BAC Information

Click to search

BAC

Clone NameB6Ng01-044H02
Chromosome11 (Build37)
Map Location 90,988,257 - 90,989,452
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039104, Mmd, Hlf, Stxbp4, LOC100039267, Cox11, Tom1l1, LOC638903
Downstream geneEG664976, Kif2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-044H02.bB6Ng01-044H02.g
ACCDH870193DH870194
length1,1611,179
definitionDH870193|Mus musculus domesticus DNA, BAC clone: B6Ng01-044H02, 5' end.DH870194|Mus musculus domesticus DNA, BAC clone: B6Ng01-044H02, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctaaattgtatcccagagtttaatttaattagcaatatacattta
caacaaggaatgtaaagtccttaaggtcaaaaggatagaagaaacagttt
taaaaatctcagtgctaaaacgatgttgtttagcaaccaagtgaaggtca
tttttttttttttttttttttactataaaggaatctttagggtgctcact
gaaaatccattgcaataataaaagcaagcgtcactaaatcagccttgatt
ctccatgtaatgagccccggacattccaaggcactccagaataacacagg
accagtgttccttatgcatttctcattaactgtttaaagcctcctgactt
tgtggagtcaccgcactaggttctaagtggtctacgaaatggaaaagaaa
gcacaggctctccccactccccccaacagttgcagtttttgcaaagtatc
attaattgtcattccattatatatgggccttttaaagtaacccagcacag
atatatcagcattcaccatggaaaccgataagaatcatcctgatccaatt
cagaattcatctgggtcaagaaacctgtcacctgccagaaccaggaactt
acaacattcgagttctttcccctctcccttcgtcttcctccccaacccca
ccacacatgactgctcttcctcatctcccttccatgtccctctgtttctg
tcacacctcggtttggatacggccctggaccaattctcctactaaggtat
gcattctaatggatctcctgcctactcatggggttggagggcctccaaaa
cagaaaaacaaagagcatccatgcaccccaacttggcatcccaggctacc
tctctccctgtttctaatttaatatgagaatcctatcaccaaggtgtttg
tgacttcagaaacatcattgcaattcattgccttccatgaaaccagaatg
catcttaccactatttgctagcatagaatttggggagggggcagaggaag
tttagtagacttaagagagaatgctaactgaactgatttgtagatagtta
agttatctcaaatcatagtggtcagtgttctgtaatcgtgggagaaggct
caatttcctagcctgagtctagcttacgtagttggcagttcatgaacctc
gtaggacacat
gaattctcacttgaggaataccgaatggctgagaagcacctgaaaaaatg
ttcagcatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaatattcaggtgactgc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaagcttgtacaaccactctggaaataagtctggcggttcctca
aataattgtacttagtactactagaggatcctgcaatacctctcctgggc
atatatccagaagatgttccaactggtaagaaggacatatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatttactcaatg
gagtactacttaggtattaaaaagaatgaagttatgaaattcctaggcaa
atggatggacctggagggcatcatcttgagtgaggtaacacaatcacaaa
agaactcacatgatatgttctcactgataagtggatattagcccagaaac
ttaggatacccaagatataagatacaatttgagaaacacatgaaactcaa
gaagatcgaagaccaaagtgtggacactttgcctcttcttagaattggga
acaaaacacccatggaaggagttacagagacaaattttggagctgagacg
aaaggatggaccatctagagactgccatacccggggatccatcccataat
cagcctctaaaccctgacaccattgcatacactagcaagattttgctgaa
aggaccctgatacagctgtctcttgtgagactatgccggggcctagcaaa
cacataagtggatgctcacagtcagctattggatggatcacagggtccca
atagagagctagagaaagtacccaaggagcttgcgggatctgcaccctat
aggtggaacaacaaatgactaaccagtacacccctccccccaagaagttc
atgtctctagctgcaatgtatcagaagatggctagtccgtcaatcagtga
agagaggccattggtcgtgctaacttaatggcctcagtcaagggaatgtc
agggcaaagtggtggttgagtgttgtgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_90988257_90989452
seq2: B6Ng01-044H02.b_45_1205 (reverse)

seq1  ATGTGTCCTACGAGGATGTCATGGAACTGCCACACTTACCTGTTAGCATG  50
      |||||||||||||||   |||| ||||||||| || |||  || |||  |
seq2  ATGTGTCCTACGAGG--TTCAT-GAACTGCCA-AC-TAC--GTAAGCTAG  43

seq1  ACTTCCAAGCTAAGAGAAAATGAAGGCCTCTCTCCACCGGATTTTACAGA  100
      |||  || ||||   |||| |||  |||| |||||  ||    |||||||
seq2  ACT--CAGGCTA--GGAAATTGA--GCCT-TCTCCCACG---ATTACAGA  83

seq1  ACCACCTGACCAACTATGATTTTGAAAGATTAAACTTATACTATCTACAA  150
      ||   |||||| ||||||||||    ||||  |||||| |||||||||||
seq2  AC--ACTGACC-ACTATGATTT---GAGAT--AACTTA-ACTATCTACAA  124

seq1  ATTCAGTTTCAGTTAGCATTTCTCTTCCTTAAGGTCTACTAAACTTCCTT  200
      | |||| ||||||||||| ||||||  ||||| |||||||||||||||| 
seq2  A-TCAG-TTCAGTTAGCA-TTCTCT--CTTAA-GTCTACTAAACTTCCT-  167

seq1  CCTGCCCCCTCCCCAAATTCTATGCTTAGCAAATAGTGGTAAGATGCATT  250
       |||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  -CTGCCCCCTCCCCAAATTCTATGC-TAGCAAATAGTGGTAAGATGCATT  215

seq1  CTGGTTTCATGGAAGGCAATGAATTGCAATGATGTTTCTGAAGTCACAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTTCATGGAAGGCAATGAATTGCAATGATGTTTCTGAAGTCACAAA  265

seq1  CACCTTGGTGATAGGATTCTCATATTAAATTAGAAACAGGGAGAGAGGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTGGTGATAGGATTCTCATATTAAATTAGAAACAGGGAGAGAGGTA  315

seq1  GCCTGGGATGCCAAGTTGGGGTGCATGGATGCTCTTTGTTTTTCTGTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGGATGCCAAGTTGGGGTGCATGGATGCTCTTTGTTTTTCTGTTTT  365

seq1  GGAGGCCCTCCAACCCCATGAGTAGGCAGGAGATCCATTAGAATGCATAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCCCTCCAACCCCATGAGTAGGCAGGAGATCCATTAGAATGCATAC  415

seq1  CTTAGTAGGAGAATTGGTCCAGGGCCGTATCCAAACCGAGGTGTGACAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTAGGAGAATTGGTCCAGGGCCGTATCCAAACCGAGGTGTGACAGA  465

seq1  AACAGAGGGACATGGAAGGGAGATGAGGAAGAGCAGTCATGTGTGGTGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAGGGACATGGAAGGGAGATGAGGAAGAGCAGTCATGTGTGGTGGG  515

seq1  GTTGGGGAGGAAGACGAAGGGAGAGGGGAAAGAACTCGAATGTTGTAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGGGAGGAAGACGAAGGGAGAGGGGAAAGAACTCGAATGTTGTAAGT  565

seq1  TCCTGGTTCTGGCAGGTGACAGGTTTCTTGACCCAGATGAATTCTGAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGTTCTGGCAGGTGACAGGTTTCTTGACCCAGATGAATTCTGAATT  615

seq1  GGATCAGGATGATTCTTATCGGTTTCCATGGTGAATGCTGATATATCTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCAGGATGATTCTTATCGGTTTCCATGGTGAATGCTGATATATCTGT  665

seq1  GCTGGGTTACTTTAAAAGGCCCATATATAATGGAATGACAATTAATGATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGTTACTTTAAAAGGCCCATATATAATGGAATGACAATTAATGATA  715

seq1  CTTTGCAAAAACTGCAACTGTTGGGGGGAGTGGGGAGAGCCTGTGCTTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCAAAAACTGCAACTGTTGGGGGGAGTGGGGAGAGCCTGTGCTTTC  765

seq1  TTTTCCATTTCGTAGACCACTTAGAACCTAGTGCGGTGACTCCACAAAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCATTTCGTAGACCACTTAGAACCTAGTGCGGTGACTCCACAAAGT  815

seq1  CAGGAGGCTTTAAACAGTTAATGAGAAATGCATAAGGAACACTGGTCCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGGCTTTAAACAGTTAATGAGAAATGCATAAGGAACACTGGTCCTG  865

seq1  TGTTATTCTGGAGTGCCTTGGAATGTCCGGGGCTCATTACATGGAGAATC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATTCTGGAGTGCCTTGGAATGTCCGGGGCTCATTACATGGAGAATC  915

seq1  AAGGCTGATTTAGTGACGCTTGCTTTTATTATTGCAATGGATTTTCAGTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTGATTTAGTGACGCTTGCTTTTATTATTGCAATGGATTTTCAGTG  965

seq1  AGCACCCTAAAGATTCCTTTATAGTAAAAAAAAAAAAAAAAAAAAATGAC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCCTAAAGATTCCTTTATAGTAAAAAAAAAAAAAAAAAAAAATGAC  1015

seq1  CTTCACTTGGTTGCTAAACAACATCGTTTTAGCACTGAGATTTTTAAAAC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACTTGGTTGCTAAACAACATCGTTTTAGCACTGAGATTTTTAAAAC  1065

seq1  TGTTTCTTCTATCCTTTTGACCTTAAGGACTTTACATTCCTTGTTGTAAA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTTCTATCCTTTTGACCTTAAGGACTTTACATTCCTTGTTGTAAA  1115

seq1  TGTATATTGCTAATTAAATTAAACTCTGGGATACAATTTAGAATTC  1196
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATATTGCTAATTAAATTAAACTCTGGGATACAATTTAGAATTC  1161