BAC Information

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BAC

Clone NameB6Ng01-043H09
Chromosome11 (Build37)
Map Location 106,963,152 - 107,124,803
singlet/doubletdoublet
Overlap geneBptf, Nol11, LOC671692, Pitpnc1
Upstream geneMap3k3, Limd2, 2610019A05Rik, 2610204L23Rik, Ddx42, Ftsj3, Psmc5, Smarcd2, Tcam1, Gh, Cd79b, Scn4a, 2310007L24Rik, Icam2, Ern1, LOC100041277, Tex2, Pecam1, Gm885, Polg2, Ddx5, Ccdc45, Smurf2, LOC666873, Kpna2, 1810010H24Rik, LOC100042899
Downstream genePsmd12, A830035A12Rik, Helz, Cacng1, Cacng4, Cacng5, Prkca
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-043H09.bB6Ng01-043H09.g
ACCDH869518DH869519
length1,1831,142
definitionDH869518|Mus musculus domesticus DNA, BAC clone: B6Ng01-043H09, 5' end.DH869519|Mus musculus domesticus DNA, BAC clone: B6Ng01-043H09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,963,152 - 106,964,344)(107,123,650 - 107,124,803)
sequence
gaattcactatgtgttggcggaacaccatccaagaactaaactccaagaa
aatgaaaggagtcttgtgacctcattttctccttggaatgtgctgctgtg
tcccttgccggtgtggcagacccgggtgagttgttacttgtttatttcct
ctgtggaagagcatgtttctgccatgtgcacacagcccaccatgcaaggc
ttacccttgtaattggacactttactcatgtgacccttaaacctcggagt
acaaattgtctaatgctctggataaagcgggctttgtagtctgtgtcaat
tttagactccatgcatccaggttcacactgctagctagtggtaaacaatt
atgaaatatgatattacaataaaataagatagtacaataggaacaaattc
aactagatggacagtctgttgatttcttagggttttttttattattatta
tttatagctgcatccctggaacttgagtgacaggagcacctagaagggtg
ctcagaaccaaacctgggccctctttagctgtcagcaagctctaaaccaa
tgtgccatctctccagctccacattctctcagcttcctcaagcaacggac
aaactactgaccgtgtccctaacagctacaggatatgtggatctattctg
atctctgaggactttctcctccacaacaaactcactgcttcaggcagaag
tccattctgcgctcagttgctttagtaagtttttactagaaatgaaatta
ctcaaacctgtagtaattgcatcaattcactctgattctgtctgctggca
ggatgtgggctatctgcaacacctcctccgtgcacgccctccaatctgct
cacagcagccatacttctcagttctcctctcaggcacatcaaatgctcac
acactcgtaccacctctcaccgattgctctgcactcctcacttcctgttg
acacctttctaaaaatggggtggcagctacctctcattctgctcatcaaa
aatacatactattcacactgacagctttttttctggaagtagaataaact
caatacaacacagtagcaaattatagcacactggctggggctgtcaaaca
gtcaccctttcacactgaaggttcaagggttgcgacagtcatctagcaaa
tcctctgcccactgcaagagtggcacgctctct
gaattccatcctaagatctttaactaattactgtatgactgtactgaaag
ttcctgtgtgcaagtaaggtctttcccgagcttcctgatagatgtgagtt
aaggagggagcctacagttcaggaagcagactcctgtttttcaactttgt
ttggaaactggtgttcctgcaaaaacctgtccacagacactttcagttca
caactctctcttgaaatggatgaacatcgctcgcacgatgggaaacagtt
tagtgctaggaaggcgtgaactttgagagccgggaccacagagaagggtc
aggaggaggcggtgctaagtctgtctccaacgttctcagaggttccgttc
cctgtctgaggcttctgtcttccgtggagtgctaagagccacacatgggg
ttcttgccagtggtaggcaatcacggtaccaagttcctgtctgagactct
tacagagcccaaacaagatgtgtctgtggtttccagagccggagtggacc
gaggatatgctgtgagtctgtctgagagtgatgggtcaattctacatttt
aactgttgtggagatgacaagacccccatctaatcatgcttgaaatacat
gtacacacacaccccaaccctggaaaaataccactgtaaaactcagggct
ggagaactgactcagtaactcataattcagaggaccagagaattcccaca
acccatgtcaggctgccttcttccagcctccaagggcatttgcctcacat
gcacacacccacagacagacacatatgcctgtgatttttaaattattcaa
aacaaatctctgaaacggttatctggaacaaaaataaataaatacaaaac
aaaggctacgatagtctactagaatgtgggactgtcgttgtgttttataa
acaacaagatggtactggatcttctatatacagtgggcttgttgtgtttg
cctagtctttggtttggtttcttttgttgagaacagatctcctgtcaccc
agctggcctcaaactccttaagtagcaaagaatgacctggacttccgatc
ttcctgactgtagctctcagtgctgggattatagaccatgttgccgggtt
tttggactgaacctgggaatcatgcacactagccatttctaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_106963152_106964344
seq2: B6Ng01-043H09.b_36_1218

seq1  GAATTCACTATGTGTTGGCGGAACACCATCCAAGAACTAAACTCCAAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTATGTGTTGGCGGAACACCATCCAAGAACTAAACTCCAAGAA  50

seq1  AATGAAAGGAGTCTTGTGACCTCATTTTCTCCTTGGAATGTGCTGCTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAAGGAGTCTTGTGACCTCATTTTCTCCTTGGAATGTGCTGCTGTG  100

seq1  TCCCTTGCCGGTGTGGCAGACCCGGGTGAGTTGTTACTTGTTTATTTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTGCCGGTGTGGCAGACCCGGGTGAGTTGTTACTTGTTTATTTCCT  150

seq1  CTGTGGAAGAGCATGTTTCTGCCATGTGCACACAGCCCACCATGCAAGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGAAGAGCATGTTTCTGCCATGTGCACACAGCCCACCATGCAAGGC  200

seq1  TTACCCTTGTAATTGGACACTTTACTCATGTGACCCTTAAACCTCGGAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCCTTGTAATTGGACACTTTACTCATGTGACCCTTAAACCTCGGAGT  250

seq1  ACAAATTGTCTAATGCTCTGGATAAAGCGGGCTTTGTAGTCTGTGTCAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATTGTCTAATGCTCTGGATAAAGCGGGCTTTGTAGTCTGTGTCAAT  300

seq1  TTTAGACTCCATGCATCCAGGTTCACACTGCTAGCTAGTGGTAAACAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGACTCCATGCATCCAGGTTCACACTGCTAGCTAGTGGTAAACAATT  350

seq1  ATGAAATATGATATTACAATAAAATAAGATAGTACAATAGGAACAAATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATATGATATTACAATAAAATAAGATAGTACAATAGGAACAAATTC  400

seq1  AACTAGATGGACAGTCTGTTGATTTCTTAGGGTTTTTTTTATTATTATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGATGGACAGTCTGTTGATTTCTTAGGGTTTTTTTTATTATTATTA  450

seq1  TTTATAGCTGCATCCCTGGAACTTGAGTGACAGGAGCACCTAGAAGGGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAGCTGCATCCCTGGAACTTGAGTGACAGGAGCACCTAGAAGGGTG  500

seq1  CTCAGAACCAAACCTGGGCCCTCTTTAGCTGTCAGCAAGCTCTAAACCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAACCAAACCTGGGCCCTCTTTAGCTGTCAGCAAGCTCTAAACCAA  550

seq1  TGTGCCATCTCTCCAGCTCCACATTCTCTCAGCTTCCTCAAGCAACGGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCATCTCTCCAGCTCCACATTCTCTCAGCTTCCTCAAGCAACGGAC  600

seq1  AAACTACTGACCGTGTCCCTAACAGCTACAGGATATGTGGATCTATTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTACTGACCGTGTCCCTAACAGCTACAGGATATGTGGATCTATTCTG  650

seq1  ATCTCTGAGGACTTTCTCCTCCACAACAAACTCACTGCTTCAGGCAGAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTGAGGACTTTCTCCTCCACAACAAACTCACTGCTTCAGGCAGAAG  700

seq1  TCCATTCTGCGCTCAGTTGCTTTAGTAAGTTTTTACTAGAAATGAAATTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTCTGCGCTCAGTTGCTTTAGTAAGTTTTTACTAGAAATGAAATTA  750

seq1  CTCAAACCTGTAGTAATTGCATCAATTCACTCTGATTCTGTCTGCTGGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAACCTGTAGTAATTGCATCAATTCACTCTGATTCTGTCTGCTGGCA  800

seq1  GGATGTGGGCTATCTGCAACACCTCCTCCGTGCACGCCCTCCAATCTGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTGGGCTATCTGCAACACCTCCTCCGTGCACGCCCTCCAATCTGCT  850

seq1  CACAGCAGCCATACTTCTCAGTTCTCCTCTCAGGCACATTCAAATGCTCA  900
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CACAGCAGCCATACTTCTCAGTTCTCCTCTCAGGCACA-TCAAATGCTCA  899

seq1  CACACTCGTACCACCTCTCACCGATTGCTCTGCACTCCTCACTTCCTGTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTCGTACCACCTCTCACCGATTGCTCTGCACTCCTCACTTCCTGTT  949

seq1  GACACCTTTCTAAAAATGGGGTGGCAGCTACCTCTCATTCTGCTCATCAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCTTTCTAAAAATGGGGTGGCAGCTACCTCTCATTCTGCTCATCAA  999

seq1  AAATACATACTATTCACACTGACAGCTTTTTTTCTGGAAGTAGAATAAAC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACATACTATTCACACTGACAGCTTTTTTTCTGGAAGTAGAATAAAC  1049

seq1  TCAATACCAACACAGTAGCAAAATTATAAGCACACTGGCTGGGGCTGTCA  1100
      |||||| |||||||||||| ||||||| ||||||||||||||||||||||
seq2  TCAATA-CAACACAGTAGC-AAATTAT-AGCACACTGGCTGGGGCTGTCA  1096

seq1  GAACAAGTCA-CCTCTCACACTG-ATGTTCCAGGGTTGCGACAGTTCATC  1148
       ||| ||||| ||| |||||||| | |||| ||||||||||||| |||||
seq2  -AAC-AGTCACCCTTTCACACTGAAGGTTCAAGGGTTGCGACAG-TCATC  1143

seq1  TAAGCAAATCCTCTGCCCAACTGCAAGAGTGGCA-GCTTCCTCTCT  1193
      | |||||||||||||||| ||||||||||||||| |||  ||||  
seq2  T-AGCAAATCCTCTGCCC-ACTGCAAGAGTGGCACGCT--CTCT--  1183

seq1: chr11_107123650_107124803
seq2: B6Ng01-043H09.g_68_1209 (reverse)

seq1  TTAGAAATTGGCTAGTGTGCATGAATTCCCAAGTTTCAGCTCCAAAAACC  50
      ||||||| ||||||||||||||| |||||| || ||||| ||||||||||
seq2  TTAGAAA-TGGCTAGTGTGCATG-ATTCCC-AGGTTCAG-TCCAAAAACC  46

seq1  CGGCACCATGGTCTGTGATCCCCGCACTGGGAGCTACAGTCAGGAAGATC  100
      ||||| |||||||| | ||||| |||||| ||||||||||||||||||||
seq2  CGGCAACATGGTCTATAATCCCAGCACTGAGAGCTACAGTCAGGAAGATC  96

seq1  GGAAGTTCCAGGTCATTCTCTGCTACTTAAGGAGTTTGAGGCCAGCCTGG  150
      ||||| ||||||||||||| ||||||||||||||||||||||||| ||||
seq2  GGAAG-TCCAGGTCATTCTTTGCTACTTAAGGAGTTTGAGGCCAG-CTGG  144

seq1  GTGACAGGAGATCTTGTCTCAAACAAAAGAAACCAAACCAAAAAGACTAG  200
      ||||||||||||||  |||| ||||||||||||||||||  |||||||||
seq2  GTGACAGGAGATCTGTTCTC-AACAAAAGAAACCAAACC--AAAGACTAG  191

seq1  GCAAACAACAACAAGCCAACTGTATATAGAAGATCCAGTACCATCTTGTT  250
      |||||| |||||||||| ||||||||||||||||||||||||||||||||
seq2  GCAAAC-ACAACAAGCCCACTGTATATAGAAGATCCAGTACCATCTTGTT  240

seq1  GTTTATAAACACA-AACGACAGTCCCACATTTCTAGTAGACTATCGTAGC  299
      ||||||||| ||| ||||||||||||||| ||||||||||||||||||||
seq2  GTTTATAAA-ACACAACGACAGTCCCACA-TTCTAGTAGACTATCGTAGC  288

seq1  CTTTGTTTTGTATTTATTTATTTTTGTTCCAGATAACCGTTTCAGAGATT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTTTGTATTTATTTATTTTTGTTCCAGATAACCGTTTCAGAGATT  338

seq1  TGTTTTGAATAATTTTAAAAATCACAGGCATATGTGTCTGTCTGTGGGTG  399
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGAATAA-TTTAAAAATCACAGGCATATGTGTCTGTCTGTGGGTG  387

seq1  TGTGCATGTGAGGCAAATGCCCTTGGAGGCTGGAAGAAGGCAGCCTGACA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCATGTGAGGCAAATGCCCTTGGAGGCTGGAAGAAGGCAGCCTGACA  437

seq1  TGGGTTGTGGGAATTCTCTGGTCCTCTGAATTATGAGTTACTGAGTCAGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTGTGGGAATTCTCTGGTCCTCTGAATTATGAGTTACTGAGTCAGT  487

seq1  TCTCCAGCCCTGAGTTTTACAGTGGTATTTTTCCAGGGTTGGGGTGTGTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAGCCCTGAGTTTTACAGTGGTATTTTTCCAGGGTTGGGGTGTGTG  537

seq1  TGTACATGTATTTCAAGCATGATTAGATGGGGGTCTTGTCATCTCCACAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACATGTATTTCAAGCATGATTAGATGGGGGTCTTGTCATCTCCACAA  587

seq1  CAGTTAAAATGTAGAATTGACCCATCACTCTCAGACAGACTCACAGCATA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTAAAATGTAGAATTGACCCATCACTCTCAGACAGACTCACAGCATA  637

seq1  TCCTCGGTCCACTCCGGCTCTGGAAACCACAGACACATCTTGTTTGGGCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCGGTCCACTCCGGCTCTGGAAACCACAGACACATCTTGTTTGGGCT  687

seq1  CTGTAAGAGTCTCAGACAGGAACTTGGTACCGTGATTGCCTACCACTGGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAGAGTCTCAGACAGGAACTTGGTACCGTGATTGCCTACCACTGGC  737

seq1  AAGAACCCCATGTGTGGCTCTTAGCACTCCACGGAAGACAGAAGCCTCAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACCCCATGTGTGGCTCTTAGCACTCCACGGAAGACAGAAGCCTCAG  787

seq1  ACAGGGAACGGAACCTCTGAGAACGTTGGAGACAGACTTAGCACCGCCTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGAACGGAACCTCTGAGAACGTTGGAGACAGACTTAGCACCGCCTC  837

seq1  CTCCTGACCCTTCTCTGTGGTCCCGGCTCTCAAAGTTCACGCCTTCCTAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGACCCTTCTCTGTGGTCCCGGCTCTCAAAGTTCACGCCTTCCTAG  887

seq1  CACTAAACTGTTTCCCATCGTGCGAGCGATGTTCATCCATTTCAAGAGAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAAACTGTTTCCCATCGTGCGAGCGATGTTCATCCATTTCAAGAGAG  937

seq1  AGTTGTGAACTGAAAGTGTCTGTGGACAGGTTTTTGCAGGAACACCAGTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTGAACTGAAAGTGTCTGTGGACAGGTTTTTGCAGGAACACCAGTT  987

seq1  TCCAAACAAAGTTGAAAAACAGGAGTCTGCTTCCTGAACTGTAGGCTCCC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAACAAAGTTGAAAAACAGGAGTCTGCTTCCTGAACTGTAGGCTCCC  1037

seq1  TCCTTAACTCACATCTATCAGGAAGCTCGGGAAAGACCTTACTTGCACAC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTAACTCACATCTATCAGGAAGCTCGGGAAAGACCTTACTTGCACAC  1087

seq1  AGGAACTTTCAGTACAGTCATACAGTAATTAGTTAAAGATCTTAGGATGG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACTTTCAGTACAGTCATACAGTAATTAGTTAAAGATCTTAGGATGG  1137

seq1  AATTC  1154
      |||||
seq2  AATTC  1142