BAC Information

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BAC

Clone NameB6Ng01-040I03
Chromosome11 (Build37)
Map Location 13,511,465 - 13,602,211
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC627244
Downstream geneLOC432535, 1700046C09Rik, 1700054H16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-040I03.bB6Ng01-040I03.g
ACCDH867450DH867451
length1,0521,051
definitionDH867450|Mus musculus domesticus DNA, BAC clone: B6Ng01-040I03, 5' end.DH867451|Mus musculus domesticus DNA, BAC clone: B6Ng01-040I03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,511,465 - 13,512,510)(13,601,148 - 13,602,211)
sequence
gaattcagttcctatcttacagggataagttttcttaagagtgcagattg
ctgtaaaggaaggctacccacggtgtcctctctatttgtccttctctaat
aagattctaatcataagctatgcatatgtcagtgcctcctgctcataaaa
attcagtatccaaagatataagaatacaagtattaattctctataaacaa
ttaactttgggtactcttgttacagtaacagcataaaaatctaaaagagc
ataccacataatactcttcaataattatacatgtaatactttgccaactg
tgatcttcttgtgaatataaataattaataagcattgttttatcctatgc
ttggagcatagttcatacttaaactaaatgacagtgaggcagatatttat
aaagttaacggcttacattttaaaagttataaaataacaccttgcagttc
taaacatattcttcaattagcaaaggtgttgttaatattgacaataactg
ataatttgcaatgttattttctgtttggttgaacataattcaggaacata
gaaaagtaaaccaaattatctactttacttttgtgatgctttttatcgag
atgattttagcttttacagaatctgtaaatacttcctctctttccggagg
acatccaattgtctccaatcaaatcccatgcatttttaaatgttaagtgg
gtgatttttttcccccttctgattactatgtctgaaagtttttcctgtct
gcaggcaaagtcaaattttattgctttctttttcttgaaattcaatcagg
tcttcatattcaatacttcaagatatctcttaagcattttggtcttttct
gtgaaatgccttcccaccacaaaccataacacttgtctgtaacttaagaa
ctaatcacttggcacaataggagtcaggtaaacagtgtaaagagccctgc
tgctgaggttgtgtgtacatagtgattggagaaatgcagactttctcatc
gactgcactatatttttttggtgctgctggtggttggtgtttgttgttgt
tt
gaattcctgttgatagaggatatttcagctttaaaagggttgttttggaa
ttttatgaacctgtgaaactgccctcatcccaaggtcctttagcttatct
tccaattaacatgcggttgcttgccaagagatacttgaaaattagtatct
cattaaagccttaatttgcatttctcttattatgaatgtgagagctgtta
ttttcgtatttaacaggacatttataatttctgtaagctattgtttatgc
acctcatctattgtgctgaactctttgcttctttttgcctataatttcat
tactcgagaaacttacaaatttagctcgaattaaatattcaacagttcca
aagttcattattttaaattttaaagtgtaactggccaaatatttgaatta
attgcttcatatttttacaagacaaatttgtttttactaagatatttttg
acatttgttcctgaggggttggggggaaaatcacattctttcctttggat
aatttaaataatttcatacttacaatgtgagaatgtttttctcatataat
atagttgccaattaacattcctggcaaaggggaacattctgtaaatctcc
ccttgttttgacctctccaactttctaaaactttcagttaattcctttaa
tttctgtcacctgctaaacctttgcttattcaaaggtctcaatgcagtct
ttgaaatctgatggtcttgagtagctgaattctcatgcccttcacttcct
ttgtatatattcttttattgctagccaatcatgacaaacaatgaggctgg
gtgacaatacacaattaccacctgcattagaataaaagcaaaagtgaaaa
agtcctgtgcttgctaagcaagatttgggtcatggcatattttttcaaaa
gaaattgctttgcaaatctaattttgtttggtctttattcctttgtgaaa
catgtaatatctttgctttccctaaactaataataatgttttcatatcat
tgaaacacataattctacaatgatttaaatactatatctatacctatgag
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_13511465_13512510
seq2: B6Ng01-040I03.b_45_1096

seq1  GAATTCAGTTCCTATCTTACAGGGATAAGTTTTCTTAAGAGTGCAGATTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTCCTATCTTACAGGGATAAGTTTTCTTAAGAGTGCAGATTG  50

seq1  CTGTAAAGGAAGGCTACCCACGGTGTCCTCTCTATTTGTCCTTCTCTAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAAGGAAGGCTACCCACGGTGTCCTCTCTATTTGTCCTTCTCTAAT  100

seq1  AAGATTCTAATCATAAGCTATGCATATGTCAGTGCCTCCTGCTCATAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTCTAATCATAAGCTATGCATATGTCAGTGCCTCCTGCTCATAAAA  150

seq1  ATTCAGTATCCAAAGATATAAGAATACAAGTATTAATTCTCTATAAACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGTATCCAAAGATATAAGAATACAAGTATTAATTCTCTATAAACAA  200

seq1  TTAACTTTGGGTACTCTTGTTACAGTAACAGCATAAAAATCTAAAAGAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTTTGGGTACTCTTGTTACAGTAACAGCATAAAAATCTAAAAGAGC  250

seq1  ATACCACATAATACTCTTCAATAATTATACATGTAATACTTTGCCAACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCACATAATACTCTTCAATAATTATACATGTAATACTTTGCCAACTG  300

seq1  TGATCTTCTTGTGAATATAAATAATTAATAAGCATTGTTTTATCCTATGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTTCTTGTGAATATAAATAATTAATAAGCATTGTTTTATCCTATGC  350

seq1  TTGGAGCATAGTTCATACTTAAACTAAATGACAGTGAGGCAGATATTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGCATAGTTCATACTTAAACTAAATGACAGTGAGGCAGATATTTAT  400

seq1  AAAGTTAACGGCTTACATTTTAAAAGTTATAAAATAACACCTTGCAGTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTAACGGCTTACATTTTAAAAGTTATAAAATAACACCTTGCAGTTC  450

seq1  TAAACATATTCTTCAATTAGCAAAGGTGTTGTTAATATTGACAATAACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACATATTCTTCAATTAGCAAAGGTGTTGTTAATATTGACAATAACTG  500

seq1  ATAATTTGCAATGTTATTTTCTGTTTGGTTGAACATAATTCAGGAACATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTGCAATGTTATTTTCTGTTTGGTTGAACATAATTCAGGAACATA  550

seq1  GAAAAGTAAACCAAATTATCTACTTTACTTTTGTGATGCTTTTTATCGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGTAAACCAAATTATCTACTTTACTTTTGTGATGCTTTTTATCGAG  600

seq1  ATGATTTTAGCTTTTACAGAATCTGTAAATACTTCCTCTCTTTCCGGAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTTTAGCTTTTACAGAATCTGTAAATACTTCCTCTCTTTCCGGAGG  650

seq1  ACATCCAATTGTCTCCAATCAAATCCCATGCATTTTTAAATGTTAAGTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCAATTGTCTCCAATCAAATCCCATGCATTTTTAAATGTTAAGTGG  700

seq1  GTGATTTTTTTCCCCCTTCTGATTACTATGTCTGAAAGTTTTTCCTGTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTTTTTTCCCCCTTCTGATTACTATGTCTGAAAGTTTTTCCTGTCT  750

seq1  GCAGGCAAAGTCAAATTTTATTGCTTTCTTTTTCTTGAAATTCAATCAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCAAAGTCAAATTTTATTGCTTTCTTTTTCTTGAAATTCAATCAGG  800

seq1  TCTTCATATTCAATACTTCAAGATATCTCTTAAGCATTTTGGTCTTTTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCATATTCAATACTTCAAGATATCTCTTAAGCATTTTGGTCTTTTCT  850

seq1  GTGAAATGCCTTCCCACCACAAACCATAACACTTGTCTGTAACTTAAGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAATGCCTTCCCACCACAAACCATAACACTTGTCTGTAACTTAAGAA  900

seq1  CTAATCACTTGGCACAATAGGAGTCAGGGTAAAACAGTGTAAAAGAGCCC  950
      ||||||||||||||||||||||||||||   ||||||||| |||||||||
seq2  CTAATCACTTGGCACAATAGGAGTCAGG--TAAACAGTGT-AAAGAGCCC  947

seq1  TGCTGCTGAGGTTGTGTGTACATAGTGATTGGAGAAATGCAGACTTTCTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCTGAGGTTGTGTGTACATAGTGATTGGAGAAATGCAGACTTTCTC  997

seq1  ATCGACTGCACTATATTTTTTTGTTGCTGC-------TGTTGTTTGT--T  1041
      ||||||||||||||||||||||| ||||||       || |||||||  |
seq2  ATCGACTGCACTATATTTTTTTGGTGCTGCTGGTGGTTGGTGTTTGTTGT  1047

seq1  TGTTT  1046
      |||||
seq2  TGTTT  1052

seq1: chr11_13601148_13602211
seq2: B6Ng01-040I03.g_69_1119 (reverse)

seq1  TCTCATAGGTATAGATTATGTATTTTAAATACATTGTAGAA-TATGTGTA  49
      ||||||||||||||||   ||| ||||||| |||||||||| ||||||| 
seq2  TCTCATAGGTATAGATATAGTA-TTTAAAT-CATTGTAGAATTATGTGT-  47

seq1  TTCAAATGATATGAAAACATTATTATTAGTTTTAGGGAAAAGCAAAGAAT  99
      ||| ||||||||||||||||||||||||| ||||||| ||||||||| ||
seq2  TTC-AATGATATGAAAACATTATTATTAG-TTTAGGG-AAAGCAAAG-AT  93

seq1  ATTTACAATGTTTCACAAAGGAATAAAAGAACAAAACAAAATTAGATTTG  149
      | |||| ||||||||||||||||||||   || |||||||||||||||||
seq2  A-TTAC-ATGTTTCACAAAGGAATAAA--GACCAAACAAAATTAGATTTG  139

seq1  CAAAGCAATTTCTTTTTGAAAAAAATATGCCATGACCCAAATCTTGCTTA  199
      ||||||||||||||||   |||||||||||||||||||||||||||||||
seq2  CAAAGCAATTTCTTTT--GAAAAAATATGCCATGACCCAAATCTTGCTTA  187

seq1  GCAAGCACAGGACTTTTTTCACTTTTGCTTTTATTCTAATGCAGGTGGTA  249
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GCAAGCACAGGAC-TTTTTCACTTTTGCTTTTATTCTAATGCAGGTGGTA  236

seq1  ATTGTGTATTGTCACCCAGCCTCATTGTTTGTCATGATTGGCTAGCAATA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGTATTGTCACCCAGCCTCATTGTTTGTCATGATTGGCTAGCAATA  286

seq1  AAAGAATATATACAAAGGAAGTGAAGGGCATGAGAATTCAGCTACTCAAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATATATACAAAGGAAGTGAAGGGCATGAGAATTCAGCTACTCAAG  336

seq1  ACCATCAGATTTCAAAGACTGCATTGAGACCTTTGAATAAGCAAAGGTTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCAGATTTCAAAGACTGCATTGAGACCTTTGAATAAGCAAAGGTTT  386

seq1  AGCAGGTGACAGAAATTAAAGGAATTAACTGAAAGTTTTAGAAAGTTGGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGTGACAGAAATTAAAGGAATTAACTGAAAGTTTTAGAAAGTTGGA  436

seq1  GAGGTCAAAACAAGGGGAGATTTACAGAATGTTCCCCTTTGCCAGGAATG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCAAAACAAGGGGAGATTTACAGAATGTTCCCCTTTGCCAGGAATG  486

seq1  TTAATTGGCAACTATATTATATGAGAAAAACATTCTCACATTGTAAGTAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTGGCAACTATATTATATGAGAAAAACATTCTCACATTGTAAGTAT  536

seq1  GAAATTATTTAAATTATCCAAAGGAAAGAATGTGATTTTCCCCCCAACCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTATTTAAATTATCCAAAGGAAAGAATGTGATTTTCCCCCCAACCC  586

seq1  CTCAGGAACAAATGTCAAAAATATCTTAGTAAAAACAAATTTGTCTTGTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGAACAAATGTCAAAAATATCTTAGTAAAAACAAATTTGTCTTGTA  636

seq1  AAAATATGAAGCAATTAATTCAAATATTTGGCCAGTTACACTTTAAAATT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATGAAGCAATTAATTCAAATATTTGGCCAGTTACACTTTAAAATT  686

seq1  TAAAATAATGAACTTTGGAACTGTTGAATATTTAATTCGAGCTAAATTTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAATGAACTTTGGAACTGTTGAATATTTAATTCGAGCTAAATTTG  736

seq1  TAAGTTTCTCGAGTAATGAAATTATAGGCAAAAAGAAGCAAAGAGTTCAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTTCTCGAGTAATGAAATTATAGGCAAAAAGAAGCAAAGAGTTCAG  786

seq1  CACAATAGATGAGGTGCATAAACAATAGCTTACAGAAATTATAAATGTCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATAGATGAGGTGCATAAACAATAGCTTACAGAAATTATAAATGTCC  836

seq1  TGTTAAATACGAAAATAACAGCTCTCACATTCATAATAAGAGAAATGCAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAATACGAAAATAACAGCTCTCACATTCATAATAAGAGAAATGCAA  886

seq1  ATTAAGGCTTTAATGAGATACTAATTTTCAAGTATCTCTTGGCAAGCAAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGGCTTTAATGAGATACTAATTTTCAAGTATCTCTTGGCAAGCAAC  936

seq1  CGCATGTTAATTGGAAGATAAGCTAAAGGACCTTGGGATGAGGGCAGTTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCATGTTAATTGGAAGATAAGCTAAAGGACCTTGGGATGAGGGCAGTTT  986

seq1  CACAGGTTCATAAAATTCCAAAACAACCCTTTTAAAGCTGAAATATCCTC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGTTCATAAAATTCCAAAACAACCCTTTTAAAGCTGAAATATCCTC  1036

seq1  TATCAACAGGAATTC  1064
      |||||||||||||||
seq2  TATCAACAGGAATTC  1051