BAC Information

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BAC

Clone NameB6Ng01-043C04
Chromosome11 (Build37)
Map Location 117,623,162 - 117,778,200
singlet/doubletdoublet
Overlap geneTnrc6c, Tmc6, Tmc8, 6030468B19Rik, Syngr2, Tk1, Afmid, Birc5, LOC546519, Tha1
Upstream geneSt6galnac1, Mxra7, Jmjd6, 1110005A03Rik, LOC100043293, Sfrs2, Mfsd11, Mgat5b, LOC100042036, Sec14l1, Sept9, EG667423
Downstream geneSocs3, Pgs1, Dnahc17, Pscd1, Usp36, Timp2, Ddc8, Lgals3bp, Cant1, C1qtnf1, D230014K01Rik, D11Bwg0517e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-043C04.bB6Ng01-043C04.g
ACCDH869292DH869293
length1,126617
definitionDH869292|Mus musculus domesticus DNA, BAC clone: B6Ng01-043C04, 5' end.DH869293|Mus musculus domesticus DNA, BAC clone: B6Ng01-043C04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,623,162 - 117,624,287)(117,777,585 - 117,778,200)
sequence
gaattctcgggacagggctggtgacaattcatgtgtaaatgtttactcaa
ggactctgttgttgcatttaaagtcgcagtgtatatctctggagaaatga
tgtgtctgtctacttcagcagcttgtcattgtggactcatgcagaagatt
attaccagagtattgcaccacttcccatctgcaatataaagttaaagaga
aaaacaaactcttgttgaactgtggccatagatacttgtagagactggtg
ccgcgcacgaggcgcgggcgggcgggcggccggccgagcacttggacgtg
gtggtgactgcttttggaggagctgtgtttgggctcccacctgtttacag
actttttttttttttttttcctccttcagactttaaaataaaattttaaa
aaaattttaaaaatgttaaaaggaataaaaaaaaaagacttccatcattt
aaaacaaacaagcaaacaaacagcaacctattttcagatacagatgtgtt
gctccagagctctgggatgggacatgctgttcccctccagccgtcgcgcg
tgcgcggactctgtggactgtcttcacccctcctcaaggtgacagggcct
cgtggtctctgtcttgcacacgccagctcgctctcaggaacgccagggct
cccgagggcggtgccacaccacttcatgtatttttaaacccaactcctag
cactgaagatgttatttaaaaaaaaaaaaaaaaaaaagagagagaaaaaa
aaagaaagaaaagaaaaaaactttctctcccacacaaagaagaaaaatac
ctaatctctaatgtgtagcagttacatatttaccaaataatggactcaaa
agaaatagatgtttgaagagtgctttatatattaaaattgctttatgttt
taaagatgatcaatgttttgattgtttacaaggaagaaagacaatgaaat
caccaccccctcaggtatgttttaaaaaagtatatggaacattggtactc
tcctgcctacggtgtcgggaaactggtgcattacaatttttaattagctt
tttatggtttatcaaaacagaaagcagcaagcagttcttgcacggttgca
gccacgcaaggcttttctttagagga
gaattctataaggagcagggaaggggtttcctgagcacccagctcattcc
agcccagggagaggctccacgtcccagggtccgaggcaaaacgtaaccat
ccttgaagcccaggaacaaaaccagagcaggcaggttactcatagcccca
gtcaaacactgctgtacagacagcttctaaggctccatcacacaacccca
tgccgcccccccccgcccacccatgggctatagccgggagtctcttgcta
gcagggttctgagcctgccttaatctctcctgcccttggtagactcagag
aggctggctcccctccctatggcatcaacagcttagtaccatcttgccag
ccctccctgctcgcagccaaccctgtgtccccaatcctgactgcccccca
cccctgagccctggtttgcttgctattgatgtagttataggcgttctaac
caaaagcaactggtggggggagggtttatttatttatttatttatttatc
tttctggtctcgaagtccttcaccaagggaagccagggcagaaactctag
acaggaacctagaggcaggaacagaagcagaggccatggaggagtgctgt
gtattggctttgctctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_117623162_117624287
seq2: B6Ng01-043C04.b_45_1170

seq1  GAATTCTCGGGACAGGGCTGGTGACAATTCATGTGTAAATGTTTACTCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCGGGACAGGGCTGGTGACAATTCATGTGTAAATGTTTACTCAA  50

seq1  GGACTCTGTTGTTGCATTTAAAGTCGCAGTGTATATCTCTGGAGAAATGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCTGTTGTTGCATTTAAAGTCGCAGTGTATATCTCTGGAGAAATGA  100

seq1  TGTGTCTGTCTACTTCAGCAGCTTGTCATTGTGGACTCATGCAGAAGATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCTGTCTACTTCAGCAGCTTGTCATTGTGGACTCATGCAGAAGATT  150

seq1  ATTACCAGAGTATTGCACCACTTCCCATCTGCAATATAAAGTTAAAGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACCAGAGTATTGCACCACTTCCCATCTGCAATATAAAGTTAAAGAGA  200

seq1  AAAACAAACTCTTGTTGAACTGTGGCCATAGATACTTGTAGAGACTGGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAACTCTTGTTGAACTGTGGCCATAGATACTTGTAGAGACTGGTG  250

seq1  CCGCGCACGAGGCGCGGGCGGGCGGGCGGCCGGCCGAGCACTTGGACGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCGCACGAGGCGCGGGCGGGCGGGCGGCCGGCCGAGCACTTGGACGTG  300

seq1  GTGGTGACTGCTTTTGGAGGAGCTGTGTTTGGGCTCCCACCTGTTTACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGACTGCTTTTGGAGGAGCTGTGTTTGGGCTCCCACCTGTTTACAG  350

seq1  ACTTTTTTTTTTTTTTTTTCCTCCTTCAGACTTTAAAATAAAATTTTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTTTTTTTTTTTTTTCCTCCTTCAGACTTTAAAATAAAATTTTAAA  400

seq1  AAAATTTTAAAAATGTTAAAAGGAATAAAAAAAAAAGACTTCCATCATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTTAAAAATGTTAAAAGGAATAAAAAAAAAAGACTTCCATCATTT  450

seq1  AAAACAAACAAGCAAACAAACAGCAACCTATTTTCAGATACAGATGTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAACAAGCAAACAAACAGCAACCTATTTTCAGATACAGATGTGTT  500

seq1  GCTCCAGAGCTCTGGGATGGGACATGCTGTTCCCCTCCAGCCGTCGCGCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCAGAGCTCTGGGATGGGACATGCTGTTCCCCTCCAGCCGTCGCGCG  550

seq1  TGCGCGGACTCTGTGGACTGTCTTCACCCCTCCTCAAGGTGACAGGGCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGCGGACTCTGTGGACTGTCTTCACCCCTCCTCAAGGTGACAGGGCCT  600

seq1  CGTGGTCTCTGTCTTGCACACGCCAGCTCGCTCTCAGGAACGCCAGGGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGTCTCTGTCTTGCACACGCCAGCTCGCTCTCAGGAACGCCAGGGCT  650

seq1  CCCGAGGGCGGTGCCACACCACTTCATGTATTTTTAAACCCAACTCCTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGAGGGCGGTGCCACACCACTTCATGTATTTTTAAACCCAACTCCTAG  700

seq1  CACTGAAGATGTTATTTAAAAAAAAAAAAAAAAAAAAAGAGAGAGAAAAA  750
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CACTGAAGATGTTATTT-AAAAAAAAAAAAAAAAAAAAGAGAGAGAAAAA  749

seq1  AAAAGAAAGAAAAGAAAAAAACACACACACACACACAAAGAAGAAAAATA  800
      ||||||||||||||||||||||   | | | |||||||||||||||||||
seq2  AAAAGAAAGAAAAGAAAAAAACTTTCTCTCCCACACAAAGAAGAAAAATA  799

seq1  CCTAATCTCTAATGTGTAGCAGTTACATATTTACCAAATAATGGACTCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATCTCTAATGTGTAGCAGTTACATATTTACCAAATAATGGACTCAA  849

seq1  AAGAAATAGATGTTTGAAGAGTGCTTTATATATTAAAAATTGCTTTATGT  900
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AAGAAATAGATGTTTGAAGAGTGCTTTATATATT-AAAATTGCTTTATGT  898

seq1  TTTAAAGATGATCAATGTTTTGATTGTTTTACAAGGAAGAAAGACAATGA  950
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTTAAAGATGATCAATGTTTTGATTG-TTTACAAGGAAGAAAGACAATGA  947

seq1  AATCA-CACACCCTCAAGTATGTTTTAGAAAAGTATAT-GAACATT-GTA  997
      ||||| ||| |||||| |||||||||| |||||||||| ||||||| |||
seq2  AATCACCACCCCCTCAGGTATGTTTTAAAAAAGTATATGGAACATTGGTA  997

seq1  CTC-CCTGCCTACGTGGTCGGGAAACTTGTGCATTACATTTTTTAATTAG  1046
      ||| ||||||||||  ||||||||||| |||||||||| |||||||||||
seq2  CTCTCCTGCCTACGGTGTCGGGAAACTGGTGCATTACAATTTTTAATTAG  1047

seq1  CTTTTTAATGGTTTTATCAAAACAGAAAGCAAGCAAGCAAGTCCTGCACG  1096
      |||||| |||| |||||||||||||||||| ||||||||  || ||||||
seq2  CTTTTT-ATGG-TTTATCAAAACAGAAAGC-AGCAAGCAGTTCTTGCACG  1094

seq1  GTTGCAGCAACGCAGTGCTTT--CTTAGAGGA  1126
      |||||||| |||||  |||||   ||||||||
seq2  GTTGCAGCCACGCAAGGCTTTTCTTTAGAGGA  1126

seq1: chr11_117777585_117778200
seq2: B6Ng01-043C04.g_69_685 (reverse)

seq1  GAGAGC-AAGCCAATACACAGCACTCCTCCATGGCCTCTGCTTCTGTTCC  49
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCAAAGCCAATACACAGCACTCCTCCATGGCCTCTGCTTCTGTTCC  50

seq1  TGCCTCTAGGTTCCTGTCTAGAGTTTCTGCCCTGGCTTCCCTTGGTGAAG  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCTAGGTTCCTGTCTAGAGTTTCTGCCCTGGCTTCCCTTGGTGAAG  100

seq1  GACTTCGAGACCAGAAAGATAAATAAATAAATAAATAAATAAACCCTCCC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCGAGACCAGAAAGATAAATAAATAAATAAATAAATAAACCCTCCC  150

seq1  CCCACCAGTTGCTTTTGGTTAGAACGCCTATAACTACATCAATAGCAAGC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCAGTTGCTTTTGGTTAGAACGCCTATAACTACATCAATAGCAAGC  200

seq1  AAACCAGGGCTCAGGGGTGGGGGGCAGTCAGGATTGGGGACACAGGGTTG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAGGGCTCAGGGGTGGGGGGCAGTCAGGATTGGGGACACAGGGTTG  250

seq1  GCTGCGAGCAGGGAGGGCTGGCAAGATGGTACTAAGCTGTTGATGCCATA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCGAGCAGGGAGGGCTGGCAAGATGGTACTAAGCTGTTGATGCCATA  300

seq1  GGGAGGGGAGCCAGCCTCTCTGAGTCTACCAAGGGCAGGAGAGATTAAGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGGGAGCCAGCCTCTCTGAGTCTACCAAGGGCAGGAGAGATTAAGG  350

seq1  CAGGCTCAGAACCCTGCTAGCAAGAGACTCCCGGCTATAGCCCATGGGTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTCAGAACCCTGCTAGCAAGAGACTCCCGGCTATAGCCCATGGGTG  400

seq1  GGCGGGGGGGGGCGGCATGGGGTTGTGTGATGGAGCCTTAGAAGCTGTCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGGGGGGGGGCGGCATGGGGTTGTGTGATGGAGCCTTAGAAGCTGTCT  450

seq1  GTACAGCAGTGTTTGACTGGGGCTATGAGTAACCTGCCTGCTCTGGTTTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGCAGTGTTTGACTGGGGCTATGAGTAACCTGCCTGCTCTGGTTTT  500

seq1  GTTCCTGGGCTTCAAGGATGGTTACGTTTTGCCTCGGACCCTGGGACGTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTGGGCTTCAAGGATGGTTACGTTTTGCCTCGGACCCTGGGACGTG  550

seq1  GAGCCTCTCCCTGGGCTGGAATGAGCTGGGTGCTCAGGAAACCCCTTCCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTCTCCCTGGGCTGGAATGAGCTGGGTGCTCAGGAAACCCCTTCCC  600

seq1  TGCTCCTTATAGAATTC  616
      |||||||||||||||||
seq2  TGCTCCTTATAGAATTC  617