BAC Information

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BAC

Clone NameB6Ng01-044F11
Chromosome11 (Build37)
Map Location 31,792,617 - 31,907,896
singlet/doubletdoublet
Overlap geneCpeb4, 4930524B15Rik, Nsg2
Upstream geneGpr75, LOC100042469, 4933407N01Rik, Asb3, Chac2, Stc2, 2310022M17Rik
Downstream geneLOC669207, Il9r, 3300001G02Rik, Rhbdf1, Mpg, Mare, Hba-x, Hba-a1, F830116E18Rik, Hbq1, Sh3pxd2b, Ubtd2, 1700007I06Rik, Stk10, Fbxw11, LOC666616, 1700008A04Rik, LOC666620, LOC670035
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-044F11.bB6Ng01-044F11.g
ACCDH870122DH870123
length1,104881
definitionDH870122|Mus musculus domesticus DNA, BAC clone: B6Ng01-044F11, 5' end.DH870123|Mus musculus domesticus DNA, BAC clone: B6Ng01-044F11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,906,795 - 31,907,896)(31,792,617 - 31,793,497)
sequence
gaattccagagaggctgaacaacctacacgaagtctcacagaaaataagc
agcttagcaaagatttgaacccaggtctccgggattataaagagtatgtg
ctgtaccataaatttcaggtcagatgccaatagttgatttcagaatatct
caattcctctcctcttaaatgtggttgaggctccttcttcatgaagattt
aacagttagtggaaaataaaagagtgtggctggagcctggagctgactca
gcaagctttgattgtgactgtgattgacatggggctttgctgaggtgggg
gtatctttctgtgctctgctttctacagccctgacatgcacttgatggca
tctccaggatatctacatgtagagttcagctgccattttctttgggtgag
tactgagacaataggtctattctctgaacccacttctgcatttgcaaagt
gggaatcatgggtagaaaacctcacagcattttccagagcacctgtttct
ttatggtgagaaggctccagaggtagaattggatgtcccaactgtctttg
ttatttttctatcactatgaagagacaccatgatcaaggcaacatataga
acagagaatttattagggcttacagtttcagagggtgagtccatgattat
tatgttttggagcatggtggcaggtaggcaggctagagcagtagctaaga
ggattttttcttgatctacaagcaggaggcagagagtggactgactgaga
atggtgtggactttttgaaactgtgacacaccccctccaacaaggccaca
cttcctgatccttcctaaacagttccaccaactagaacccaagcattcaa
atctatgagcctacgggagccactctcaatcaaacgccacaccaaccttc
aggagatcctactcatgactcggagacacttgcctgtttggttttgagtc
tattttcccacacattgattcttaacacagaagagggagatcctattaaa
atttccttctcctactggtgtggtaggactaaggctgctcatgccagtga
gacccatggggacttcagattctaactcccttcttgaattaaacccttcc
ctct
gaattcatagatggaggcatgagcctaaaacaccagttcataattctgct
tggctttgaaaagtcctaacccttgtgtcagtgcagtcttcactagcaaa
tgaggctccattcagggcactgcttcatctcctgcagactcctctttgac
ctttcatactgtgatgcttaattctaatagtgattctatcttaagatttt
gttaaaaagtgatcattacctttaccttaaaaacaatccattgtcctcta
agtcaggcactaaatcctgccaacccatctaaacaataaatcatcctcct
agtgctccttcctcagaaacagggcagaaagtcaccattcattctgtgag
atcatcatacctcttagaaaaatgtagattttaacttgagaatagtgtta
aagatttaatcatacacagacattttgcatttgggctaattttgcattga
aataattccatagaacatgaatgacctcatttatttatctcttatctgta
gttcctcctagatatctgtgtttaaatcataaagcctaaactttatgcgg
acactataatgcgagtcattgttgctacatatactagtttaaatgagggg
aaaaaagttacaaaggagaacttacattttttgtttaggacaatatttcc
ttggtatggagggttaaattttttcatttttcccataaacaaataagata
cttgatatgtctagagcttcaaaggttgtgtttgaattttcttatggatg
tgttgttgattccaactggtttcttcaaaacttttaacagatattcaaaa
gaacttagctttcttttgaccatgaatatcagagttctttgtggggtttt
tgttgttgttgttgttttggttttttggttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_31906795_31907896
seq2: B6Ng01-044F11.b_44_1147 (reverse)

seq1  AGAGGGAGGGGTTTAATTCAGGAAGGGAG-TAGGATCTGGAGTCCCATTG  49
      ||||||| |||||||||||| |||||||| ||| ||||| ||||||  ||
seq2  AGAGGGAAGGGTTTAATTCAAGAAGGGAGTTAGAATCTGAAGTCCCCATG  50

seq1  GG--TCACTGGCATGAGCAGCCTTAGTCCTACCACA-CAGTAGGAGAAGG  96
      ||  |||||||||||||||||||||||||||||||| |||||||||||||
seq2  GGTCTCACTGGCATGAGCAGCCTTAGTCCTACCACACCAGTAGGAGAAGG  100

seq1  AAATTTTTAATAGGATCT-CCTCTTCTGTGTTTAAGAATCAATGTGTGGG  145
      ||| |||||||||||||| ||||||||||| |||||||||||||||||||
seq2  AAA-TTTTAATAGGATCTCCCTCTTCTGTG-TTAAGAATCAATGTGTGGG  148

seq1  AAAATAGACTCAAAACCAAACAGGCAAGTGTCTTCCGAGTCATGAGTAGG  195
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AAAATAGACTCAAAACCAAACAGGCAAGTGTC-TCCGAGTCATGAGTAGG  197

seq1  ATCTCCTGAAAGGTTGGTGTGGCGTTTGATTGAGAGTGGCTCCCGTAGGC  245
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCTG-AAGGTTGGTGTGGCGTTTGATTGAGAGTGGCTCCCGTAGGC  246

seq1  TCATAGATTTGAATGCTTGGGTTCTAGTTGGTGGAACTGTTTAGGAAGGA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGATTTGAATGCTTGGGTTCTAGTTGGTGGAACTGTTTAGGAAGGA  296

seq1  TCAGGAAGTGTGGCCTTGTTGGAGGGGGTGTGTCACAGTTTC-AAAAGTC  344
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TCAGGAAGTGTGGCCTTGTTGGAGGGGGTGTGTCACAGTTTCAAAAAGTC  346

seq1  CACACCATTCTCAGTCAGTCCACTCTCTGCCTCCTGCTTGTAGATCAAGA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCATTCTCAGTCAGTCCACTCTCTGCCTCCTGCTTGTAGATCAAGA  396

seq1  AAAAATCCTCTTAGCTACTGCTCTAGCCTGCCTACCTGCCACCATGCTCC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCCTCTTAGCTACTGCTCTAGCCTGCCTACCTGCCACCATGCTCC  446

seq1  AAAACATAATAATCATGGACTCACCCTCTGAAACTGTAAGCCCTAATAAA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATAATAATCATGGACTCACCCTCTGAAACTGTAAGCCCTAATAAA  496

seq1  TTCTCTGTTCTATATGTTGCCTTGATCATGGTGTCTCTTCATAGTGATAG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGTTCTATATGTTGCCTTGATCATGGTGTCTCTTCATAGTGATAG  546

seq1  AAAAATAACAAAGACAGTTGGGACATCCAATTCTACCTCTGGAGCCTTCT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAACAAAGACAGTTGGGACATCCAATTCTACCTCTGGAGCCTTCT  596

seq1  CACCATAAAGAAACAGGTGCTCTGGAAAATGCTGTGAGGTTTTCTACCCA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATAAAGAAACAGGTGCTCTGGAAAATGCTGTGAGGTTTTCTACCCA  646

seq1  TGATTCCCACTTTGCAAATGCAGAAGTGGGTTCAGAGAATAGACCTATTG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCCCACTTTGCAAATGCAGAAGTGGGTTCAGAGAATAGACCTATTG  696

seq1  TCTCAGTACTCACCCAAAGAAAATGGCAGCTGAACTCTACATGTAGATAT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGTACTCACCCAAAGAAAATGGCAGCTGAACTCTACATGTAGATAT  746

seq1  CCTGGAGATGCCATCAAGTGCATGTCAGGGCTGTAGAAAGCAGAGCACAG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAGATGCCATCAAGTGCATGTCAGGGCTGTAGAAAGCAGAGCACAG  796

seq1  AAAGATACCCCCACCTCAGCAAAGCCCCATGTCAATCACAGTCACAATCA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATACCCCCACCTCAGCAAAGCCCCATGTCAATCACAGTCACAATCA  846

seq1  AAGCTTGCTGAGTCAGCTCCAGGCTCCAGCCACACTCTTTTATTTTCCAC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTGCTGAGTCAGCTCCAGGCTCCAGCCACACTCTTTTATTTTCCAC  896

seq1  TAACTGTTAAATCTTCATGAAGAAGGAGCCTCAACCACATTTAAGAGGAG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGTTAAATCTTCATGAAGAAGGAGCCTCAACCACATTTAAGAGGAG  946

seq1  AGGAATAGAGATATTCTGAAATCAACTATTGGCATCTGACCTGAAATTTA  994
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATTGAGATATTCTGAAATCAACTATTGGCATCTGACCTGAAATTTA  996

seq1  TGGTACAGCACATACTCTTTATAATCCCGGAGACCTGGGTTCAAATCTTT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTACAGCACATACTCTTTATAATCCCGGAGACCTGGGTTCAAATCTTT  1046

seq1  GCTAAGCTGCTTATTTTCTGTGAGACTTCGTGTAGGTTGTTCAGCCTCTC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGCTGCTTATTTTCTGTGAGACTTCGTGTAGGTTGTTCAGCCTCTC  1096

seq1  TGGAATTC  1102
      ||||||||
seq2  TGGAATTC  1104

seq1: chr11_31792617_31793497
seq2: B6Ng01-044F11.g_68_948

seq1  GAATTCATAGATGGAGGCATGAGCCTAAAACACCAGTTCATAATTCTGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAGATGGAGGCATGAGCCTAAAACACCAGTTCATAATTCTGCT  50

seq1  TGGCTTTGAAAAGTCCTAACCCTTGTGTCAGTGCAGTCTTCACTAGCAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTTGAAAAGTCCTAACCCTTGTGTCAGTGCAGTCTTCACTAGCAAA  100

seq1  TGAGGCTCCATTCAGGGCACTGCTTCATCTCCTGCAGACTCCTCTTTGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCTCCATTCAGGGCACTGCTTCATCTCCTGCAGACTCCTCTTTGAC  150

seq1  CTTTCATACTGTGATGCTTAATTCTAATAGTGATTCTATCTTAAGATTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCATACTGTGATGCTTAATTCTAATAGTGATTCTATCTTAAGATTTT  200

seq1  GTTAAAAAGTGATCATTACCTTTACCTTAAAAACAATCCATTGTCCTCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAAAGTGATCATTACCTTTACCTTAAAAACAATCCATTGTCCTCTA  250

seq1  AGTCAGGCACTAAATCCTGCCAACCCATCTAAACAATAAATCATCCTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGGCACTAAATCCTGCCAACCCATCTAAACAATAAATCATCCTCCT  300

seq1  AGTGCTCCTTCCTCAGAAACAGGGCAGAAAGTCACCATTCATTCTGTGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTCCTTCCTCAGAAACAGGGCAGAAAGTCACCATTCATTCTGTGAG  350

seq1  ATCATCATACCTCTTAGAAAAATGTAGATTTTAACTTGAGAATAGTGTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCATACCTCTTAGAAAAATGTAGATTTTAACTTGAGAATAGTGTTA  400

seq1  AAGATTTAATCATACACAGACATTTTGCATTTGGGCTAATTTTGCATTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTAATCATACACAGACATTTTGCATTTGGGCTAATTTTGCATTGA  450

seq1  AATAATTCCATAGAACATGAATGACCTCATTTATTTATCTCTTATCTGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTCCATAGAACATGAATGACCTCATTTATTTATCTCTTATCTGTA  500

seq1  GTTCCTCCTAGATATCTGTGTTTAAATCATAAAGCCTAAACTTTATGCGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTCCTAGATATCTGTGTTTAAATCATAAAGCCTAAACTTTATGCGG  550

seq1  ACACTATAATGCGAGTCATTGTTGCTACATATACTAGTTTAAATGAGGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTATAATGCGAGTCATTGTTGCTACATATACTAGTTTAAATGAGGGG  600

seq1  AAAAAAGTTACAAAGGAGAACTTACATTTTTTGTTTAGGACAATATTTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGTTACAAAGGAGAACTTACATTTTTTGTTTAGGACAATATTTCC  650

seq1  TTGGTATGGAGGGTTAAATTTTTTCATTTTTCCCATAAACAAATAAGATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTATGGAGGGTTAAATTTTTTCATTTTTCCCATAAACAAATAAGATA  700

seq1  CTTGATATGTCTAGAGCTTCAAAGGTTGTGTTTGAATTTTCTTATGGATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATATGTCTAGAGCTTCAAAGGTTGTGTTTGAATTTTCTTATGGATG  750

seq1  TGTTGTTGATTCCAACTGGTTTCTTCAAAACTTTTAACAGATATTCAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTTGATTCCAACTGGTTTCTTCAAAACTTTTAACAGATATTCAAAA  800

seq1  GAACTTAGCTTTCTTTTGACCATGAATATCAGAGTTCTTTGTGGGGTTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTAGCTTTCTTTTGACCATGAATATCAGAGTTCTTTGTGGGGTTTT  850

seq1  TGTTGTTGTTGTTGTTTTGGTTTTTTGGTTT  881
      |||||||||||||||||||||||||||||||
seq2  TGTTGTTGTTGTTGTTTTGGTTTTTTGGTTT  881