BAC Information

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BAC

Clone NameB6Ng01-041O15
Chromosome11 (Build37)
Map Location 105,934,205 - 106,062,642
singlet/doubletdoublet
Overlap geneCcdc44, Map3k3, Limd2, 2610019A05Rik, 2610204L23Rik
Upstream gene4921510J17Rik, Mettl2, LOC666771, Tlk2, 1700052K11Rik, Mrc2, Rnf190, EG666807, Tanc2, LOC667737, Cyb561, Ace, EG217246, Kcnh6, Wdr68
Downstream geneDdx42, Ftsj3, Psmc5, Smarcd2, Tcam1, Gh, Cd79b, Scn4a, 2310007L24Rik, Icam2, Ern1, LOC100041277, Tex2, Pecam1, Gm885, Polg2, Ddx5, Ccdc45, Smurf2, LOC666873, Kpna2, 1810010H24Rik, Bptf, LOC100042899, Nol11, LOC671692
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-041O15.bB6Ng01-041O15.g
ACCDH868437DH868438
length1,011707
definitionDH868437|Mus musculus domesticus DNA, BAC clone: B6Ng01-041O15, 5' end.DH868438|Mus musculus domesticus DNA, BAC clone: B6Ng01-041O15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,934,205 - 105,935,216)(106,061,934 - 106,062,642)
sequence
gaattcacaaactgcacagtgttactaagtgaacaccagaggatagggcc
tattgtgagttggtaagaagaattctgcgcattggaaactatgaacttaa
aggccaatgatgatatagtacaggttgctccactcaggattttgcaaact
tctgtctgggttgtggcattacttcctggcttctcacctcctcacttctt
ttatctctagttcatttgtgatgcttcttcactacatcaagtgaggaaaa
aactggactcgctgggcctgtgtcctgtgtcctgttcaatggagttcatc
cctcactccaaggtgcagctggctgagccggagctggagcaggctgctca
cctcatccaggcgcttaacaactatgaggatgtgattcacgtttatgaca
atattgaataagcggcctcgactagacttggctccggctctttcctaggc
cgcacaagcttctgcagcaatctcagagactgaaacagctgagagcctat
tagagacctgctgcaatggctgtcagccttgggaaagggggactcttagc
tctgttggtatcaccgggccatctggaatgcaaggtgagactggccagcc
ggtctgactctgatcccaggtgactggctcttgtgaagagtcttaagtgt
cctgtggtaccgtagagtggaaatgatctttcaataaataacagtagtga
cttttggatgcttttgttgctggtatgactcttgaggtgtcctgattttg
tgtccagtttttgaacctctggactaactgacattcaagcccacatgctt
acttctctactttcatactaagattgtctttttccttttctttctgttgt
ggaatagagacgtggctgttcttgtggttgggtgctggtataacgaccta
gcctttctcactgttcatggcagctagtgctcttgacaccttacttacag
ggatgggctttctagggagaggcagttcagtggtgctaatgtcctgctcc
aagatgtgaaa
gaattccaggacagctaggactatacaaagagagaccctatttcaaactt
ctagcactgccactctcaaaaaaaaaggattttgagtaataatagggtga
gtggaggtgcccggtgtggagttcagatgcatcagatcccttggagctgg
aattaaaggcagctgtgaaccacctgacagatgcttggaacagagcttgg
gtcttctgcagaagcatcctgaggtctaaccaccaaaccggttccccagc
ccctgggttttagtgtgtccttagagcttaatttggaccctcttcccctc
cctgttacacaggaagctgctttgaggagagaacaaaagaagttggagaa
gaagcaaatgaaaatgaaacaaatcaaagtgaaagccatgtagagctggt
tgcagaggttgtgtccttgctgccgttagctctccgtccaccggagacag
gaaaagcaggagtctgcacctaacagtcacgagtctctgctgactgagag
atctttatctcaccctctcctctcggtttagagttctacagaggttatag
atacaatgaaagggctctttcagttatttccttccagataatcaaattat
tttgattattttataaaaggagcggtatataaagtatgtgtagtttaaat
atatttaaattataatgtgaatcatcagggcgttactttggtgtttgaag
accgatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_105934205_105935216
seq2: B6Ng01-041O15.b_43_1053

seq1  GAATTCACAAACTGCACAGTGTTACTAAGTGAACACCAGAGGATAGGGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAAACTGCACAGTGTTACTAAGTGAACACCAGAGGATAGGGCC  50

seq1  TATTGTGAGTTGGTAAGAAGAATTCTGCGCATTGGAAACTATGAACTTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTGAGTTGGTAAGAAGAATTCTGCGCATTGGAAACTATGAACTTAA  100

seq1  AGGCCAATGATGATATAGTACAGGTTGCTCCACTCAGGATTTTGCAAACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAATGATGATATAGTACAGGTTGCTCCACTCAGGATTTTGCAAACT  150

seq1  TCTGTCTGGGTTGTGGCATTACTTCCTGGCTTCTCACCTCCTCACTTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTGGGTTGTGGCATTACTTCCTGGCTTCTCACCTCCTCACTTCTT  200

seq1  TTATCTCTAGTTCATTTGTGATGCTTCTTCACTACATCAAGTGAGGAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTCTAGTTCATTTGTGATGCTTCTTCACTACATCAAGTGAGGAAAA  250

seq1  AACTGGACTCGCTGGGCCTGTGTCCTGTGTCCTGTTCAATGGAGTTCATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGACTCGCTGGGCCTGTGTCCTGTGTCCTGTTCAATGGAGTTCATC  300

seq1  CCTCACTCCAAGGTGCAGCTGGCTGAGCCGGAGCTGGAGCAGGCTGCTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACTCCAAGGTGCAGCTGGCTGAGCCGGAGCTGGAGCAGGCTGCTCA  350

seq1  CCTCATCCAGGCGCTTAACAACTATGAGGATGTGATTCACGTTTATGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATCCAGGCGCTTAACAACTATGAGGATGTGATTCACGTTTATGACA  400

seq1  ATATTGAATAAGCGGCCTCGACTAGACTTGGCTCCGGCTCTTTCCTAGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGAATAAGCGGCCTCGACTAGACTTGGCTCCGGCTCTTTCCTAGGC  450

seq1  CGCACAAGCTTCTGCAGCAATCTCAGAGACTGAAACAGCTGAGAGCCTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCACAAGCTTCTGCAGCAATCTCAGAGACTGAAACAGCTGAGAGCCTAT  500

seq1  TAGAGACCTGCTGCAATGGCTGTCAGCCTTGGGAAAGGGGGACTCTTAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGACCTGCTGCAATGGCTGTCAGCCTTGGGAAAGGGGGACTCTTAGC  550

seq1  TCTGTTGGTATCACCGGGCCATCTGGAATGCAAGGTGAGACTGGCCAGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTGGTATCACCGGGCCATCTGGAATGCAAGGTGAGACTGGCCAGCC  600

seq1  GGTCTGACTCTGATCCCAGGTGACTGGCTCTTGTGAAGAGTCTTAAGTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGACTCTGATCCCAGGTGACTGGCTCTTGTGAAGAGTCTTAAGTGT  650

seq1  CCTGTGGTACCGTAGAGTGGAAATGATC-TTCAAT-AATAACAGTAGTGA  698
      |||||||||||||||||||||||||||| |||||| ||||||||||||||
seq2  CCTGTGGTACCGTAGAGTGGAAATGATCTTTCAATAAATAACAGTAGTGA  700

seq1  CTTTTGGATGC-TTTGTTGCTGGTATGACTCTTGAGGTGTCCTGA-TTTG  746
      ||||||||||| ||||||||||||||||||||||||||||||||| ||||
seq2  CTTTTGGATGCTTTTGTTGCTGGTATGACTCTTGAGGTGTCCTGATTTTG  750

seq1  TGTCCAGTTTTTGAACCTCTGGACTAACTGACATTCAAGCCCACATGCTT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCAGTTTTTGAACCTCTGGACTAACTGACATTCAAGCCCACATGCTT  800

seq1  ACTTCTCTACTTTCATACTAAGATTGTCTTTTTCCTTTTCTTTCTGTTGT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTCTACTTTCATACTAAGATTGTCTTTTTCCTTTTCTTTCTGTTGT  850

seq1  GGAATAGAGACGTGGCTGTTCTTGTGGTTGGGTGCTGGTATAACGACCTA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATAGAGACGTGGCTGTTCTTGTGGTTGGGTGCTGGTATAACGACCTA  900

seq1  GCC-TTCTCACTTGTTCAT-GCAGCTAGTGTCTCTTGAACACCTTACTTA  944
      ||| ||||||| ||||||| |||||||||| |||||| ||||||||||||
seq2  GCCTTTCTCAC-TGTTCATGGCAGCTAGTG-CTCTTG-ACACCTTACTTA  947

seq1  CAGGGATTGTGCTTTTCTAGGGAGAAGGCAGTTCAGTTGGTGCTTATGTC  994
      |||||| || || ||||||||||| ||||||||||| ||||||| |||||
seq2  CAGGGA-TGGGC-TTTCTAGGGAG-AGGCAGTTCAG-TGGTGCTAATGTC  993

seq1  CTGCTCTAAGATGTGAGA  1012
      |||||| ||||||||| |
seq2  CTGCTCCAAGATGTGAAA  1011

seq1: chr11_106061934_106062642
seq2: B6Ng01-041O15.g_70_776 (reverse)

seq1  GATCGGTCTTCAAACACCAAAGTAACGCACTGATGATTCACATTATAATT  50
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GATCGGTCTTCAAACACCAAAGTAACGCCCTGATGATTCACATTATAATT  50

seq1  TAAATATATTTTAAAACTACACATACTTTATATACCGCTCCTTTTATAAA  100
      |||||||||||  |||||||||||||||||||||||||||||||||||||
seq2  TAAATATATTT--AAACTACACATACTTTATATACCGCTCCTTTTATAAA  98

seq1  ATAATCAAAATAATTTGATTATCTGGAAGGAAATAACTGAAAGAGCCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCAAAATAATTTGATTATCTGGAAGGAAATAACTGAAAGAGCCCTT  148

seq1  TCATTGTATCTATAACCTCTGTAGAACTCTAAACCGAGAGGAGAGGGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGTATCTATAACCTCTGTAGAACTCTAAACCGAGAGGAGAGGGTGA  198

seq1  GATAAAGATCTCTCAGTCAGCAGAGACTCGTGACTGTTAGGTGCAGACTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAGATCTCTCAGTCAGCAGAGACTCGTGACTGTTAGGTGCAGACTC  248

seq1  CTGCTTTTCCTGTCTCCGGTGGACGGAGAGCTAACGGCAGCAAGGACACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTTTCCTGTCTCCGGTGGACGGAGAGCTAACGGCAGCAAGGACACA  298

seq1  ACCTCTGCAACCAGCTCTACATGGCTTTCACTTTGATTTGTTTCATTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTGCAACCAGCTCTACATGGCTTTCACTTTGATTTGTTTCATTTTC  348

seq1  ATTTGCTTCTTCTCCAACTTCTTTTGTTCTCTCCTCAAAGCAGCTTCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCTTCTTCTCCAACTTCTTTTGTTCTCTCCTCAAAGCAGCTTCCTG  398

seq1  TGTAACAGGGAGGGGAAGAGGGTCCAAATTAAGCTCTAAGGACACACTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACAGGGAGGGGAAGAGGGTCCAAATTAAGCTCTAAGGACACACTAA  448

seq1  AACCCAGGGGCTGGGGAACCGGTTTGGTGGTTAGACCTCAGGATGCTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAGGGGCTGGGGAACCGGTTTGGTGGTTAGACCTCAGGATGCTTCT  498

seq1  GCAGAAGACCCAAGCTCTGTTCCAAGCATCTGTCAGGTGGTTCACAGCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAGACCCAAGCTCTGTTCCAAGCATCTGTCAGGTGGTTCACAGCTG  548

seq1  CCTTTAATTCCAGCTCCAAGGGATCTGATGCATCTGAACTCCACACCGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAATTCCAGCTCCAAGGGATCTGATGCATCTGAACTCCACACCGGG  598

seq1  CACCTCCACTCACCCTATTATTACTCAAAATCCTTTTTTTTTGAGAGTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCCACTCACCCTATTATTACTCAAAATCCTTTTTTTTTGAGAGTGG  648

seq1  CAGTGCTAGAAGTTTGAAATAGGGTCTCTCTTTGTATAGTCCTAGCTGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCTAGAAGTTTGAAATAGGGTCTCTCTTTGTATAGTCCTAGCTGTC  698

seq1  CTGGAATTC  709
      |||||||||
seq2  CTGGAATTC  707