BAC Information

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BAC

Clone NameB6Ng01-041K20
Chromosome11 (Build37)
Map Location 36,733,821 - 36,876,199
singlet/doubletdoublet
Overlap geneOdz2
Upstream geneWwc1, LOC636532
Downstream geneLOC100039148
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-041K20.bB6Ng01-041K20.g
ACCDH868271DH868272
length1,116955
definitionDH868271|Mus musculus domesticus DNA, BAC clone: B6Ng01-041K20, 5' end.DH868272|Mus musculus domesticus DNA, BAC clone: B6Ng01-041K20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,733,821 - 36,734,943)(36,875,266 - 36,876,199)
sequence
gaattccattagttgcctcaagcccatatcacttgccacatggtatctta
gggccaacactatctccttatatgaaactctatagtaaaattatcactta
cttcttttggttggatttaacagtcagagattagacagccttcccatttc
gttcatttattcattccttcacttggtaaatattcatgaagtacctattg
tatgctaggccttgttctaccgggttcaaagagtattgtaataagcaaat
gagataattacccctatgaagcttgcatttgtgatgtacataaacaagga
aataagcagagagatcatgaagcatgaaacacaaggaaggggaacaggag
atgaagggctccaaggctctgtggagctttgtatcttgcagagtacatag
ctgatatctaaacagagactggacagaagttgctaaaaatcatgatccaa
acaagcaagagcaatgccaaatggaggtttgagatagaagacacacagca
tggattctgacaactgttggtactgttgttctttaatttttacagtattt
ttttcatagaatacagcatttttatttaatttatgaattgagttgagtca
agatgaaaaacacacgataataaatatttaacagaaactaatgcaaaatg
ttttacatgccagataagatgctcccaacacctcacttcttattaaacag
ccaaagaaataacaatattattcaatctgaaacgtgtctacagataccat
acagtggaataacttaacgatgaacacgacagaaaaggcccagacagaca
ctgtggaaaccagtaattccttgacaatgctgaaagtgcttctcgtcgta
agtttgtggtttagaaatttactgtatgcagacgtggttgtgaatttaac
atactctcgaataccttaaaactaacttcactgataagggctgccagtgc
acaaatgattagctaagccagcagagatgggcctagttggtcatcgatgg
gagaggaggcccttggtctgtggaatatgaaaaaaaaatgtagcttctat
aatgccaaagtagagtcaatcttattgtttagaaaaatctggaaaatgaa
aacttataggccgtgg
gaattcaaagaataatttagaaacatgaaagaaagaaaggcagttgatcc
agaagtatctctttaagttcatctctgctagtgatgtccctcttgtgcat
tccctttggaaagtagggggcatcagaaattggcagagggttaacagtac
atatgcattcatagagcacatgtgaaataaagccaggtgagtggtgctga
acttcttatatcctcttttctagtaagtggttccctgtgctctcttctgt
aataaccactagccctgtcactcctgagtgtggatgtaaatagatatagc
acaatactttaattttatggcttttacatgtctggttagtaggcatatga
tgtgaagggacaaggaggttttgtctagttgctaaggaataaaaataaca
tgtgcctttattactttgctagcagtctatttatatatttctggagaatg
tgacttgtaaagaaaaatatacatatattttggacatacctgagatttct
caattaaaattactgaaaacctctgctttggtaatgtaggcattatttat
ttatttatttatttttgtacccatgttccagtaaaacggcaggcttggta
catggcgacatcaggtaatggctattcctacacctccaattttggcctta
ctttggattgcatacaggatttctaggaattgaatctcattttaaccatg
taggttaggggagaaaaggtgcatgttttcatggctgtccctaccggtgg
tcaatttgtagtaaaataggttatgaaatctctaaaatcctcttaccttt
gattgattttcactattttcactatagcttactatctcaatctttaagtc
agatgggagccctttgctagtgcatgcaaatcgtccactcaatgccagag
ttaggccactacattgttggtgaatgtgcagtttgtctataaaactttat
gggta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_36733821_36734943
seq2: B6Ng01-041K20.b_44_1159

seq1  GAATTCCATTAGTTGCCTCAAGCCCATATCACTTGCCACATGGTATCTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTAGTTGCCTCAAGCCCATATCACTTGCCACATGGTATCTTA  50

seq1  GGGCCAACACTATCTCCTTATATGAAACTCTATAGTAAAATTATCACTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCAACACTATCTCCTTATATGAAACTCTATAGTAAAATTATCACTTA  100

seq1  CTTCTTTTGGTTGGATTTAACAGTCAGAGATTAGACAGCCTTCCCATTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTTGGTTGGATTTAACAGTCAGAGATTAGACAGCCTTCCCATTTC  150

seq1  GTTCATTTATTCATTCCTTCACTTGGTAAATATTCATGAAGTACCTATTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATTTATTCATTCCTTCACTTGGTAAATATTCATGAAGTACCTATTG  200

seq1  TATGCTAGGCCTTGTTCTACCGGGTTCAAAGAGTATTGTAATAAGCAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTAGGCCTTGTTCTACCGGGTTCAAAGAGTATTGTAATAAGCAAAT  250

seq1  GAGATAATTACCCCTATGAAGCTTGCATTTGTGATGTACATAAACAAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATAATTACCCCTATGAAGCTTGCATTTGTGATGTACATAAACAAGGA  300

seq1  AATAAGCAGAGAGATCATGAAGCATGAAACACAAGGAAGGGGAACAGGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGCAGAGAGATCATGAAGCATGAAACACAAGGAAGGGGAACAGGAG  350

seq1  ATGAAGGGCTCCAAGGCTCTGTGGAGCTTTGTATCTTGCAGAGTACATAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGGGCTCCAAGGCTCTGTGGAGCTTTGTATCTTGCAGAGTACATAG  400

seq1  CTGATATCTAAACAGAGACTGGACAGAAGTTGCTAAAAATCATGATCCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATATCTAAACAGAGACTGGACAGAAGTTGCTAAAAATCATGATCCAA  450

seq1  ACAAGCAAGAGCAATGCCAAATGGAGGTTTGAGATAGAAGACACACAGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCAAGAGCAATGCCAAATGGAGGTTTGAGATAGAAGACACACAGCA  500

seq1  TGGATTCTGACAACTGTTGGTACTGTTGTTCTTTAATTTTTACAGTATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTCTGACAACTGTTGGTACTGTTGTTCTTTAATTTTTACAGTATTT  550

seq1  TTTTCATAGAATACAGCATTTTTATTTAATTTATGAATTGAGTTGAGTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATAGAATACAGCATTTTTATTTAATTTATGAATTGAGTTGAGTCA  600

seq1  AGATGAAAAACACACGATAATAAATATTTAACAGAAACTAATGCAAAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAAAAACACACGATAATAAATATTTAACAGAAACTAATGCAAAATG  650

seq1  TTTTACATGCCAGATAAGATGCTCCCAACACCTCACTTCTTATTAAACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACATGCCAGATAAGATGCTCCCAACACCTCACTTCTTATTAAACAG  700

seq1  CCAAAGAAATAACAATATTATTCAATCTGAAACGTGTCTACAGATACCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGAAATAACAATATTATTCAATCTGAAACGTGTCTACAGATACCAT  750

seq1  ACAGTGGAATAACTTAACGATGAACACGACAGAAAAGGCCCAGACAGACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGGAATAACTTAACGATGAACACGACAGAAAAGGCCCAGACAGACA  800

seq1  CTGTGGAAACCAGTAATTCCTTGACAATGCTGAAAGTGCTTCTCGTCGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGAAACCAGTAATTCCTTGACAATGCTGAAAGTGCTTCTCGTCGTA  850

seq1  AGTTTGTGGTTTAGAAATTTACTGTATGCAGACGTGGTTGTGAATTTAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGTGGTTTAGAAATTTACTGTATGCAGACGTGGTTGTGAATTTAAC  900

seq1  ATACTCTCGAATACCTTAAAACTAACTTCACTGATAAGGGCTGCCAGTGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCTCGAATACCTTAAAACTAACTTCACTGATAAGGGCTGCCAGTGC  950

seq1  ACAAATGATTAGCTAAGCCAGCAGAGAATGGCCTAGTTGGTCATCGATGG  1000
      |||||||||||||||||||||||||||  |||||||||||||||||||||
seq2  ACAAATGATTAGCTAAGCCAGCAGAGATGGGCCTAGTTGGTCATCGATGG  1000

seq1  GAGAAGAGGCCCTTGGTCCTGT-GAATATGAAAAAAAAATTGTAGCTTCT  1049
      |||| |||||||||||| |||| |||||||||||||||| ||||||||||
seq2  GAGAGGAGGCCCTTGGT-CTGTGGAATATGAAAAAAAAA-TGTAGCTTCT  1048

seq1  ATAATTGGCATAGGTAGAGTCAATCTTTATGTTTAGAAAAATCTGGAAAA  1099
      |||||  ||  | ||||||||||||||  |||||||||||||||||||||
seq2  ATAAT--GCCAAAGTAGAGTCAATCTTATTGTTTAGAAAAATCTGGAAAA  1096

seq1  TGAAAATACTTATTAGGCCTGTGG  1123
      |||||  ||||| |||||| ||||
seq2  TGAAA--ACTTA-TAGGCC-GTGG  1116

seq1: chr11_36875266_36876199
seq2: B6Ng01-041K20.g_70_1002 (reverse)

seq1  AACTGCCCATTCACCAGCAATGTGATGGCCTAACCTCTGGCATTTGAGTG  50
      |||||| ||||||||| ||||||  |||||||| |||||||| |||||||
seq2  AACTGCACATTCACCAACAATGTAGTGGCCTAA-CTCTGGCA-TTGAGTG  48

seq1  GACGATTTGCATGCACTAGCAAA-GGCTACCATCTGACTTGAAGATTGAG  99
      ||||||||||||||||||||||| |||| ||||||||||| |||||||||
seq2  GACGATTTGCATGCACTAGCAAAGGGCTCCCATCTGACTTAAAGATTGAG  98

seq1  ATAGTAAGCTATTAGTGAAAATAGTGAAAATCAATCAAAGGTAAGAGGAC  149
      ||||||||||| ||||||||||||||||||||||||||||||||||||| 
seq2  ATAGTAAGCTA-TAGTGAAAATAGTGAAAATCAATCAAAGGTAAGAGGA-  146

seq1  TTTTAGAGATTTCATAACCTATTTTACTACAAATTGACCACCGGTAGGGA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGAGATTTCATAACCTATTTTACTACAAATTGACCACCGGTAGGGA  196

seq1  CAGCCATGAAAACATGCACCTTTTCT-CCCTAACCTACATGGTTAAAATG  248
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CAGCCATGAAAACATGCACCTTTTCTCCCCTAACCTACATGGTTAAAATG  246

seq1  AGATTCAATTCCTAGAAATCCTGTATGCAATCCAAAGTAAGGCC-AAATT  297
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AGATTCAATTCCTAGAAATCCTGTATGCAATCCAAAGTAAGGCCAAAATT  296

seq1  GGAGGTGTAGGAATAGCCATTACCTGATGTCGCCATGTACCAAGCCTGCC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTGTAGGAATAGCCATTACCTGATGTCGCCATGTACCAAGCCTGCC  346

seq1  GTTTTACTGGAACATGGGTACAAAAATAAATAAATAAATAAATAATGCCT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTACTGGAACATGGGTACAAAAATAAATAAATAAATAAATAATGCCT  396

seq1  ACATTACCAAAGCAGAGGTTTTCAGTAATTTTAATTGAGAAATCTCAGGT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTACCAAAGCAGAGGTTTTCAGTAATTTTAATTGAGAAATCTCAGGT  446

seq1  ATGTCCAAAATATATGTATATTTTTCTTTACAAGTCACATTCTCCAGAAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCAAAATATATGTATATTTTTCTTTACAAGTCACATTCTCCAGAAA  496

seq1  TATATAAATAGACTGCTAGCAAAGTAATAAAGGCACATGTTATTTTTATT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAAATAGACTGCTAGCAAAGTAATAAAGGCACATGTTATTTTTATT  546

seq1  CCTTAGCAACTAGACAAAACCTCCTTGTCCCTTCACATCATATGCCTACT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGCAACTAGACAAAACCTCCTTGTCCCTTCACATCATATGCCTACT  596

seq1  AACCAGACATGTAAAAGCCATAAAATTAAAGTATTGTGCTATATCTATTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGACATGTAAAAGCCATAAAATTAAAGTATTGTGCTATATCTATTT  646

seq1  ACATCCACACTCAGGAGTGACAGGGCTAGTGGTTATTACAGAAGAGAGCA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCACACTCAGGAGTGACAGGGCTAGTGGTTATTACAGAAGAGAGCA  696

seq1  CAGGGAACCACTTACTAGAAAAGAGGATATAAGAAGTTCAGCACCACTCA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAACCACTTACTAGAAAAGAGGATATAAGAAGTTCAGCACCACTCA  746

seq1  CCTGGCTTTATTTCACATGTGCTCTATGAATGCATATGTACTGTTAACCC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCTTTATTTCACATGTGCTCTATGAATGCATATGTACTGTTAACCC  796

seq1  TCTGCCAATTTCTGATGCCCCCTACTTTCCAAAGGGAATGCACAAGAGGG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCAATTTCTGATGCCCCCTACTTTCCAAAGGGAATGCACAAGAGGG  846

seq1  ACATCACTAGCAGAGATGAACTTAAAGAGATACTTCTGGATCAACTGCCT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCACTAGCAGAGATGAACTTAAAGAGATACTTCTGGATCAACTGCCT  896

seq1  TTCTTTCTTTCATGTTTCTAAATTATTCTTTGAATTC  934
      |||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTTTCATGTTTCTAAATTATTCTTTGAATTC  933