCCCTTTGCCTGAATGGACATTTGTCTCAGGAGGCTGCCCTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCTGCCCTTTGCCTGAATGGACATTTGTCTCAGGAGGCTGCCCTCC  400

seq1  CCACTGGGAACTCTAGCATATGGAGGAGTGTCTGGGGAGTGCTATGCCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGGGAACTCTAGCATATGGAGGAGTGTCTGGGGAGTGCTATGCCAT  450

seq1  ACCCTATTCTTCAACGAGACCAGTGTTTTAAATGAGCTGCTTCGAGCAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTATTCTTCAACGAGACCAGTGTTTTAAATGAGCTGCTTCGAGCAGT  500

seq1  GAAGGATGCTGTAAGTATCCATCATTAGATCTCTCCAACATCACCAGCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGATGCTGTAAGTATCCATCATTAGATCTCTCCAACATCACCAGCTG  550

seq1  GACTCCTGTTAAAGGGTAAGTCACCCAACATGCTAATACTGAGCCTGGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCTGTTAAAGGGTAAGTCACCCAACATGCTAATACTGAGCCTGGAA  600

seq1  TTTGGACCGTGTAAGTGCTGGCAGCCCTAAAAGGATGCTGCTGCCTGGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGACCGTGTAAGTGCTGGCAGCCCTAAAAGGATGCTGCTGCCTGGGT  650

seq1  GGTGGCTATTCTTCAGTTCTATTCCTCCTGACTACCTGGGTGTGGTGGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCTATTCTTCAGTTCTATTCCTCCTGACTACCTGGGTGTGGTGGTA  700

seq1  CATAGTCCCTGCCACAACCTTCCAGGCAATCCCTGAGAGTACTGCGAACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTCCCTGCCACAACCTTCCAGGCAATCCCTGAGAGTACTGCGAACT  750

seq1  TCCGAATACATACATCTGCCTCTTGGGTTTCCTGGTCTCTCCCCCACTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGAATACATACATCTGCCTCTTGGGTTTCCTGGTCTCTCCCCCACTCC  800

seq1  ATTTTCTCCTAGTTGCGTATGGGAAGGAAGCACAGAGTGAACTTTAGTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTCCTAGTTGCGTATGGGAAGGAAGCACAGAGTGAACTTTAGTGA  850

seq1  TAGTTAATGTACAGCAGCTTGTAGTCATGGCCTTTAGTGATGAGAGGATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTAATGTACAGCAGCTTGTAGTCATGGCCTTTAGTGATGAGAGGATT  900

seq1  TGGAAGTCACTTTCTTCCCCTGTCACTGCCTAGCATCTTGGCAACCATGC  950
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TGGAAGTCACTTTCTTCCCCTGTCACTGCCTAGCATCTTGGCAA-CATGC  949

seq1  CGAACATTCACAGACTATGGAAGATTTCGAAAAATATTCTAT-AAATGTC  999
      |||||| ||||||||||||||||||||||||||||||||||| |||||||
seq2  CGAACA-TCACAGACTATGGAAGATTTCGAAAAATATTCTATAAAATGTC  998

seq1  AACTTCAGCACTTATCTTTCTTACCAAGAATTAAACTATAATATTCTTAT  1049
      ||||||||||||||||||||||||| ||||||||||  ||||||||||||
seq2  AACTTCAGCACTTATCTTTCTTACC-AGAATTAAACATTAATATTCTTAT  1047

seq1  GTTTACCATGTTGTTCCTCTCACAATTACCTGTCTCTTAAAAAATGCATT  1099
      |||||||||||||||||||||||||||| ||||||||   |||||||| |
seq2  GTTTACCATGTTGTTCCTCTCACAATTA-CTGTCTCT---AAAATGCA-T  1092

seq1  AGAATATAAAATTAGTGAAATAATAAAACCAGTAAAATAGAAATGAT  1146
      ||||||||||| ||||| |||||||||| |||| |||||| ||||||
seq2  AGAATATAAAA-TAGTG-AATAATAAAA-CAGT-AAATAG-AATGAT  1134


seq1: chr11_9319700_9320737
seq2: B6Ng01-039M16.g_68_1094 (reverse)

seq1  CCAGAAGTTAGGAGGCAGAGGAAGGAGGGTTTTCATAAGTTCAACCTGGT  50
      ||||||||   |||||||||  | ||||| ||||||||| |||||   ||
seq2  CCAGAAGT--AGAGGCAGAG--AAGAGGG-TTTCATAAG-TCAAC--TGT  42

seq1  CTACATAGTCAATTTAAGGATATCCAGGACTATATAGAGAGACCCTGAAT  100
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CTACATAGTCAATTTAAGGATATCCAGGACTATATAGAGAGA-CCTGAAT  91

seq1  CAATCAATCAATCAATCAATCAATCAATCAGTCAATCAATCAATGTAACT  150
      ||||||||| ||||||| ||||||||||||||||||||||||||||||||
seq2  CAATCAATC-ATCAATC-ATCAATCAATCAGTCAATCAATCAATGTAACT  139

seq1  AGGAGATACAACCTTACAACAAACTTTCTGAACAAGGTAAAGGTATAGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGATACAACCTTACAACAAACTTTCTGAACAAGGTAAAGGTATAGGT  189

seq1  ATAGGTATAGGTATAGGTATAGGTATAGGTATAGGTATAAAGTATGCAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGTATAGGTATAGGTATAGGTATAGGTATAGGTATAAAGTATGCAAT  239

seq1  AACAACTAATGAAAAGGAGGCCATGAATTTGAAGGAGAGTAGGGAGGAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACTAATGAAAAGGAGGCCATGAATTTGAAGGAGAGTAGGGAGGAGT  289

seq1  AAATAGGAAGATTTGGAAGGAGGAAGGGGAAGGAAGAAATGTTAGAATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGGAAGATTTGGAAGGAGGAAGGGGAAGGAAGAAATGTTAGAATGT  339

seq1  TTTATAATCTCAAAATAAATAAAAATTAAAAAACACCAAGATGAATCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAATCTCAAAATAAATAAAAATTAAAAAACACCAAGATGAATCTTT  389

seq1  AATTACAGAAAGCCTTTGGATATGAATATCCAGAATGTGGCCCTTTCCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACAGAAAGCCTTTGGATATGAATATCCAGAATGTGGCCCTTTCCTC  439

seq1  CTCTGGCAGGCAAATGTGATAAAAATGATGATATTCAGTGTAGAGAGATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGCAGGCAAATGTGATAAAAATGATGATATTCAGTGTAGAGAGATA  489

seq1  TAAGCTGAAAGCAGAGACACTAAGTAGGGAGGGAAGTACTGTGGACAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTGAAAGCAGAGACACTAAGTAGGGAGGGAAGTACTGTGGACAGCA  539

seq1  TATGAGTAAGAATAATAGAGAGATTTTATATCAGTTGCTCCAATGCATGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGTAAGAATAATAGAGAGATTTTATATCAGTTGCTCCAATGCATGA  589

seq1  ATTTTTCAAAACCTTCTATTTGGAGGCTGGATGTCTGCTTTTTGTCCAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCAAAACCTTCTATTTGGAGGCTGGATGTCTGCTTTTTGTCCAGT  639

seq1  TGATGCTTTTAAAGTAGTGACTTCCCCTCACTGTATATGGCCCCTTCCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCTTTTAAAGTAGTGACTTCCCCTCACTGTATATGGCCCCTTCCCA  689

seq1  AGAAGCCCTGGGTTTGGCTAATTTGGGAAGTAAAAATCAGCATCCAAGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCCCTGGGTTTGGCTAATTTGGGAAGTAAAAATCAGCATCCAAGTT  739

seq1  CTCTTACCTCTCTGACTTGCCAAAGGAACCGTGTGGAATCTGGCCAAATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTACCTCTCTGACTTGCCAAAGGAACCGTGTGGAATCTGGCCAAATG  789

seq1  TGAATGTATGAGTCTGAATAAATTCCACATTCAGTTTCTCCAGATCCTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGTATGAGTCTGAATAAATTCCACATTCAGTTTCTCCAGATCCTGA  839

seq1  CTCCAGCACATCCAGTTTTGGCAAGGAGAAGCAGGAAAAATGACGCTCCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGCACATCCAGTTTTGGCAAGGAGAAGCAGGAAAAATGACGCTCCC  889

seq1  CAATTCTCTTCTTCCTCAGTTTGCTAAGCAGCAAGTGGTAAAGTAACCCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCTCTTCTTCCTCAGTTTGCTAAGCAGCAAGTGGTAAAGTAACCCC  939

seq1  ACCAGGCAGTGAGCACCCCTTCCCTTTGAAGTCCTTTCCCACCCTCAGAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGCAGTGAGCACCCCTTCCCTTTGAAGTCCTTTCCCACCCTCAGAT  989

seq1  GAGCCATCATTCAACTTAATCCCAACCAGGTTGAATTC  1038
      ||||||||||||||||||||||||||||||||||||||
seq2  GAGCCATCATTCAACTTAATCCCAACCAGGTTGAATTC  1027


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