BAC Information

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BAC

Clone NameB6Ng01-041F20
Chromosome11 (Build37)
Map Location 48,411,935 - 48,412,840
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039647, LOC192895, Hn1l-ps2
Downstream geneLOC667163, LOC432554, Gnb2l1, Trim41, LOC100039945, Trim7, Irgm, EG432555, OTTMUSG00000005523, Psme2b-ps, LOC667214, Tgtp, LOC667219, 9930111J21Rik, Olfr56, LOC100039796, Ifi47, Olfr1396, Olfr1395, Olfr1394, Btnl9, Zfp62, Mgat1, Olfr1393, Olfr1392, Olfr10, Olfr1391, Olfr1390, LOC667286, Olfr1389, Olfr1388, Olfr1387, Olfr1386, Olfr1385, Olfr1549-ps1, Olfr1384, Olfr1383, Olfr1382, GA_x5J8B7TT7LR-4113-3651, Olfr1381, Olfr1380
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-041F20.bB6Ng01-041F20.g
ACCDH868049DH868050
length1,249903
definitionDH868049|Mus musculus domesticus DNA, BAC clone: B6Ng01-041F20, 5' end.DH868050|Mus musculus domesticus DNA, BAC clone: B6Ng01-041F20, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggcccatacctaaacatgataaaagcaatctacagcaaacca
gtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaa
atcagggactagacaaggctgcccactttctccctaccttttcaacatag
tacttgaagtattagccagagcaattcgacaacaaaaggagatcaagggg
atacaaattggaaaggaggaagtcaaaatatcactttttgcagatgatat
gatagtatatataagtgaccctaaaaattccaccagagaactcctaaacc
tgataaacagcttcagtgaagtagctggatataaaattaactcaaacaag
tcaatggcctttctctacacaaagaataaacaggctgagaaagaaattag
ggaaacaacacccttctcaatagtcacaaataatataaaatatctcggcg
tgactctaactaaggaagtgaaagatctgtatgataaaaacttcaagtct
ctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatg
ctcatggattggcaggatcaatatagtaaaaatggctatcttgccaaaag
caatctacagattcaatgcaatccccatcaaaattccaactcaattcttc
aaggaattagaaggagcaatttgcaaattcatctggaataacaaaaaacc
taggatagcaaaaactcttctcaaggataaaagaacctctggtggaatca
ccatgcctgacctaaagctttactacagagcaattgtggtaaaaaactgc
atggtactggtatagagacagacaagtagaccaatggaatagaattgaag
acccagaaatgaacccacacacctatggtcacttgatctttcgacaggga
gctaaaaccatccagtggaagaaagacagcattttcacattggtgcttgc
acaactgttgttatcatgtagaagaatgcaaatcgatcatacttatctct
tgtactaaggtcaaatctaactggatcaagacttcaataaaaccagagac
actgaaactataagggagaaagtggggaatgccttgaagtactgccacgg
gaaaattctggaatgaaacagcaatgctggctgtagaatctggatgacaa
atggaactaggaattcagttcgcaggcagacccgccatagataagaccca
catgggaaagactttccattctaatgaaggggacaatacacactaaaga
gaattcaatctgttatgtgcaagccagcttcctgaaagccaagacccact
tgggaggccatgaatccatcaatttgagatcagtcttacagggtgttgga
tttagtattcaggaaactaagaatttctgattccattatgtattctcagc
tctagtgtccaacactcttttgtgaacttggaaagcagcctgtcaaagac
agatttgttactgtctttgatcttgagttacaaacaatgtgcattgctta
tgataatttactggcatgtgccttttttattgagccaagaagctgccttt
ctctaacacccgcctataaggtttacctttgaccttgagagctacatgga
agaaatctcattctgatatttgttcttcttcgaaattttgtctcttattt
gttagctatcttgtatatttgcctgtttgtcccaatatcattattttggg
tatcttccttcttttcctcttctttcatttaaaaagttttacatgtaaga
atgttttacctgtatgcagcagtgcaccaatgcatgcttggtgccctgaa
gagactagaacagggtgtcagacgcccctgggactgaagttacaggtgat
tgggatctgctatagaggtgctgggaaatgaattcagttctcttggcaga
gcagtcagtgctcttaacctttaagcaatctcttcagccctgggtagctt
cctcttaaagcttttctatataataatattgttcagttttataccatgag
acaaatgattgggctttataaatggcttacccttggaagtagccatcaac
aagttcaattgcttgtcttaagagggatctaagcctcttggtattttggg
tcagcattcctctttgggggttgactatagagccataagaaagcttatgt
att
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_48411935_48412840
seq2: B6Ng01-041F20.g_71_973 (reverse)

seq1  AATACATATGCTTTCTTTATGGCTCTATAGTCAACACCCCAAAGAGGATT  50
      |||||||| |||||| ||||||||||||||||||| |||||||||||| |
seq2  AATACATAAGCTTTC-TTATGGCTCTATAGTCAAC-CCCCAAAGAGGAAT  48

seq1  GCTGA-CCAAAATACCAAGAGGCTTAGAATCCCTCCTAAGACAAGCAATT  99
      ||||| ||||||||||||||||||||| ||||||| ||||||||||||||
seq2  GCTGACCCAAAATACCAAGAGGCTTAG-ATCCCTCTTAAGACAAGCAATT  97

seq1  GAACTTGTTGATGGCTACTTCCAAGGGTAAGCCATTTATAAAGCCCAATC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTGTTGATGGCTACTTCCAAGGGTAAGCCATTTATAAAGCCCAATC  147

seq1  ATTTTGTCTCATGGTATAAAACTGAACAATATTATTATATAGAAAAGCTT  199
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  A-TTTGTCTCATGGTATAAAACTGAACAATATTATTATATAGAAAAGCTT  196

seq1  TAAGAGGAAGCTACCCAGGGCTGAAGAGATTGCTTAAAGGTTAAGAGCAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGGAAGCTACCCAGGGCTGAAGAGATTGCTTAAAGGTTAAGAGCAC  246

seq1  TGACTGCTCTGCCAAGAGAACTGAATTCATTTCCCAGCACCTCTATAGCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGCTCTGCCAAGAGAACTGAATTCATTTCCCAGCACCTCTATAGCA  296

seq1  GATCCCAATCACCTGTAACTTCAGTCCCAGGGGCGTCTGACACCCTGTTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCCAATCACCTGTAACTTCAGTCCCAGGGGCGTCTGACACCCTGTTC  346

seq1  TAGTCTCTTCAGGGCACCAAGCATGCATTGGTGCACTGCTGCATACAGGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTCTTCAGGGCACCAAGCATGCATTGGTGCACTGCTGCATACAGGT  396

seq1  AAAACATTCTTACATGTAAAACTTTTTAAATGAAAGAAGAGGAAAAGAAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATTCTTACATGTAAAACTTTTTAAATGAAAGAAGAGGAAAAGAAG  446

seq1  GAAGATACCCAAAATAATGATATTGGGACAAACAGGCAAATATACAAGAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATACCCAAAATAATGATATTGGGACAAACAGGCAAATATACAAGAT  496

seq1  AGCTAACAAATAAGAGACAAAATTTCGAAGAAGAACAAATATCAGAATGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAACAAATAAGAGACAAAATTTCGAAGAAGAACAAATATCAGAATGA  546

seq1  GATTTCTTCCATGTAGCTCTCAAGGTCAAAGGTAAACCTTATAGGCGGGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCTTCCATGTAGCTCTCAAGGTCAAAGGTAAACCTTATAGGCGGGT  596

seq1  GTTAGAGAAAGGCAGCTTCTTGGCTCAATAAAAAAGGCACATGCCAGTAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGAGAAAGGCAGCTTCTTGGCTCAATAAAAAAGGCACATGCCAGTAA  646

seq1  ATTATCATAAGCAATGCACATTGTTTGTAACTCAAGATCAAAGACAGTAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCATAAGCAATGCACATTGTTTGTAACTCAAGATCAAAGACAGTAA  696

seq1  CAAATCTGTCTTTGACAGGCTGCTTTCCAAGTTCACAAAAGAGTGTTGGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCTGTCTTTGACAGGCTGCTTTCCAAGTTCACAAAAGAGTGTTGGA  746

seq1  CACTAGAGCTGAGAATACATAATGGAATCAGAAATTCTTAGTTTCCTGAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGAGCTGAGAATACATAATGGAATCAGAAATTCTTAGTTTCCTGAA  796

seq1  TACTAAATCCAACACCCTGTAAGACTGATCTCAAATTGATGGATTCATGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAAATCCAACACCCTGTAAGACTGATCTCAAATTGATGGATTCATGG  846

seq1  CCTCCCAAGTGGGTCTTGGCTTTCAGGAAGCTGGCTTGCACATAACAGAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCAAGTGGGTCTTGGCTTTCAGGAAGCTGGCTTGCACATAACAGAT  896

seq1  TGAATTC  906
      |||||||
seq2  TGAATTC  903