BAC Information

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BAC

Clone NameB6Ng01-042F19
Chromosome11 (Build37)
Map Location 106,661,049 - 106,796,511
singlet/doubletdoublet
Overlap geneCcdc45, Smurf2
Upstream geneTanc2, Cyb561, Ace, EG217246, Kcnh6, Wdr68, Ccdc44, Map3k3, Limd2, 2610019A05Rik, 2610204L23Rik, Ddx42, Ftsj3, Psmc5, Smarcd2, Tcam1, Gh, Cd79b, Scn4a, 2310007L24Rik, Icam2, Ern1, LOC100041277, Tex2, Pecam1, Gm885, Polg2, Ddx5
Downstream geneLOC666873, Kpna2, 1810010H24Rik, Bptf, LOC100042899, Nol11, LOC671692, Pitpnc1, Psmd12, A830035A12Rik, Helz, Cacng1, Cacng4, Cacng5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-042F19.bB6Ng01-042F19.g
ACCDH868763DH868764
length1,062899
definitionDH868763|Mus musculus domesticus DNA, BAC clone: B6Ng01-042F19, 5' end.DH868764|Mus musculus domesticus DNA, BAC clone: B6Ng01-042F19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,661,049 - 106,662,124)(106,795,611 - 106,796,511)
sequence
gaattccattccaagaacccacagagaaggagagaaagaactccccaaag
ttgtcctctgacctccacacttgggttgtgacactcaagctcctgcacaa
gtatgcctctcccccccaaagtgtgcaaacagggggaaatggtgaaactg
tgctgtgatcacctgcctgccctgctgtgagagccccccttgtctcttct
tctccaagggactcatggcaggtggtggttggcttgctcatgtcattatc
atgttggctcaggacagacagggtcttaacttagcctttatgtttgtctt
tttaaacaggtgaaactgagcagtattctaaagattctcatggagaagaa
gctggggaggacctagaacgtaccgaggaggcgaagtggagaaacgcttc
ttttatgaggtagtgtgcagtgcctgtgaatttcatcagacaagttatgc
ttcccactctgtgagattaagtccagcatactctaatgtccctccaaaag
ctgatgtgaacattttatgcctttctgagctcttgactttcctttcctat
ctctgctttcacaacttttttctttttcttttttttttttttcttttttt
ggtttttcgagacagggtttctctgtatagccctggctatcctggaactc
actttgtagaccaggctggcctcgaactcagaaatccgcctgcctctgcc
tcccaagtgctgggagtaaaggcgtgcgccaccacgcccggctcacaact
tttttcattctagacttttgttgagatggttctgagtatcctggctgcct
tgaattcctgattctcctgcctgtgccttccaactgttgggattaaagac
atgtggtaacacaccaacacttaattcttttcgtatctatctatctatct
atctatctatctgtctgtcttttaattttgagtcaggtctcactttgtag
ctttggctagtctaggactcacagatcaagacatatctttgacctcagta
gtcagagcagagatgatggattctgactttgagtcagctgatcaaaaagt
gagtttcaggac
gaattccagtcctgacttccttggtgatgaacagcaatgtggaaatgtaa
gccgaataaaccctttcctccccaactgcttcttggtcacgatgttttgt
tcaggaatacaaaccctgactaagacaaggcaactttgagaagagacaat
ttttttatccctttcaattccagagggttagagtccatgatgaggggagc
ccgaaataggcctggtggctggagtagaagccaagattcgtattttgaac
agcactgtgaaaccaatgagcaaactctctggtcttttcactctcacagc
ctgcctccagtgacacgctttctccagcaagacccctcttcctcaacgcc
ccaaacaatgctgagaactggagaccagacattcagatgccccaggctcc
agcagatatttctcattccaaatatctcactttctctgttgttgactccc
acctcagacatgtctgacactgagggccctaatatctgttgtcctagttt
ttatccagtgggaaagaagtttaagaaaacaaataattgtttcaatgttc
ccagtaaaactaaaactggagaatctctttgagaggtaccattctaagaa
gcagatactggacggttctcctcctaactttttgtttgtttttgttttgt
ttggtgttttagttttagttttttttttttttctaagacagggtttctct
gtatagccctggctgtcctggaactcactttgtagaccaggctggcctcg
agcacagaaatccacctgcctctgcctcccgagtgctgggattaaaggcg
tgcgccaccatgcatggcttttcctcttaacttttgtgtaccatgtttgt
ttgtttgattttgagctggatttttttttttttttttcttttttttttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_106661049_106662124
seq2: B6Ng01-042F19.b_45_1106

seq1  GAATTCCATTCCAAGAACCCACAGAGAAGGAGAGAAAGAACTCCCCAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTCCAAGAACCCACAGAGAAGGAGAGAAAGAACTCCCCAAAG  50

seq1  TTGTCCTCTGACCTCCACACTTGGGTTGTGACACTCAAGCTCCTGCACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCTCTGACCTCCACACTTGGGTTGTGACACTCAAGCTCCTGCACAA  100

seq1  GTATGCCTCTCCCCCCCAAAGTGTGCAAACAGGGGGAAATGGTGAAACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGCCTCTCCCCCCCAAAGTGTGCAAACAGGGGGAAATGGTGAAACTG  150

seq1  TGCTGTGATCACCTGCCTGCCCTGCTGTGAGAGCCCCCCTTGTCTCTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTGATCACCTGCCTGCCCTGCTGTGAGAGCCCCCCTTGTCTCTTCT  200

seq1  TCTCCAAGGGACTCATGGCAGGTGGTGGTTGGCTTGCTCATGTCATTATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAAGGGACTCATGGCAGGTGGTGGTTGGCTTGCTCATGTCATTATC  250

seq1  ATGTTGGCTCAGGACAGACAGGGTCTTAACTTAGCCTTTATGTTTGTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGGCTCAGGACAGACAGGGTCTTAACTTAGCCTTTATGTTTGTCTT  300

seq1  TTTAAACAGGTGAAACTGAGCAGTATTCTAAAGATTCTCATGGAGAAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAACAGGTGAAACTGAGCAGTATTCTAAAGATTCTCATGGAGAAGAA  350

seq1  GCTGGGGAGGACCTAGAACGTACCGAGGAGGCGAAGTGGAGAAACGCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGGAGGACCTAGAACGTACCGAGGAGGCGAAGTGGAGAAACGCTTC  400

seq1  TTTTATGAGGTAGTGTGCAGTGCCTGTGAATTTCATCAGACAAGTTATGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGAGGTAGTGTGCAGTGCCTGTGAATTTCATCAGACAAGTTATGC  450

seq1  TTCCCACTCTGTGAGATTAAGTCCAGCATACTCTAATGTCCCTCCAAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCACTCTGTGAGATTAAGTCCAGCATACTCTAATGTCCCTCCAAAAG  500

seq1  CTGATGTGAACATTTTATGCCTTTCTGAGCTCTTGACTTTCCTTTCCTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGTGAACATTTTATGCCTTTCTGAGCTCTTGACTTTCCTTTCCTAT  550

seq1  CTCTGCTTTCACAACTTTTTTCTTTTTCTTTTTTTTTTTTTTCTTTTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCTTTCACAACTTTTTTCTTTTTCTTTTTTTTTTTTTTCTTTTTTT  600

seq1  GGTTTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCTATCCTGGAACTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCTATCCTGGAACTC  650

seq1  ACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCC  700

seq1  TCCCAAGTGCTGGGAGTAAAGGCGTGCGCCACCACGCCCGGCTCACAACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAGTGCTGGGAGTAAAGGCGTGCGCCACCACGCCCGGCTCACAACT  750

seq1  TTTTTCATTCTAGACTTTTGTTGAGATGGTTCTGAGTATCCTGGCTGCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCATTCTAGACTTTTGTTGAGATGGTTCTGAGTATCCTGGCTGCCT  800

seq1  TGAATTCCTGATTCTCCTGCCTGTGCCTTCCAACTGTTGGGATTAAAGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTCCTGATTCTCCTGCCTGTGCCTTCCAACTGTTGGGATTAAAGAC  850

seq1  ATGTGGTAACACACCAACACTTAATTCTTTTCGTTATCTATCTATCTATC  900
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ATGTGGTAACACACCAACACTTAATTCTTTTCG-TATCTATCTATCTATC  899

seq1  TATCTATCTATCTGTCTGTCTTTTTAATTTTTGAGTCAGGGTCTCACTAT  950
      ||||||||||||||||||||||||  | |||||||||| ||||||||| |
seq2  TATCTATCTATCTGTCTGTCTTTT--AATTTTGAGTCA-GGTCTCACTTT  946

seq1  GTAGCTTTGGCTAGCCTAGGACTCACAGATCAAAGACATATCTTTGACCC  1000
      |||||||||||||| |||||||||||||||| ||||||||||||||||| 
seq2  GTAGCTTTGGCTAGTCTAGGACTCACAGATC-AAGACATATCTTTGACCT  995

seq1  CAGTAGTCAGGAGGCAGAGATAGATGGATTTCTGACTTTGAGGCCAGCCT  1050
      ||||||||||   |||||||| |||||| |||||||||||| | ||| ||
seq2  CAGTAGTCAG--AGCAGAGAT-GATGGA-TTCTGACTTTGA-GTCAG-CT  1039

seq1  GATCAAAAAAAAGTGAGTTTCAGGAC  1076
      ||||   |||||||||||||||||||
seq2  GATC---AAAAAGTGAGTTTCAGGAC  1062

seq1: chr11_106795611_106796511
seq2: B6Ng01-042F19.g_64_962 (reverse)

seq1  CAAAAAAAAAAAAAAAAAAAAAAAAAAAATCCAGGCTCAAAATCAAAACA  50
      ||||||||||| ||||||||||||||||||||| |||||||||| |||||
seq2  CAAAAAAAAAAGAAAAAAAAAAAAAAAAATCCA-GCTCAAAATC-AAACA  48

seq1  AACAAACATGGTACACAAAAGTTAAGAGGAAAAGCCATGCATGGTGGCGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACATGGTACACAAAAGTTAAGAGGAAAAGCCATGCATGGTGGCGC  98

seq1  ACGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGTGGATTTCTGTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGTGGATTTCTGTGC  148

seq1  TCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTATA  198

seq1  CAGAGAAACCCTGTCTTAGAAAAAAAAAAAAAACTAAAACTAAAACACCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAAACCCTGTCTTAGAAAAAAAAAAAAAACTAAAACTAAAACACCA  248

seq1  AACAAAACAAAAACAAACAAAAAGTTAGGAGGAGAACCGTCCAGTATCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAACAAAAACAAACAAAAAGTTAGGAGGAGAACCGTCCAGTATCTG  298

seq1  CTTCTTAGAATGGTACCTCTCAAAGAGATTCTCCAGTTTTAGTTTTACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTAGAATGGTACCTCTCAAAGAGATTCTCCAGTTTTAGTTTTACTG  348

seq1  GGAACATTGAAACAATTATTTGTTTTCTTAAACTTCTTTCCCACTGGATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACATTGAAACAATTATTTGTTTTCTTAAACTTCTTTCCCACTGGATA  398

seq1  AAAACTAGGACAACAGATATTAGGGCCCTCAGTGTCAGACATGTCTGAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTAGGACAACAGATATTAGGGCCCTCAGTGTCAGACATGTCTGAGG  448

seq1  TGGGAGTCAACAACAGAGAAAGTGAGATATTTGGAATGAGAAATATCTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGTCAACAACAGAGAAAGTGAGATATTTGGAATGAGAAATATCTGC  498

seq1  TGGAGCCTGGGGCATCTGAATGTCTGGTCTCCAGTTCTCAGCATTGTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCCTGGGGCATCTGAATGTCTGGTCTCCAGTTCTCAGCATTGTTTG  548

seq1  GGGCGTTGAGGAAGAGGGGTCTTGCTGGAGAAAGCGTGTCACTGGAGGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCGTTGAGGAAGAGGGGTCTTGCTGGAGAAAGCGTGTCACTGGAGGCA  598

seq1  GGCTGTGAGAGTGAAAAGACCAGAGAGTTTGCTCATTGGTTTCACAGTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTGAGAGTGAAAAGACCAGAGAGTTTGCTCATTGGTTTCACAGTGC  648

seq1  TGTTCAAAATACGAATCTTGGCTTCTACTCCAGCCACCAGGCCTATTTCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAAAATACGAATCTTGGCTTCTACTCCAGCCACCAGGCCTATTTCG  698

seq1  GGCTCCCCTCATCATGGACTCTAACCCTCTGGAATTGAAAGGGATAAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCCCTCATCATGGACTCTAACCCTCTGGAATTGAAAGGGATAAAAA  748

seq1  AATTGTCTCTTCTCAAAGTTGCCTTGTCTTAGTCAGGGTTTGTATTCCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTCTCTTCTCAAAGTTGCCTTGTCTTAGTCAGGGTTTGTATTCCTG  798

seq1  AACAAAACATCGTGACCAAGAAGCAGTTGGGGAGGAAAGGGTTTATTCGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAACATCGTGACCAAGAAGCAGTTGGGGAGGAAAGGGTTTATTCGG  848

seq1  CTTACATTTCCACATTGCTGTTCATCACCAAGGAAGTCAGGACTGGAATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACATTTCCACATTGCTGTTCATCACCAAGGAAGTCAGGACTGGAATT  898

seq1  C  901
      |
seq2  C  899