BAC Information

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BAC

Clone NameB6Ng01-041B18
Chromosome11 (Build37)
Map Location 85,308,979 - 85,476,484
singlet/doubletdoublet
Overlap geneBcas3
Upstream geneAatf, Lhx1, Mrm1, BC022224, Ggnbp2, Pigw, Znhit3, Car4, Usp32, LOC668794, LOC234848, 1700125H20Rik, Appbp2, D630032N06Rik, Ppm1d
Downstream geneTbx2, Tbx4, LOC668751, Brip1, LOC668803, Ints2, Thrap1, 0610013E23Rik, Rps6kb1, Tubd1, LOC100043687, Tmem49
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-041B18.bB6Ng01-041B18.g
ACCDH867867DH867868
length1,1071,213
definitionDH867867|Mus musculus domesticus DNA, BAC clone: B6Ng01-041B18, 5' end.DH867868|Mus musculus domesticus DNA, BAC clone: B6Ng01-041B18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,308,979 - 85,310,096)(85,475,260 - 85,476,484)
sequence
gaattctaaaggtttgatctccacataaaaaccatcatggcaccacacca
gcccaaccatcttcccaagtctcaacatgttctgacaattgctgagaact
tggtaatttttggatataaaatttcttcctgctgctcataaaggacatcc
tgcttcctctgtttagtagcttctctgttggtactggtgtgatattatag
aaagaatgtgctttattttaatcattttattttataactaatatcctttt
ccctattcttaatacttaagaatagcactggttgttctgtaaatatctta
tccacatacataatcacttttatttttatcctttacttttttatcttcca
ggaatgcttttagtcacaacagatactcttggccatgactttcatgtctt
ccaaatcctgactcatccttggtcatcatcacagtgtgctgtccatcatc
tgtacacacttcacaggggagagaccgaggccaaagtaagtgtgcgctct
ccctgaagggattgatttcttggtgcagtatggcatttaaggtaattgga
gattcataccaatttggagattagtatttatgagaaaacaatattctctg
ttttagagtaagttctagtaaattgtggaaagatacctagtctacctaat
gattcatagtgaaaaaactctacctcattgttattgaggactagagaaat
ggttcttgctgttcttcagtggacctatgttcaaatcctagaacctacac
ccagcagctcgcaacctcctgcagccgcaggagaagatcaaggagagcca
gtgttctcttttactgtctgtaggcacctgcacacactcgtgtgacactc
ataaacatccacacagttaaacaataaagttatctttttaaaatgctgac
atgtaagtagatcagcctgaccttattctttatcctgtctcccttttttt
tgctcaaaggaaaccctgctgccagctgatgtctgttctgagggcctttt
tgctagcactttgtgttttttagccttttaatgtaattggccagtatagt
agaacatatattttctttaaggagatgtttcagtttgtatttgagaacag
gtctcat
gaattcacatgtagaaagcaaaagcacttagaaacttccaaaggcttgaa
caagtaagacttgtttcactcaccctgaccccagccaaatgtattccaca
taaacacttctggaaaaaattcagagcaacaaatagaacgaattatgagc
atatctatgaccgaatttaaacagcaggaaaaaccacgtatacataggaa
aaggtataaacagagctggctctgggcaacacagggtaaagctgtgtgca
tacacagaaaaacaaagtgaaggtacagggacaggcaggtatttcaaata
acatacaccttaaaacaaaacccacgtatacaatgtgtatggcttcataa
ataacctacattgcataacacacaaaaaagaaaaaaggctgtctctcaaa
gtatctgggttaaggtgtgcacatgcacaaacacatgttctgtcttccta
tcacatctctcatcaagaaatactatttaggaaaagacaatagagaagca
aactgtacatctgtgaaataggctatttgctattcaacttgaagacgaga
tggaaaaatcaagggaatttgtttggcacaaggctaatacttgtagtcaa
atggaaacacagaatataaactaaccacaattcaaacagatgatactaaa
ttgtgtttaactgtaaaaggtaagtaatttttcatctaggcatataattt
tttttttttttacaaatacttctgtgctaaaacttctcaagagtcaaaga
tgctgtgacatgctttttaattgattcgttttacactcagagggaggata
acagtgatttgtgaaaggactttttttccttgccttgcacacatctctca
tttgtccatcttaattcatttaaggaaataaggacagtttgaccgatgaa
tgaaccatattttaaccgaggacactttctatttaaactggagtgtatca
gccactgtaattgtcagttagtacttccgttccctacttttgtttttcga
ggtcacagcgtggtcacagaagaagaggacatggtacgatatggatcact
actccaccatttagcttgtaggctgtactcaaaaggagaaacttcaggga
gggactgcctgcctatagagaggctccaccgtgacataccaaagtccctt
gggaagcaactcaagatctattatgcttggatacacgccttgcctctaca
gcacgtgttttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_85308979_85310096
seq2: B6Ng01-041B18.b_42_1148

seq1  GAATTCTAAAGGTTTGATCTCCACATAAAAACCATCATGGCACCACACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAAGGTTTGATCTCCACATAAAAACCATCATGGCACCACACCA  50

seq1  GCCCAACCATCTTCCCAAGTCTCAACATGTTCTGACAATTGCTGAGAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAACCATCTTCCCAAGTCTCAACATGTTCTGACAATTGCTGAGAACT  100

seq1  TGGTAATTTTTGGATATAAAATTTCTTCCTGCTGCTCATAAAGGACATCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAATTTTTGGATATAAAATTTCTTCCTGCTGCTCATAAAGGACATCC  150

seq1  TGCTTCCTCTGTTTAGTAGCTTCTCTGTTGGTACTGGTGTGATATTATAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCCTCTGTTTAGTAGCTTCTCTGTTGGTACTGGTGTGATATTATAG  200

seq1  AAAGAATGTGCTTTATTTTAATCATTTTATTTTATAACTAATATCCTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATGTGCTTTATTTTAATCATTTTATTTTATAACTAATATCCTTTT  250

seq1  CCCTATTCTTAATACTTAAGAATAGCACTGGTTGTTCTGTAAATATCTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTATTCTTAATACTTAAGAATAGCACTGGTTGTTCTGTAAATATCTTA  300

seq1  TCCACATACATAATCACTTTTATTTTTATCCTTTACTTTTTTATCTTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACATACATAATCACTTTTATTTTTATCCTTTACTTTTTTATCTTCCA  350

seq1  GGAATGCTTTTAGTCACAACAGATACTCTTGGCCATGACTTTCATGTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGCTTTTAGTCACAACAGATACTCTTGGCCATGACTTTCATGTCTT  400

seq1  CCAAATCCTGACTCATCCTTGGTCATCATCACAGTGTGCTGTCCATCATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATCCTGACTCATCCTTGGTCATCATCACAGTGTGCTGTCCATCATC  450

seq1  TGTACACACTTCACAGGGGAGAGACCGAGGCCAAAGTAAGTGTGCGCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACACACTTCACAGGGGAGAGACCGAGGCCAAAGTAAGTGTGCGCTCT  500

seq1  CCCTGAAGGGATTGATTTCTTGGTGCAGTATGGCATTTAAGGTAATTGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAAGGGATTGATTTCTTGGTGCAGTATGGCATTTAAGGTAATTGGA  550

seq1  GATTCATACCAATTTGGAGATTAGTATTTATGAGAAAACAATATTCTCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCATACCAATTTGGAGATTAGTATTTATGAGAAAACAATATTCTCTG  600

seq1  TTTTAGAGTAAGTTCTAGTAAATTGTGGAAAGATACCTAGTCTACCTAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGAGTAAGTTCTAGTAAATTGTGGAAAGATACCTAGTCTACCTAAT  650

seq1  GATTCATAGTGAAAAAACTCTACCTCATTGTTATTGAGGACTAGAGAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCATAGTGAAAAAACTCTACCTCATTGTTATTGAGGACTAGAGAAAT  700

seq1  GGTTCTTGCTGTTCTTCAGTGGACCTATGTTCAAATCCTAGAACCTACAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTTGCTGTTCTTCAGTGGACCTATGTTCAAATCCTAGAACCTACAC  750

seq1  CCAGCAGCTCGCAACCTCCTGCAGCCGCAGGAGAAGATCAAGGAGAGCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAGCTCGCAACCTCCTGCAGCCGCAGGAGAAGATCAAGGAGAGCCA  800

seq1  GTGTTCTCTTTTACTGTCTGTAGGCACCTGCACACACTCGTGTGACACTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCTCTTTTACTGTCTGTAGGCACCTGCACACACTCGTGTGACACTC  850

seq1  ATAAACATCCACACAGTTAAACAATAAAGTTATCTTTTTAAAAATGCTGA  900
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ATAAACATCCACACAGTTAAACAATAAAGTTATCTTTTT-AAAATGCTGA  899

seq1  CATGTAAGTAGATCAGCCTGACCTTATTCTTTATCCTGTCTCCCTTTTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAAGTAGATCAGCCTGACCTTATTCTTTATCCTGTCTCCCTTTTTT  949

seq1  TTGCTCCAAAGGAAACCCTGCTGCCAGCTGATGTCTGTTTCTGAGGGCCT  1000
      ||||| ||||||||||||||||||||||||||||||| ||||||||||||
seq2  TTGCT-CAAAGGAAACCCTGCTGCCAGCTGATGTCTG-TTCTGAGGGCCT  997

seq1  TTTTGCTAGGCACTTTGTGTTTTTTAAGCTTTTTTATGTAAATTGGCCAG  1050
      |||||||| |||||||||||||||| ||| |||| |||| ||||||||||
seq2  TTTTGCTA-GCACTTTGTGTTTTTT-AGCCTTTTAATGT-AATTGGCCAG  1044

seq1  TATAGTAGATACATACATATTTTCTTTTAAGAGAGTGTTTTCAG-TTGTA  1099
      ||||||||| ||||  ||||||||||| | |||| || |||||| |||||
seq2  TATAGTAGA-ACAT--ATATTTTCTTTAAGGAGA-TG-TTTCAGTTTGTA  1089

seq1  TTTTGAGACAGGGTCTCAT  1118
       |||||||   ||||||||
seq2  -TTTGAGAACAGGTCTCAT  1107

seq1: chr11_85475260_85476484
seq2: B6Ng01-041B18.g_68_1280 (reverse)

seq1  AGAAAAAGCAGTGCTGTAGAGGCAAGAGTTGTATCACCAAAAGCCCAATA  50
      ||||||  | ||||||||||||||||   ||||||     ||||  ||||
seq2  AGAAAACAC-GTGCTGTAGAGGCAAGGCGTGTATC----CAAGCATAATA  45

seq1  AAGAACTATTGAGTTGGCTTCCAAGGG-CATTGGTATGGTCAGGGTTGAG  99
       |    | ||||||||  | ||||||| | ||||||| |||| ||| |||
seq2  GA----TCTTGAGTTGCTTCCCAAGGGACTTTGGTAT-GTCACGGTGGAG  90

seq1  CCTTCTCTATAAGGCA-GCAGTCGCTCCCTGAAGTTTTCTCTTTTTGAGT  148
      || ||||||| ||||| |||||| |||||||||| |||||| ||||||||
seq2  CC-TCTCTAT-AGGCAGGCAGTCCCTCCCTGAAG-TTTCTCCTTTTGAGT  137

seq1  ACAGGCTAACAAGCTAATGGTTGGAGTAGTGATCCATATCGTACCATGTT  198
      |||| || |||||||||  | |||||||||||||||||||||||||||| 
seq2  ACAGCCT-ACAAGCTAAATGGTGGAGTAGTGATCCATATCGTACCATGTC  186

seq1  CTTCTCTTCTGTGACCACGCTGTGACCTCGAAAAACAAAAGTTAGGGAAC  248
      ||  ||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CTCTTCTTCTGTGACCACGCTGTGACCTCGAAAAACAAAAG-TAGGGAAC  235

seq1  GGAAGTAACTAACTGACAATTACAGTGGCTGATACACTCCAGTTTAAATA  298
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGT-ACTAACTGACAATTACAGTGGCTGATACACTCCAGTTTAAATA  284

seq1  G-AAGTGTCCTCGGTTAAAATATGGTTCATTCATCGGTCAAACTGTCCTT  347
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTGTCCTCGGTTAAAATATGGTTCATTCATCGGTCAAACTGTCCTT  334

seq1  ATTTCCTTTAATTGAATTAAGATGGACAAATGAGAGATGTGTGCAAGGCA  397
      |||||| |||| ||||||||||||||||||||||||||||||||||||||
seq2  ATTTCC-TTAAATGAATTAAGATGGACAAATGAGAGATGTGTGCAAGGCA  383

seq1  AGG-AAAAAAGTCCTTTCACAAATCACTGTTATCCTCCCTCTGAGTGTAA  446
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAAAAAGTCCTTTCACAAATCACTGTTATCCTCCCTCTGAGTGTAA  433

seq1  AACGAATCAATT-AAAAGCATGTCACAGCATCTTTGACTCTTGAGAAGTT  495
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AACGAATCAATTAAAAAGCATGTCACAGCATCTTTGACTCTTGAGAAGTT  483

seq1  TTAGCACAGAAGTATTTGTAAAAAAAAAAAAAATTATATGCCTAGATGAA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCACAGAAGTATTTGTAAAAAAAAAAAAAATTATATGCCTAGATGAA  533

seq1  AAATTACTTACCTTTTACAGTTAAACACAATTTAGTATCATCTGTTTGAA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTACTTACCTTTTACAGTTAAACACAATTTAGTATCATCTGTTTGAA  583

seq1  TTGTGGTTAGTTTATATTCTGTGTTTCCATTTGACTACAAGTATTAGCCT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGTTAGTTTATATTCTGTGTTTCCATTTGACTACAAGTATTAGCCT  633

seq1  TGTGCCAAACAAATTCCCTTGATTTTTCCATCTCGTCTTCAAGTTGAATA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCAAACAAATTCCCTTGATTTTTCCATCTCGTCTTCAAGTTGAATA  683

seq1  GCAAATAGCCTATTTCACAGATGTACAGTTTGCTTCTCTATTGTCTTTTC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATAGCCTATTTCACAGATGTACAGTTTGCTTCTCTATTGTCTTTTC  733

seq1  CTAAATAGTATTTCTTGATGAGAGATGTGATAGGAAGACAGAACATGTGT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATAGTATTTCTTGATGAGAGATGTGATAGGAAGACAGAACATGTGT  783

seq1  TTGTGCATGTGCACACCTTAACCCAGATACTTTGAGAGACAGCCTTTTTT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCATGTGCACACCTTAACCCAGATACTTTGAGAGACAGCCTTTTTT  833

seq1  CTTTTTTGTGTGTTATGCAATGTAGGTTATTTATGAAGCCATACACATTG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTGTGTGTTATGCAATGTAGGTTATTTATGAAGCCATACACATTG  883

seq1  TATACGTGGGTTTTGTTTTAAGGTGTATGTTATTTGAAATACCTGCCTGT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACGTGGGTTTTGTTTTAAGGTGTATGTTATTTGAAATACCTGCCTGT  933

seq1  CCCTGTACCTTCACTTTGTTTTTCTGTGTATGCACACAGCTTTACCCTGT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTACCTTCACTTTGTTTTTCTGTGTATGCACACAGCTTTACCCTGT  983

seq1  GTTGCCCAGAGCCAGCTCTGTTTATACCTTTTCCTATGTATACGTGGTTT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCCCAGAGCCAGCTCTGTTTATACCTTTTCCTATGTATACGTGGTTT  1033

seq1  TTCCTGCTGTTTAAATTCGGTCATAGATATGCTCATAATTCGTTCTATTT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGCTGTTTAAATTCGGTCATAGATATGCTCATAATTCGTTCTATTT  1083

seq1  GTTGCTCTGAATTTTTTCCAGAAGTGTTTATGTGGAATACATTTGGCTGG  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTCTGAATTTTTTCCAGAAGTGTTTATGTGGAATACATTTGGCTGG  1133

seq1  GGTCAGGGTGAGTGAAACAAGTCTTACTTGTTCAAGCCTTTGGAAGTTTC  1195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGGGTGAGTGAAACAAGTCTTACTTGTTCAAGCCTTTGGAAGTTTC  1183

seq1  TAAGTGCTTTTGCTTTCTACATGTGAATTC  1225
      ||||||||||||||||||||||||||||||
seq2  TAAGTGCTTTTGCTTTCTACATGTGAATTC  1213