BAC Information

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BAC

Clone NameB6Ng01-044I13
Chromosome11 (Build37)
Map Location 103,839,860 - 103,986,545
singlet/doubletdoublet
Overlap geneArf2, LOC100042645
Upstream geneDcakd, Nmt1, Plcd3, Acbd4, Hexim1, Hexim2, Fmnl1, 4933400C05Rik, Map3k14, Arhgap27, 5730442P18Rik, Plekhm1, Lrrc37a, Gm884, Lyzl6, Rprml, Gosr2, Wnt9b, Wnt3, Nsf, EG667631
Downstream geneCrhr1, 4933407P14Rik, Mapt, 1700081L11Rik, Cdc27, Myl4, LOC666721, EG629959, Itgb3, LOC666739, LOC629960, LOC666749, LOC632784, LOC276809, LOC100041125, 4921510J17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-044I13.bB6Ng01-044I13.g
ACCDH870258DH870259
length1,1061,126
definitionDH870258|Mus musculus domesticus DNA, BAC clone: B6Ng01-044I13, 5' end.DH870259|Mus musculus domesticus DNA, BAC clone: B6Ng01-044I13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,839,860 - 103,840,970)(103,985,420 - 103,986,545)
sequence
gaattcatggtcctccagctatatatggctcctctacaaactcctcatgt
atcagtgtgccttttctcttgtaagtgtagtcattctgatggtggtttcc
tagataaagacctgcattaaaatagtacaaagtaggacctactataaaat
ttaatttattattttttttccaagacagagtttctctgtgtagccctggc
tgtcctgtactcactttgtagaccaggctgacctcgaactaacagagatc
cacctgcctctgtctcttgagtgctgagattaaaggcatgtgtcaccaca
cacagcttctattttatttttatttttttaaagatttatgtattttttta
ttagcattgatgttttggctacttatatgtctgtatgaggatgtcagatc
ccttaaaactagagttacagacagttgtgagcctccatgtgggtgctggg
aattgaacccaggtcctatggaagaacagccggtgctcttaaccattgag
ccatttctccagccccctattttattcttaaggaaaaatattttatttaa
aatactctattttaaagcacctggtttggctcttgatctcagaggacccc
acccatggccgcttgggtctcattcacacgaacagcgtcacctttttggg
agtatacagtagaggacatggcgtttttcgtgtgttagcaaagtgagaac
agtcacttgtgctctgtgggtttcgcattggcagctaaggctctgcttga
atttccacatcagtggtctacttagtcagaattggaatccagaacttcag
gtagcataccaatcctgtgtgggtagggacttgaattttccctttttaat
ctgatgtgatatatcagacacagccttgacttacatgaaaatttctaagc
atgtcagagccttgagagctcttgtctgctgggtagactgcctggagggc
ctgggacacacagaggcacgggcagaggactaggcccagtttctcccttg
gaacagtgtggaatatctgtcatctgaccctacttcttctctactagagt
ccctcctcttgcagctccccatgaaaagggcctgtagctgggccagcgca
gatctc
gaattcattctgtagaccaagctgacctcgaaatcaaagttatcctcctg
cctctgcctcctgagtgctgggattaaaggtgtgtccccagcctgaaacc
gggtcttagatagtggtgttctgcaggagctctcatgctggcagagggtt
ctacctaggggatgaagggtttccagttgtattagaagacacagtaggct
cggctgaggcttcagctcttagcctcctgcatacagtacgatgacatact
ggcttcctccagcaaggatgctgcccatggtccttgtaagactaaggacc
tgtggtctaagtgcagtgggggcctggatgggctgtgccatctctgctcc
aagttggctgagaacacactgcctctccctctgaccacccattgcttgat
ttctgaagctgggtctgtggcactgagccagtctgggctttgctgcctgc
catgtggccaggccccagcagctcatctggacagaggccaatgcctccca
gccacacctgagccagagaagcagtgagcgagcagggtccagccaaaggc
cacacagccgcagcacattctgggagggacatcctgtttccctctttctt
tttgccaggtctctcctgtgtgatgggcttgcctgagattatacccgtat
gtagtcagatgaaggtggtgatcagggctgaagacattaggtcccatctg
caggctaaatgcataagggattgctgagacacgtggcagaggaaactgtc
acattgtagtagaggtctatggctagaaatctggctgggctgagcgcaca
aaggagacaagcaccggttaatagttaagaaggaccaatgtcatgcagtg
aatcttctgttgccctctgtattttaattttttcagtccttatttattta
taattatatgtaatacactgtagctgtcttcagacacacagaagagggca
tcagatttcattacggattgtacgagcccaccattgtggttgctgggatt
tgactcaggacctttggaaggagcagtcggcggcttctaacggctgagcc
atcctcccagcccccgtccttatttttaatggatggttcttaaactattt
aacctccctgtgtgcccaccccccac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_103839860_103840970
seq2: B6Ng01-044I13.b_47_1152

seq1  GAATTCATGGTCCTCCAGCTATATATGGCTCCTCTACAAACTCCTCATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGGTCCTCCAGCTATATATGGCTCCTCTACAAACTCCTCATGT  50

seq1  ATCAGTGTGCCTTTTCTCTTGTAAGTGTAGTCATTCTGATGGTGGTTTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTGTGCCTTTTCTCTTGTAAGTGTAGTCATTCTGATGGTGGTTTCC  100

seq1  TAGATAAAGACCTGCATTAAAATAGTACAAAGTAGGACCTACTATAAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAAAGACCTGCATTAAAATAGTACAAAGTAGGACCTACTATAAAAT  150

seq1  TTAATTTATTATTTTTTTTCCAAGACAGAGTTTCTCTGTGTAGCCCTGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTATTATTTTTTTTCCAAGACAGAGTTTCTCTGTGTAGCCCTGGC  200

seq1  TGTCCTGTACTCACTTTGTAGACCAGGCTGACCTCGAACTAACAGAGATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTGTACTCACTTTGTAGACCAGGCTGACCTCGAACTAACAGAGATC  250

seq1  CACCTGCCTCTGTCTCTTGAGTGCTGAGATTAAAGGCATGTGTCACCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGCCTCTGTCTCTTGAGTGCTGAGATTAAAGGCATGTGTCACCACA  300

seq1  CACAGCTTCTATTTTATTTTTATTTTTTTAAAGATTTATGTATTTTTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCTTCTATTTTATTTTTATTTTTTTAAAGATTTATGTATTTTTTTA  350

seq1  TTAGCATTGATGTTTTGGCTACTTATATGTCTGTATGAGGATGTCAGATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCATTGATGTTTTGGCTACTTATATGTCTGTATGAGGATGTCAGATC  400

seq1  CCTTAAAACTAGAGTTACAGACAGTTGTGAGCCTCCATGTGGGTGCTGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAAAACTAGAGTTACAGACAGTTGTGAGCCTCCATGTGGGTGCTGGG  450

seq1  AATTGAACCCAGGTCCTATGGAAGAACAGCCGGTGCTCTTAACCATTGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAACCCAGGTCCTATGGAAGAACAGCCGGTGCTCTTAACCATTGAG  500

seq1  CCATTTCTCCAGCCCCCTATTTTATTCTTAAGGAAAAATATTTTATTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTCTCCAGCCCCCTATTTTATTCTTAAGGAAAAATATTTTATTTAA  550

seq1  AATACTCTATTTTAAAGCACCTGGTTTGGCTCTTGATCTCAGAGGACCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTCTATTTTAAAGCACCTGGTTTGGCTCTTGATCTCAGAGGACCCC  600

seq1  ACCCATGGCCGCTTGGGTCTCATTCACACGAACAGCGTCACCTTTTTGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATGGCCGCTTGGGTCTCATTCACACGAACAGCGTCACCTTTTTGGG  650

seq1  AGTATACAGTAGAGGACATGGCGTTTTTCGTGTGTTAGCAAAGTGAGAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATACAGTAGAGGACATGGCGTTTTTCGTGTGTTAGCAAAGTGAGAAC  700

seq1  AGTCACTTGTGCTCTGTGGGTTTCGCATTGGCAGCTAAGGCTCTGCTTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACTTGTGCTCTGTGGGTTTCGCATTGGCAGCTAAGGCTCTGCTTGA  750

seq1  ATTTCCACATCAGTGGTCTACTTAGTCAGAATTGGAATCCAGAACTTCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCACATCAGTGGTCTACTTAGTCAGAATTGGAATCCAGAACTTCAG  800

seq1  GTAGCATACCAATCCTGTGTGGGTAGGGACTTGAATTTTCCCTTTTTAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCATACCAATCCTGTGTGGGTAGGGACTTGAATTTTCCCTTTTTAAT  850

seq1  CTGATGTGATATATCAGACACAGCCTTGACTTACATGAAAA-TTCTAAGC  899
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CTGATGTGATATATCAGACACAGCCTTGACTTACATGAAAATTTCTAAGC  900

seq1  ATGTCAGAAGCCTTGAGAGCTCTTGTCTGCTGGGTAGACTGCCTGGAGGG  949
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCAG-AGCCTTGAGAGCTCTTGTCTGCTGGGTAGACTGCCTGGAGGG  949

seq1  CCTGGGACACACAGAGGCACGGGCAGAGGACTAGGCCCAGTTTTCTCCCT  999
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CCTGGGACACACAGAGGCACGGGCAGAGGACTAGGCCCAG-TTTCTCCCT  998

seq1  TGG-ACAGTTGTGAAATCTCTGTCATCTGACCCTACTTCCTTCTCTACTA  1048
      ||| |||| |||| ||| |||||||||||||||||||| |||||||||||
seq2  TGGAACAG-TGTGGAATATCTGTCATCTGACCCTACTT-CTTCTCTACTA  1046

seq1  GAGTCTCTCCTCCTGCAGTCTCCCCATGAAAAGTGCCCTGAGCTGGGCAC  1098
      ||||| |||||| ||||| |||||||||||||| |||   |||||||  |
seq2  GAGTCCCTCCTCTTGCAG-CTCCCCATGAAAAGGGCCTGTAGCTGGG--C  1093

seq1  AAGCGCAGTTCTC  1111
       ||||||| ||||
seq2  CAGCGCAGATCTC  1106

seq1: chr11_103985420_103986545
seq2: B6Ng01-044I13.g_67_1192 (reverse)

seq1  GTGGGTGGTGGGCACA-AGGGAGGTTAAAATGTTTAAGAACCAT-CATTA  48
      ||||| |||||||||| ||||||||||||  ||||||||||||| |||||
seq2  GTGGGGGGTGGGCACACAGGGAGGTTAAATAGTTTAAGAACCATCCATTA  50

seq1  AAAATAAGGACTGGGGCTGGTGAGATGGCTCAGCGGTTAAGAG-CGCCGA  97
      ||||||||||| ||||||||   ||||||||||| ||||  || ||||||
seq2  AAAATAAGGACGGGGGCTGGGAGGATGGCTCAGCCGTTAGAAGCCGCCGA  100

seq1  CTGCT-CTTCCAAAGGTCCTGAGTTCAAATCCCAGCAACCAC-ATGGT-G  144
      ||||| ||||||||||||||||| |||||||||||||||||| ||||| |
seq2  CTGCTCCTTCCAAAGGTCCTGAG-TCAAATCCCAGCAACCACAATGGTGG  149

seq1  GCTCGTAACCATCCGTAATGAAATCTGATGCCCTCTTCTGGTGTGTCTGA  194
      |||||| || ||||||||||||||||||||||||||||| ||||||||||
seq2  GCTCGT-ACAATCCGTAATGAAATCTGATGCCCTCTTCT-GTGTGTCTGA  197

seq1  AGACAGCTACAGTGTATTACATATAATTAATAAATAAATAAGGACTGAAA  244
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AGACAGCTACAGTGTATTACATATAATT-ATAAATAAATAAGGACTGAAA  246

seq1  AAATTAAAATTACAGAGGGCAAACAGAAGATTCACTGCATGACATTGGTC  294
      ||||||||| |||||||||| |||||||||||||||||||||||||||||
seq2  AAATTAAAA-TACAGAGGGC-AACAGAAGATTCACTGCATGACATTGGTC  294

seq1  CTTCTTTACTATTAACCGGTGCTTGTCTCCTTTGTGCGCTCAGCCCAGCC  344
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTAACTATTAACCGGTGCTTGTCTCCTTTGTGCGCTCAGCCCAGCC  344

seq1  AGATTTCTAGCCATAGACCTCTACTACAATGTGACAGTTTCCTCTGCCAC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTCTAGCCATAGACCTCTACTACAATGTGACAGTTTCCTCTGCCAC  394

seq1  GTGTCTCAGCAATCCCTTATGCATTTAGCCTGCAGATGGGACCTAATGTC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTCAGCAATCCCTTATGCATTTAGCCTGCAGATGGGACCTAATGTC  444

seq1  TTCAGCCCTGATCACCACCTTCATCTGACTACATACGGGTATAATCTCAG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCCCTGATCACCACCTTCATCTGACTACATACGGGTATAATCTCAG  494

seq1  GCAAGCCCATCACACAGGAGAGACCTGGCAAAAAGAAAGAGGGAAACAGG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCCCATCACACAGGAGAGACCTGGCAAAAAGAAAGAGGGAAACAGG  544

seq1  ATGTCCCTCCCAGAATGTGCTGCGGCTGTGTGGCCTTTGGCTGGACCCTG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCCTCCCAGAATGTGCTGCGGCTGTGTGGCCTTTGGCTGGACCCTG  594

seq1  CTCGCTCACTGCTTCTCTGGCTCAGGTGTGGCTGGGAGGCATTGGCCTCT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGCTCACTGCTTCTCTGGCTCAGGTGTGGCTGGGAGGCATTGGCCTCT  644

seq1  GTCCAGATGAGCTGCTGGGGCCTGGCCACATGGCAGGCAGCAAAGCCCAG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGATGAGCTGCTGGGGCCTGGCCACATGGCAGGCAGCAAAGCCCAG  694

seq1  ACTGGCTCAGTGCCACAGACCCAGCTTCAGAAATCAAGCAATGGGTGGTC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCTCAGTGCCACAGACCCAGCTTCAGAAATCAAGCAATGGGTGGTC  744

seq1  AGAGGGAGAGGCAGTGTGTTCTCAGCCAACTTGGAGCAGAGATGGCACAG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGAGAGGCAGTGTGTTCTCAGCCAACTTGGAGCAGAGATGGCACAG  794

seq1  CCCATCCAGGCCCCCACTGCACTTAGACCACAGGTCCTTAGTCTTACAAG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCCAGGCCCCCACTGCACTTAGACCACAGGTCCTTAGTCTTACAAG  844

seq1  GACCATGGGCAGCATCCTTGCTGGAGGAAGCCAGTATGTCATCGTACTGT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATGGGCAGCATCCTTGCTGGAGGAAGCCAGTATGTCATCGTACTGT  894

seq1  ATGCAGGAGGCTAAGAGCTGAAGCCTCAGCCGAGCCTACTGTGTCTTCTA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGGAGGCTAAGAGCTGAAGCCTCAGCCGAGCCTACTGTGTCTTCTA  944

seq1  ATACAACTGGAAACCCTTCATCCCCTAGGTAGAACCCTCTGCCAGCATGA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAACTGGAAACCCTTCATCCCCTAGGTAGAACCCTCTGCCAGCATGA  994

seq1  GAGCTCCTGCAGAACACCACTATCTAAGACCCGGTTTCAGGCTGGGGACA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCCTGCAGAACACCACTATCTAAGACCCGGTTTCAGGCTGGGGACA  1044

seq1  CACCTTTAATCCCAGCACTCAGGAGGCAGAGGCAGGAGGATAACTTTGAT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTTAATCCCAGCACTCAGGAGGCAGAGGCAGGAGGATAACTTTGAT  1094

seq1  TTCGAGGTCAGCTTGGTCTACAGAATGAATTC  1126
      ||||||||||||||||||||||||||||||||
seq2  TTCGAGGTCAGCTTGGTCTACAGAATGAATTC  1126