BAC Information

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BAC

Clone NameB6Ng01-040E24
Chromosome11 (Build37)
Map Location 29,268,409 - 29,354,707
singlet/doubletdoublet
Overlap geneLOC100042985, A430106J12Rik
Upstream geneCcdc85a, Efemp1, LOC382504, Pnpt1, A630052C17Rik, Smek2, LOC100042972, Ccdc104, LOC672637
Downstream gene2010316F05Rik, LOC100042990, Mtif2, Rps27a, 1700034F02Rik, LOC628830, LOC666403, Rtn4, C230094A16Rik, 4931440F15Rik, Spnb2, EG666427, LOC666432, 4930505A04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-040E24.bB6Ng01-040E24.g
ACCDH867323DH867324
length1,140944
definitionDH867323|Mus musculus domesticus DNA, BAC clone: B6Ng01-040E24, 5' end.DH867324|Mus musculus domesticus DNA, BAC clone: B6Ng01-040E24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,353,565 - 29,354,707)(29,268,409 - 29,269,350)
sequence
gaattcactatgtagaccaggatggccttaaactcacgaagattcacctg
cttctgtttctagagcgctaggttgaaaggcatcactgtgccttttcaag
cctttctatgtgggggctaaaatccagagcattgtgcatgtatggcaaga
tatccaacactgagcttcctcctcagtccttatgtaacttatgtccttat
gtatgtaaaatgccaaataaaccatttgaggagatgcttttatataattc
tgaagcatgtattcacaattgttattttgctaaataatatgtctactgtt
tataaagtctagagaaaatacattgttctaatgggttttgagataggatt
tcactatgtattcaaacagtgatctgaatctcctgagctggggctacagg
tttatacaatgatatccatgacaggtataatatgaatattatacattgtt
gtatgtgtgtgtacatgtgtatatttaatcttagaattttcaagtttcag
tagaacaataaatgaatgagttattagtaaaatgaataaatgaataaata
ttctattttctcacgttgaaattacacttatttatttgcttatttattag
tgtatgtgtatgggcacattctacagcactcaaatgtagctcagagtaca
atttgcagtggttggttctagctttccatcatgtggatccttggacttaa
aactctagtcatgagccttgacagcaggtgtctttaacccactgagccat
ataacttaccctttcctgtttttatttcttgattccacatactctctttt
tcattctcgtagagaaacttaacaaaacctcatgtttgctgaaaataagg
aagttaacagaaacgaggaatagatgcaagggctgtcaaactcagacaaa
aagtgtttttttctaattcatttgtatatacaaagccttcattgatcaca
aaatcctaataccagaaacaataatcagaaaaatattttccagccaggag
tggtggtgcatgctttaataccagcattggggaggcagaaggcaggcaga
ttttctgagtccagccagcctgggctaccgagtgtgagttccaggacgct
acaggctaccaaagaattctatcttggacaacaaacaaac
gaattctgtctctaggactcacatggtagaaggagataacctaattttat
aagttgtcctctgatacacacacacacacacacacacacacacacacaca
cacaccatctactaacacaaaataataagaggatgggtttttttgttttt
gtttttgtttttttgtagggtgagtcagggtcttattatgtagctctggc
tgacctggagcttgctttgtagaccaggctggcttcaaattcatagagat
ctgcctgcctctgactacagagttctgggattaaaaccatcacacctgat
aggatgaataggtacacacacacacacacacacacacacacacaccactt
cagatccatagggagtggcagtattaggagacatggccttgttggaagag
gtagaacttctgtaggtgggccttgaggtttcctatactcagattcagcc
caacgtggaagaaaccctcctcctggctggctgaagaggacagtctcctg
ttgctgcctttagatcaagatgtagaactctctcttccagcaccatgtct
acctggatgctgtcctacttctcaccatgatggtggactgaacctctgaa
actgtaagtcagccccaattaaatgtttcctaagagttgccttggtcata
gtgtctctttaaagaaatgaaatccttaactgagacagatgctctgatgg
agatgcctgtttactgaaaagcaagacttaggagagcacaggtaagcaaa
gtggagccactttaggagaagagcatgaaccatttcatgtgccaacacat
ggcattttagagcattttacaaaaataaattggggggttagttacttgtg
actgcaaagagtgcttcatttcatagactggtttccgaaagagacttttg
acctcagagggtaacaggagttttccctggctaacagaagtgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_29353565_29354707
seq2: B6Ng01-040E24.b_45_1184 (reverse)

seq1  GTTTGTTTGT--TTCAAGATAGGGTTTCTCTGTGTAGCC-GTAGCTGTCC  47
      ||||||||||  | ||||||| |  |||| || |||||| ||||| ||||
seq2  GTTTGTTTGTTGTCCAAGATA-GAATTCTTTG-GTAGCCTGTAGC-GTCC  47

seq1  TGGAACT--CACTCTGTAGACCAGGCTGGCCTTGAACTCAG-AAATCTGC  94
      |||||||  ||||| |||| ||||||||||  || |||||| ||||||||
seq2  TGGAACTCACACTCGGTAGCCCAGGCTGGC--TGGACTCAGAAAATCTGC  95

seq1  CTGCC-TCTGCCTCCCAAATGCTGGTATTAAAGGCATGCACCACCACTTC  143
      ||||| |||||||||| ||||||||||||||| |||||||||||||| ||
seq2  CTGCCTTCTGCCTCCCCAATGCTGGTATTAAA-GCATGCACCACCAC-TC  143

seq1  CTGGCTGGAAAATATTTTTCTGATTATTGTTTTCTTGGTATTAGGATTTT  193
      ||||||||||||||||||||||||||||||||   |||||||||||||||
seq2  CTGGCTGGAAAATATTTTTCTGATTATTGTTT--CTGGTATTAGGATTTT  191

seq1  GTGATCAATGAAGGCTTTGTATATACAAATGAATTAGAAAAAAACACTTT  243
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GTGATCAATGAAGGCTTTGTATATACAAATGAATTAGAAAAAAACAC-TT  240

seq1  TTTGTCTGAGTTTGACAGCCCTTGCATCTATTCCTCGTTTCTGTTAACTT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTGAGTTTGACAGCCCTTGCATCTATTCCTCGTTTCTGTTAACTT  290

seq1  CCTTATTTTCAGCAAACATGAGGTTTTGTTAAGTTTCTCTACGAGAATGA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATTTTCAGCAAACATGAGGTTTTGTTAAGTTTCTCTACGAGAATGA  340

seq1  AAAAGAGAGTATGTGGAATCAAGAAATAAAAACAGGAAAGGGTAAGTTAT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAGAGTATGTGGAATCAAGAAATAAAAACAGGAAAGGGTAAGTTAT  390

seq1  ATGGCTCAGTGGGTTAAAGACACCTGCTGTCAAGGCTCATGACTAGAGTT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTCAGTGGGTTAAAGACACCTGCTGTCAAGGCTCATGACTAGAGTT  440

seq1  TTAAGTCCAAGGATCCACATGATGGAAAGCTAGAACCAACCACTGCAAAT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTCCAAGGATCCACATGATGGAAAGCTAGAACCAACCACTGCAAAT  490

seq1  TGTACTCTGAGCTACATTTGAGTGCTGTAGAATGTGCCCATACACATACA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTCTGAGCTACATTTGAGTGCTGTAGAATGTGCCCATACACATACA  540

seq1  CTAATAAATAAGCAAATAAATAAGTGTAATTTCAACGTGAGAAAATAGAA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATAAATAAGCAAATAAATAAGTGTAATTTCAACGTGAGAAAATAGAA  590

seq1  TATTTATTCATTTATTCATTTTACTAATAACTCATTCATTTATTGTTCTA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATTCATTTATTCATTTTACTAATAACTCATTCATTTATTGTTCTA  640

seq1  CTGAAACTTGAAAATTCTAAGATTAAATATACACATGTACACACACATAC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAACTTGAAAATTCTAAGATTAAATATACACATGTACACACACATAC  690

seq1  AACAATGTATAATATTCATATTATACCTGTCATGGATATCATTGTATAAA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATGTATAATATTCATATTATACCTGTCATGGATATCATTGTATAAA  740

seq1  CCTGTAGCCCCAGCTCAGGAGATTCAGATCACTGTTTGAATACATAGTGA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTAGCCCCAGCTCAGGAGATTCAGATCACTGTTTGAATACATAGTGA  790

seq1  AATCCTATCTCAAAACCCATTAGAACAATGTATTTTCTCTAGACTTTATA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTATCTCAAAACCCATTAGAACAATGTATTTTCTCTAGACTTTATA  840

seq1  AACAGTAGACATATTATTTAGCAAAATAACAATTGTGAATACATGCTTCA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTAGACATATTATTTAGCAAAATAACAATTGTGAATACATGCTTCA  890

seq1  GAATTATATAAAAGCATCTCCTCAAATGGTTTATTTGGCATTTTACATAC  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTATATAAAAGCATCTCCTCAAATGGTTTATTTGGCATTTTACATAC  940

seq1  ATAAGGACATAAGTTACATAAGGACTGAGGAGGAAGCTCAGTGTTGGATA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGACATAAGTTACATAAGGACTGAGGAGGAAGCTCAGTGTTGGATA  990

seq1  TCTTGCCATACATGCACAATGCTCTGGATTTTAGCCCCCACATAGAAAGG  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCCATACATGCACAATGCTCTGGATTTTAGCCCCCACATAGAAAGG  1040

seq1  CTTGAAAAGGCACAGTGATGCCTTTCAACCTAGCGCTCTAGAAACAGAAG  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAAAGGCACAGTGATGCCTTTCAACCTAGCGCTCTAGAAACAGAAG  1090

seq1  CAGGTGAATCTTCGTGAGTTTAAGGCCATCCTGGTCTACATAGTGAATTC  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGAATCTTCGTGAGTTTAAGGCCATCCTGGTCTACATAGTGAATTC  1140

seq1: chr11_29268409_29269350
seq2: B6Ng01-040E24.g_69_1012

seq1  GAATTCTGTCTCTAGGACTCACATGGTAGAAGGAGATAACCTAATTTTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTCTCTAGGACTCACATGGTAGAAGGAGATAACCTAATTTTAT  50

seq1  AAGTTGTCCTCTGATACACACACACACACACACACACACACACACACACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGTCCTCTGATACACACACACACACACACACACACACACACACACA  100

seq1  CACACCATCTACTAACACAAAATAATAAGAGGATGGGTTTTTTTGTTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCATCTACTAACACAAAATAATAAGAGGATGGGTTTTTTTGTTTTT  150

seq1  GTTTTTGTTTTTTTGTAGGGTGAGTCAGGGTCTTATTATGTAGCTCTGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTGTTTTTTTGTAGGGTGAGTCAGGGTCTTATTATGTAGCTCTGGC  200

seq1  TGACCTGGAGCTTGCTTTGTAGACCAGGCTGGCTTCAAATTCATAGAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTGGAGCTTGCTTTGTAGACCAGGCTGGCTTCAAATTCATAGAGAT  250

seq1  CTGCCTGCCTCTGACTACAGAGTTCTGGGATTAAAACCATCACACCTGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTGCCTCTGACTACAGAGTTCTGGGATTAAAACCATCACACCTGAT  300

seq1  AGGATGAATAGGTACACACACACACACACACACACACACACACACCACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGAATAGGTACACACACACACACACACACACACACACACACCACTT  350

seq1  CAGATCCATAGGGAGTGGCAGTATTAGGAGACATGGCCTTGTTGGAAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCCATAGGGAGTGGCAGTATTAGGAGACATGGCCTTGTTGGAAGAG  400

seq1  GTAGAACTTCTGTAGGTGGGCCTTGAGGTTTCCTATACTCAGATTCAGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAACTTCTGTAGGTGGGCCTTGAGGTTTCCTATACTCAGATTCAGCC  450

seq1  CAACGTGGAAGAAACCCTCCTCCTGGCTGGCTGAAGAGGACAGTCTCCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACGTGGAAGAAACCCTCCTCCTGGCTGGCTGAAGAGGACAGTCTCCTG  500

seq1  TTGCTGCCTTTAGATCAAGATGTAGAACTCTCTCTTCCAGCACCATGTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGCCTTTAGATCAAGATGTAGAACTCTCTCTTCCAGCACCATGTCT  550

seq1  ACCTGGATGCTGTCCTACTTCTCACCATGATGGTGGACTGAACCTCTGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGATGCTGTCCTACTTCTCACCATGATGGTGGACTGAACCTCTGAA  600

seq1  ACTGTAAGTCAGCCCCAATTAAATGTTTCCTAAGAGTTGCCTTGGTCATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTAAGTCAGCCCCAATTAAATGTTTCCTAAGAGTTGCCTTGGTCATA  650

seq1  GTGTCTCTTTAAAGAAATG-AATCCTTAACTGAGACAGATGCTCTGATGG  699
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GTGTCTCTTTAAAGAAATGAAATCCTTAACTGAGACAGATGCTCTGATGG  700

seq1  AGATGCCTG-TTACTGAAAAGCAAGACTTAGGAGAGCACAGGTAAGCAAA  748
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCCTGTTTACTGAAAAGCAAGACTTAGGAGAGCACAGGTAAGCAAA  750

seq1  GTGGAGCCAC-TTAGGAGAAGAGCATGAACCA-TTCATGTGCCAAACACA  796
      |||||||||| ||||||||||||||||||||| |||||||||| ||||||
seq2  GTGGAGCCACTTTAGGAGAAGAGCATGAACCATTTCATGTGCC-AACACA  799

seq1  TGGCA-TTTAGAGCATTTTACAGAAATAAATT-GGGGGTTAGTTACTATG  844
      ||||| |||||||||||||||| ||||||||| |||||||||||||| ||
seq2  TGGCATTTTAGAGCATTTTACAAAAATAAATTGGGGGGTTAGTTACT-TG  848

seq1  TGACTGCAAAGAGTGCTTCATTTCATAGACTGCTTTCGGAAAGGAGACTT  894
      |||||||||||||||||||||||||||||||| |||| |||| |||||||
seq2  TGACTGCAAAGAGTGCTTCATTTCATAGACTGGTTTCCGAAA-GAGACTT  897

seq1  TTGACCTCAGAGGGTAGACAGGAG-TTTCCCTGGCTAACAGGAAGTGAA  942
      |||||||||||||||| ||||||| ||||||||||||||| ||||||||
seq2  TTGACCTCAGAGGGTA-ACAGGAGTTTTCCCTGGCTAACA-GAAGTGAA  944