BAC Information

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BAC

Clone NameB6Ng01-044L18
Chromosome11 (Build37)
Map Location 112,895,782 - 113,010,996
singlet/doubletdoublet
Overlap gene2610035D17Rik
Upstream geneLOC100041589, LOC100043020, EG668396, EG667038, LOC100041610, LOC671963, LOC667047, BC006965, Sox9
Downstream geneSlc39a11, Sstr2, Cog1, D11Wsu99e, D11Wsu47e, D11Ertd636e, Cdc42ep4, Sdk2, LOC100041739
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-044L18.bB6Ng01-044L18.g
ACCDH870404DH870405
length1,0941,091
definitionDH870404|Mus musculus domesticus DNA, BAC clone: B6Ng01-044L18, 5' end.DH870405|Mus musculus domesticus DNA, BAC clone: B6Ng01-044L18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,009,902 - 113,010,996)(112,895,782 - 112,896,881)
sequence
gaattctactgaacagagcctaggggaaacctatattgtgtcctggtttc
cttgtggccaactatgaatgtgaatccttgggtctctgcttccctgatgg
cacaatgaagaggttgaccagatggccctgtggttttttcatagatattg
ctggttcctaccaagttcagcccttgtgtgtaccaccccaggcctgtagc
agagtctctagtgtaagcccttgggaccagtttcaataaagtgtttaata
cacaaccttgcagactcttgcaaacctttctgggtaacacttacttcatt
gcacttttaaaaatgaataaaaaaagggaggggggagagaaagaaaactc
tgcttagcaggctcagcgtaattgaggttgacagatgtcactcagaattt
tattatttaaagccacaatgattttccaaataacctaaaaatatataatc
caacctcagaatagtgtcctgtaacagaggcaggcaagcctgtaggaaat
gaagtcatgatcttggcacccctcgagtgctggttcaatggctttgaaca
cttttatgttctcggagaaatacatgaacatggagccagccatatccagt
tactcagcggggctgccagggcctcggagaaccagggtgtcttgggtgtt
tttccctggctcctcagtcagcacaacacctcttctggttcctgtaagga
gatttttttttctttattctatgaaggcaggtcttgccatgcaatgatgt
gcacagattttcaagattaagtctataggtgggattgctgtattcagatc
atcaccatcccgctaggtgccagagacttcttagaaggaatctaagatgc
atatggtttctcccatcgccatccacatttatttcttaaatctgcatgta
ttttattcctcataattattatacatatttgcatcagtgacatgaatcat
aatcattacaatataccacctggcagagatattgtattatccaatagatg
tggatatgaggctcagagtttggagtttacctagtgtatagagtgaagga
gataccgggattggggcctttgggtctgggtggaggtaagattg
gaattctaagtttagactgggaccgatctccaagacaccttggttttgga
tgtgtatatttcaaaatccaaagattccgaaatttcaaacagttctttaa
atttttttttaccatttatttattgacttatttattgtgtgtatgtctgc
atgtatgcatgacataacatgcatgtgaaggtgaggggacagttggtagg
agttgggtctctactcacttcgtggattacagggattgacctctggtcat
cgggtgtagtggtgagtgggtacctttcctcactgggccagtgcctccac
acacacttcttaggttagtcagactttgtgataaataatgggaatacaat
ctaaagaggagctgatctactttggctgatggtttcagacagttcagggc
acatttgcttggtgccatggatcagcccaaaatgccgtggtggtgggaac
aagacgcagtagtgtttcttcacagaagaggagagtgaagaacaggagat
tcgggaagtgaaccgagaaatgtagcaagagccggtcacctgcatccctt
aactagatccccgcctcttacttttataacctctcagtaatgtctcaagt
atgagtccatcaaaggaccgagccattgattagatgtaatcatctctgga
aggaccataacagacacacccagaggtgcgcttcatacactatctactag
atccgtctccatccagtgacgtttaacgatttaagattagtcatcacact
tggtatccgagtcgtgcttgatagaggacacccaccctggattaacaaag
gctaagatgccgtgttgaaagagtgctgttgttctgagtttctgttccaa
gttcaaaacttagccctttggtacttctagaccacttcttagaagcaggt
cagaagatgaaatgggatccaggacatgagtcatatgctcagtgaatgat
ggaagcctgccagcatgaagactgatttcagcccagtggctacagacaaa
gccacacatagagagacccctggaatccagccttaagaggcaaagacaga
tggcacttggtctgtgcaaattggtgtgtcaggttcggtga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_113009902_113010996
seq2: B6Ng01-044L18.b_46_1139 (reverse)

seq1  CAATC-TACCT-CACCCAGACCCAAAG--CCCCATCCCGGTATCTCC-TC  45
      ||||| ||||| |||||||||||||||  ||| |||||||||||||| ||
seq2  CAATCTTACCTCCACCCAGACCCAAAGGCCCCAATCCCGGTATCTCCTTC  50

seq1  ACTCTTATACACTAGGTAAACTCCAAACTCTGAGCCTCAATATCCACATC  95
      |||| ||||||||||||||||||||||||||||||||| |||||||||||
seq2  ACTC-TATACACTAGGTAAACTCCAAACTCTGAGCCTC-ATATCCACATC  98

seq1  TATTGGATAATACAATATCTCTTGCCAGGTTGGTATATTGTTAATGATTA  145
      ||||||||||||||||||||| ||||||| |||||||||| |||||||||
seq2  TATTGGATAATACAATATCTC-TGCCAGG-TGGTATATTG-TAATGATTA  145

seq1  TGAATTCATGTCACTGATGCAAATAATGTATAATAATTATGAGGAATAAA  195
      || ||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TG-ATTCATGTCACTGATGCAAAT-ATGTATAATAATTATGAGGAATAAA  193

seq1  ATACATGCAGATTAAAGAAATAAATGTGGATTGACGATGGGAGAAACCAT  245
      ||||||||||||| |||||||||||||||| || ||||||||||||||||
seq2  ATACATGCAGATTTAAGAAATAAATGTGGA-TGGCGATGGGAGAAACCAT  242

seq1  ATGCATCTTAGATTCCTTCT-AGAAGTCTCTGGCACCTAGCGGGATGGTG  294
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ATGCATCTTAGATTCCTTCTAAGAAGTCTCTGGCACCTAGCGGGATGGTG  292

seq1  ATGATCTGAATACAGCAATCCCACCTATAGACTTAATCTTGAAAATCTGT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCTGAATACAGCAATCCCACCTATAGACTTAATCTTGAAAATCTGT  342

seq1  GCACATCATTGCATGGCAAGACCTGCCTTCATAGAATAAAG-AAAAAAAA  393
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GCACATCATTGCATGGCAAGACCTGCCTTCATAGAATAAAGAAAAAAAAA  392

seq1  TCTCCTTACAGGAACCAGAAGAGGTGTTGTGCTGACTGAGGAGCCAGGGA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTACAGGAACCAGAAGAGGTGTTGTGCTGACTGAGGAGCCAGGGA  442

seq1  AAAACACCCAAGACACCCTGGTTCTCCGAGGCCCTGGCAGCCCCGCTGAG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACACCCAAGACACCCTGGTTCTCCGAGGCCCTGGCAGCCCCGCTGAG  492

seq1  TAACTGGATATGGCTGGCTCCATGTTCATGTATTTCTCCGAGAACATAAA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGGATATGGCTGGCTCCATGTTCATGTATTTCTCCGAGAACATAAA  542

seq1  AGTGTTCAAAGCCATTGAACCAGCACTCGAGGGGTGCCAAGATCATGACT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTCAAAGCCATTGAACCAGCACTCGAGGGGTGCCAAGATCATGACT  592

seq1  TCATTTCCTACAGGCTTGCCTGCCTCTGTTACAGGACACTATTCTGAGGT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCCTACAGGCTTGCCTGCCTCTGTTACAGGACACTATTCTGAGGT  642

seq1  TGGATTATATATTTTTAGGTTATTTGGAAAATCATTGTGGCTTTAAATAA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTATATATTTTTAGGTTATTTGGAAAATCATTGTGGCTTTAAATAA  692

seq1  TAAAATTCTGAGTGACATCTGTCAACCTCAATTACGCTGAGCCTGCTAAG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTCTGAGTGACATCTGTCAACCTCAATTACGCTGAGCCTGCTAAG  742

seq1  CAGAGTTTTCTTTCTCTCCCCCCTCCCTTTTTTTATTCATTTTTAAAAGT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTTTTCTTTCTCTCCCCCCTCCCTTTTTTTATTCATTTTTAAAAGT  792

seq1  GCAATGAAGTAAGTGTTACCCAGAAAGGTTTGCAAGAGTCTGCAAGGTTG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGAAGTAAGTGTTACCCAGAAAGGTTTGCAAGAGTCTGCAAGGTTG  842

seq1  TGTATTAAACACTTTATTGAAACTGGTCCCAAGGGCTTACACTAGAGACT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTAAACACTTTATTGAAACTGGTCCCAAGGGCTTACACTAGAGACT  892

seq1  CTGCTACAGGCCTGGGGTGGTACACACAAGGGCTGAACTTGGTAGGAACC  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTACAGGCCTGGGGTGGTACACACAAGGGCTGAACTTGGTAGGAACC  942

seq1  AGCAATATCTATGAAAAAACCACAGGGCCATCTGGTCAACCTCTTCATTG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATATCTATGAAAAAACCACAGGGCCATCTGGTCAACCTCTTCATTG  992

seq1  TGCCATCAGGGAAGCAGAGACCCAAGGATTCACATTCATAGTTGGCCACA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATCAGGGAAGCAGAGACCCAAGGATTCACATTCATAGTTGGCCACA  1042

seq1  AGGAAACCAGGACACAATATAGGTTTCCCCTAGGCTCTGTTCAGTAGAAT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAACCAGGACACAATATAGGTTTCCCCTAGGCTCTGTTCAGTAGAAT  1092

seq1  TC  1095
      ||
seq2  TC  1094

seq1: chr11_112895782_112896881
seq2: B6Ng01-044L18.g_66_1156

seq1  GAATTCTAAGTTTAGACTGGGACCGATCTCCAAGACACCTTGGTTTTGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAGTTTAGACTGGGACCGATCTCCAAGACACCTTGGTTTTGGA  50

seq1  TGTGTATATTTCAAAATCCAAAGATTCCGAAATTTCAAACAGTTCTTTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTATATTTCAAAATCCAAAGATTCCGAAATTTCAAACAGTTCTTTAA  100

seq1  ATTTTTTTTTACCATTTATTTATTGACTTATTTATTGTGTGTATGTCTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTTTACCATTTATTTATTGACTTATTTATTGTGTGTATGTCTGC  150

seq1  ATGTATGCATGACATAACATGCATGTGAAGGTGAGGGGACAGTTGGTAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATGCATGACATAACATGCATGTGAAGGTGAGGGGACAGTTGGTAGG  200

seq1  AGTTGGGTCTCTACTCACTTCGTGGATTACAGGGATTGACCTCTGGTCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGGTCTCTACTCACTTCGTGGATTACAGGGATTGACCTCTGGTCAT  250

seq1  CGGGTGTAGTGGTGAGTGGGTACCTTTCCTCACTGGGCCAGTGCCTCCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGTGTAGTGGTGAGTGGGTACCTTTCCTCACTGGGCCAGTGCCTCCAC  300

seq1  ACACACTTCTTAGGTTAGTCAGACTTTGTGATAAATAATGGGAATACAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACTTCTTAGGTTAGTCAGACTTTGTGATAAATAATGGGAATACAAT  350

seq1  CTAAAGAGGAGCTGATCTACTTTGGCTGATGGTTTCAGACAGTTCAGGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGAGGAGCTGATCTACTTTGGCTGATGGTTTCAGACAGTTCAGGGC  400

seq1  ACATTTGCTTGGTGCCATGGATCAGCCCAAAATGCCGTGGTGGTGGGAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTGCTTGGTGCCATGGATCAGCCCAAAATGCCGTGGTGGTGGGAAC  450

seq1  AAGACGCAGTAGTGTTTCTTCACAGAAGAGGAGAGTGAAGAACAGGAGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACGCAGTAGTGTTTCTTCACAGAAGAGGAGAGTGAAGAACAGGAGAT  500

seq1  TCGGGAAGTGAACCGAGAAATGTAGCAAGAGCCGGTCACCTGCATCCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGGAAGTGAACCGAGAAATGTAGCAAGAGCCGGTCACCTGCATCCCTT  550

seq1  AACTAGATCCCCGCCTCTTACTTTTATAACCTCTCAGTAATGTCTCAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGATCCCCGCCTCTTACTTTTATAACCTCTCAGTAATGTCTCAAGT  600

seq1  ATGAGTCCATCAAAGGACCGAGCCATTGATTAGATGTAATCATCTCTGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTCCATCAAAGGACCGAGCCATTGATTAGATGTAATCATCTCTGGA  650

seq1  AGGACCATAACAGACACACCCAGAGGTGCGCTTCATACACTATCTACTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCATAACAGACACACCCAGAGGTGCGCTTCATACACTATCTACTAG  700

seq1  ATCCGTCTCCATCCAGTGACG-TTAACGA-TTAAGATTAGTCATCACACT  748
      ||||||||||||||||||||| ||||||| ||||||||||||||||||||
seq2  ATCCGTCTCCATCCAGTGACGTTTAACGATTTAAGATTAGTCATCACACT  750

seq1  TGGTATCCGAGTCGTGCTTGATAGAGGACACCCACCCTGGATTAACAAA-  797
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TGGTATCCGAGTCGTGCTTGATAGAGGACACCCACCCTGGATTAACAAAG  800

seq1  GCTAAGATGCCGTGTTGAAAGAGTGCTGTTGTTCTGAG-TTCTGTTCCAA  846
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GCTAAGATGCCGTGTTGAAAGAGTGCTGTTGTTCTGAGTTTCTGTTCCAA  850

seq1  GGTCCAAAACTCAGCCC-TTGGAACTTCTAGACCAC-TCTTAGAAGCAGG  894
       || ||||||| ||||| |||| ||||||||||||| |||||||||||||
seq2  -GTTCAAAACTTAGCCCTTTGGTACTTCTAGACCACTTCTTAGAAGCAGG  899

seq1  GCAGAGAAGGAAATGGGATCCAGGGACATGAGTCAGATGCTCAAGTGAAT  944
       ||||  | ||||||||||||| |||||||||||| |||||| |||||||
seq2  TCAGAAGATGAAATGGGATCCA-GGACATGAGTCATATGCTC-AGTGAAT  947

seq1  GAGTGAAGCCATGCAAGCATGAAGACCTGAGTTCCAGCCCCAGTGCCCAC  994
      ||  |||||| ||| |||||||||| |||| || ||| ||||||| | ||
seq2  GATGGAAGCC-TGCCAGCATGAAGA-CTGA-TTTCAG-CCCAGTGGCTAC  993

seq1  AGACAAAGCCACACATAGAGAGACACACTTGGAATCCCAGCCCTGAGGAG  1044
      ||||||||||||||||||||||  || | |||||| |||| ||| | |||
seq2  AGACAAAGCCACACATAGAGAG--ACCCCTGGAAT-CCAG-CCTTAAGAG  1039

seq1  GCAGAGACAGATGGGCCACTTGGTCTTGCCAAATTGGTGTGTTCCAGGTT  1094
      ||| ||||||||||  ||||||||||   |||||||||||||  ||||||
seq2  GCAAAGACAGATGG--CACTTGGTCTGTGCAAATTGGTGTGT--CAGGTT  1085

seq1  CTGTGA  1100
      | ||||
seq2  CGGTGA  1091