BAC Information

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BAC

Clone NameB6Ng01-042A17
Chromosome11 (Build37)3 (Build37)
Map Location 6,857,609 - 6,858,169102,549,796 - 102,551,032
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneYkt6, Camk2b, LOC100042156, Nudcd3, LOC100042173, Npc1l1, LOC100041242, LOC665250, Ddx56, Tmed4, Ogdh, LOC100042227, Zmiz2, Ppia, H2afv, LOC665277, LOC665283, LOC626342, Purb, Myo1g, LOC100041286, Ccm2, LOC665327, AB182283, Tbrg4, Wap, LOC100041311, Ramp3, LOC665314, LOC626419, LOC665339, LOC665343, LOC100041332
Downstream geneAdcy1, LOC100041347, Igfbp1, Igfbp3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-042A17.bB6Ng01-042A17.g
ACCDH868533DH868534
length9041,218
definitionDH868533|Mus musculus domesticus DNA, BAC clone: B6Ng01-042A17, 5' end.DH868534|Mus musculus domesticus DNA, BAC clone: B6Ng01-042A17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(6,857,609 - 6,858,169)(102,549,796 - 102,551,032)
sequence
gaattctttttgtgtagaacatgattttaatattttcaactgttgatatt
caacaaacaaaatagttattttaagatatatttcattgttatgtctccct
tttcgttcatatttattaatttctctgtgccctccggttaatctggctaa
gggtttatctgtcttattgattttctcaaagaaccagctcctggttttgt
tgattctttgtacagttctttttgtttctattttgttgatttcagccccg
agtttcactatttcctgccatctattcctcttgggtgtatttgattcttt
ttgttctagagctttcaggtatgctgtcaagctggtagtgtaagctttct
tcagtttctttttggaggcactcagagctgagttttcctcttagcactgc
tttcattgtgttccataagtttgggtatgatgtgtcttcattttcattga
attctaaaaagcctttaatttctttatttcttccttgaccaagttatcag
tgagtagaacattgttgagcttccatgtatatgtgtgctttctgttgttt
ttgtgaacgcatagatgttcacaattgagaggccttcttggtagattttt
cttttgatgagtataaagtgtcctttcttatcttttttgataacttttgg
ttgaaagttgattttattccatattagaacggctactccagcttgtttct
tgggaccatttgcttgttaaattgttttccagccatttactctctctgag
atagtgtttgtctttgacgttgaggtgagtttcctgtaggcagcaaaatg
ctgggtgttgtttacatatccagtctgttagtctgtgtccttttattggg
gaattgagtacattgatgttaagagattttaaagaaaagtgattgttact
tctt
gaattccatcccagggccagtgaggtgccacagcaggtgaggatgtttgc
tgccaagtctcatgatctgagttcagtcccagggaccacacggtggcagg
agactatagactcctttgtctacacattgtcctttgacgtctgacacgtg
ctgtggtatgtgcatgttctccacccatacaaaatgagcaaaggactata
agaagaaaagtccatttctgcagaagtgatggtgtttttcttaccattct
gctagggacacggcaagcaatacctgccctagaagcagagcggccctcgg
cagtgtccctcgctactgtgattctcactgcccttccgggtctccttgct
gctccttagcatcctctctgaggttctcctgagcatccatctgtggctgc
tcactgtatctggctgccaagcagcattcagctcctgctcactcccatcc
agagagttgagttcctgtctcccctccctcggggcctgaagtaggattcc
catgatgattcaggctaagcagaagccacgagccatggctgcccccacac
tcctgtgatgatgatgtaatgtgctccccaacactggcctctttctcagc
atagcacaaaggtaaggggtggctctttcccctgtgcagttccttctgcc
tcaagctttcccatcccatgaaattctttgctgctccatgaaattcaact
cattcttcaaggcatatatcagaatggggatgaccgccacccaccagtgc
cctgtgccctcccttggtaatgcgcgctccttcccttcggcacacttcct
gcatcttatcgcatgcctcactttaggtgattgtcttccaagtctcccac
atggagcacagtacctggcctggctcggactatggttggttgttactaaa
tgtgcatggaagaagagaaagaagtgaagagagataaagtgggggcagaa
gggaatgaagaggggcactttctcatttcttgctatttcagtttccctgg
agtatagatacagatggctagtacaaactggtcgaaattaagcattgttg
gcatagggactagtgctaacttgagttaagctaaggttaaagaggccctg
gagtgctggggcagcatctctgccgtagggaatggctcagtaactgagaa
cacatggctggaagggctcttcctctggccttcactgaaatggcttatct
aggtgaatttctcacccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_6857609_6858169
seq2: B6Ng01-042A17.b_50_595

seq1  TTTTTTTGTAGAACATCATTTTAATATTTTCAACTGTTAATATTCAACAA  50
      ||||| |||||||||| ||||||||||||||||||||| |||||||||||
seq2  TTTTTGTGTAGAACATGATTTTAATATTTTCAACTGTTGATATTCAACAA  50

seq1  ACAGAATAATTATTTTAAGATATATTTCATTGT--TGTCTCCCTTTTTAT  98
      ||| |||| ||||||||||||||||||||||||  ||||||||||||  |
seq2  ACAAAATAGTTATTTTAAGATATATTTCATTGTTATGTCTCCCTTTTCGT  100

seq1  TTCTGATTTTATTAATTTGTATACTGTCTCTGTGCCCTCTGGTAAGTCTG  148
      |  |   ||||||||||         ||||||||||||| ||| | ||||
seq2  TCAT--ATTTATTAATT---------TCTCTGTGCCCTCCGGTTAATCTG  139

seq1  GCTAAGGGTTTATCTATCTTGTTGATTTTCTCAAAGAACCAGCTCCTGGT  198
      ||||||||||||||| |||| |||||||||||||||||||||||||||||
seq2  GCTAAGGGTTTATCTGTCTTATTGATTTTCTCAAAGAACCAGCTCCTGGT  189

seq1  TTTGTTGATTCTTTGTATAGTTCTTTTTGTTTCTATTTGGTTGATTTCAG  248
      ||||||||||||||||| |||||||||||||||||||| |||||||||||
seq2  TTTGTTGATTCTTTGTACAGTTCTTTTTGTTTCTATTTTGTTGATTTCAG  239

seq1  CCCTGAGTTTCATTATTTCCTGTCATCTATTCCTCTTGGGTGAATTTGCT  298
      ||| |||||||| ||||||||| ||||||||||||||||||| ||||| |
seq2  CCCCGAGTTTCACTATTTCCTGCCATCTATTCCTCTTGGGTGTATTTGAT  289

seq1  TCTTTTTGTTCTAAAGCTTTCAGTTGTGCTGTTAAGCTGCTAGTGTAAGC  348
      ||||||||||||| ||||||||| | |||||| |||||| ||||||||||
seq2  TCTTTTTGTTCTAGAGCTTTCAGGTATGCTGTCAAGCTGGTAGTGTAAGC  339

seq1  TCTCTCCAGTTTCTTTTCAGAGGCATTTAGAGCTATTAGTTTTCCTCTTA  398
      | ||| |||||||||||  |||||| | |||||  | |||||||||||||
seq2  TTTCTTCAGTTTCTTTTTGGAGGCACTCAGAGC--TGAGTTTTCCTCTTA  387

seq1  CCACTGCTTTCATTGTGTCCCATAGGTTTTGGTATGATGTGTCTTCATTT  448
       ||||||||||||||||| ||||| |||| ||||||||||||||||||||
seq2  GCACTGCTTTCATTGTGTTCCATAAGTTTGGGTATGATGTGTCTTCATTT  437

seq1  TCATTAAATTTTAAAAAGCCTTTAATTTTTTTTACTTATTTCTTCCTTGA  498
      ||||| |||| ||||||||||||||||| |     |||||||||||||||
seq2  TCATTGAATTCTAAAAAGCCTTTAATTTCT-----TTATTTCTTCCTTGA  482

seq1  TCAAGTTATCATTGAGCAGAGCATTGTTCAACTTCCATGTGTATGTGTGC  548
       |||||||||| |||| ||| ||||||| | ||||||||| |||||||||
seq2  CCAAGTTATCAGTGAGTAGAACATTGTTGAGCTTCCATGTATATGTGTGC  532

seq1  -TTCCATTGTTTTT  561
       |||  ||||||||
seq2  TTTCTGTTGTTTTT  546

seq1: chr3_102549796_102551032
seq2: B6Ng01-042A17.g_64_1281

seq1  GAATTCCATCCCAGGGCCAGTGAGGTGCCACAGCAGGTGAGGATGTTTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCCCAGGGCCAGTGAGGTGCCACAGCAGGTGAGGATGTTTGC  50

seq1  TGCCAAGTCTCATGATCTGAGTTCAGTCCCAGGGACCACACGGTGGCAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAAGTCTCATGATCTGAGTTCAGTCCCAGGGACCACACGGTGGCAGG  100

seq1  AGACTATAGACTCCTTTGTCTACACATTGTCCTTTGACGTCTGACACGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTATAGACTCCTTTGTCTACACATTGTCCTTTGACGTCTGACACGTG  150

seq1  CTGTGGTATGTGCATGTTCTCCACCCATACAAAATGAGCAAAGGACTATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGTATGTGCATGTTCTCCACCCATACAAAATGAGCAAAGGACTATA  200

seq1  AGAAGAAAAGTCCATTTCTGCAGAAGTGATGGTGTTTTTCTTACCATTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAAAAGTCCATTTCTGCAGAAGTGATGGTGTTTTTCTTACCATTCT  250

seq1  GCTAGGGACACGGCAAGCAATACCTGCCCTAGAAGCAGAGCGGCCCTCGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGGGACACGGCAAGCAATACCTGCCCTAGAAGCAGAGCGGCCCTCGG  300

seq1  CAGTGTCCCTCGCTACTGTGATTCTCACTGCCCTTCCGGGTCTCCTTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTCCCTCGCTACTGTGATTCTCACTGCCCTTCCGGGTCTCCTTGCT  350

seq1  GCTCCTTAGCATCCTCTCTGAGGTTCTCCTGAGCATCCATCTGTGGCTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTTAGCATCCTCTCTGAGGTTCTCCTGAGCATCCATCTGTGGCTGC  400

seq1  TCACTGTATCTGGCTGCCAAGCAGCATTCAGCTCCTGCTCACTCCCATCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGTATCTGGCTGCCAAGCAGCATTCAGCTCCTGCTCACTCCCATCC  450

seq1  AGAGAGTTGAGTTCCTGTCTCCCCTCCCTCGGGGCCTGAAGTAGGATTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGTTGAGTTCCTGTCTCCCCTCCCTCGGGGCCTGAAGTAGGATTCC  500

seq1  CATGATGATTCAGGCTAAGCAGAAGCCACGAGCCATGGCTGCCCCCACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATGATTCAGGCTAAGCAGAAGCCACGAGCCATGGCTGCCCCCACAC  550

seq1  TCCTGTGATGATGATGTAATGTGCTCCCCAACACTGGCCTCTTTCTCAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTGATGATGATGTAATGTGCTCCCCAACACTGGCCTCTTTCTCAGC  600

seq1  ATAGCACAAAGGTAAGGGGTGGCTCTTTCCCCTGTGCAGTTCCTTCTGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCACAAAGGTAAGGGGTGGCTCTTTCCCCTGTGCAGTTCCTTCTGCC  650

seq1  TCAAGCTTTCCCATCCCATGAAATTCTTTGCTGCTCCATGAAATTCAACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCTTTCCCATCCCATGAAATTCTTTGCTGCTCCATGAAATTCAACT  700

seq1  CATTCTTCAAGGCATATATCAGAATGGGGATGACCGCCACCCACCAGTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTTCAAGGCATATATCAGAATGGGGATGACCGCCACCCACCAGTGC  750

seq1  CCTGTGCCCTCCCTTGGTAATGCGCGCTCCTTCCCTTCGGCACACTTCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGCCCTCCCTTGGTAATGCGCGCTCCTTCCCTTCGGCACACTTCCT  800

seq1  GCATCTTATCGCATGCCTCACTTTAGGTGATTGTCTTCCAAGTCTCCCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTTATCGCATGCCTCACTTTAGGTGATTGTCTTCCAAGTCTCCCAC  850

seq1  ATGGAGCACAGTACCTGGCCTGGCTCGGACTATGGTTGGTTGTTACTAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGCACAGTACCTGGCCTGGCTCGGACTATGGTTGGTTGTTACTAAA  900

seq1  TGTGCATGGAAGAAGAGAAAGAAGTGAAGAGAGATAAAAGTGGGGGCAAG  950
      ||||||||||||||||||||||||||||||||||| ||||||||||| ||
seq2  TGTGCATGGAAGAAGAGAAAGAAGTGAAGAGAGAT-AAAGTGGGGGC-AG  948

seq1  AAGGGAATGAAGAAGGGGCACTTTCTCATTTCTTGCTTATTTCAGTTTTC  1000
      |||||||||||| ||||||||||||||||||||||| ||||||||||| |
seq2  AAGGGAATGAAG-AGGGGCACTTTCTCATTTCTTGC-TATTTCAGTTTCC  996

seq1  CCTGAGTATAGATACAGAATGGCTAAGTACAAACTGGGTCGAAATTAAAA  1050
      |  |||||||||||||| |||||| |||||||||| ||||||||||  ||
seq2  CTGGAGTATAGATACAG-ATGGCT-AGTACAAACT-GGTCGAAATT--AA  1041

seq1  GCATTG-TGGCATAGGGGACATAGTGCCTAC-TGAGTTAAAGCTTAGGTC  1098
      |||||| ||||||| ||||| ||||||  || |||||| ||||| |||| 
seq2  GCATTGTTGGCATA-GGGAC-TAGTGCTAACTTGAGTT-AAGCTAAGGT-  1087

seq1  TAAAGAGGCCCT-GAGTGCTGGGGCAAGCATCTCCTGCTGTAGGGAATGC  1147
      |||||||||||| |||||||||||| ||||||| |||| |||||||||| 
seq2  TAAAGAGGCCCTGGAGTGCTGGGGC-AGCATCT-CTGCCGTAGGGAATG-  1134

seq1  GCACAGTAACCGAGAACCACATGCCTGGCAGGGGGCTTCCTTCCTCT-GC  1196
      || ||||||| ||||| |||||| |||| |  |||||  |||||||| ||
seq2  GCTCAGTAACTGAGAA-CACATGGCTGGAA--GGGCT--CTTCCTCTGGC  1179

seq1  TCTCACTGGAATGGGGTTAGTTAGTGTGATTTTCTCACCCC  1237
        |||||| ||| || |||  ||| |||| |||||||||||
seq2  CTTCACTGAAAT-GGCTTATCTAG-GTGAATTTCTCACCCC  1218