BAC Information

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BAC

Clone NameB6Ng01-044M13
Chromosome11 (Build37)
Map Location 51,965,984 - 52,115,201
singlet/doubletdoublet
Overlap geneOlfr1372-ps1, Olfr1371, Skp1a, Tcf7
Upstream gene5133400J02Rik, LOC622699, BC049762, Clk4, Col23a1, Agxt2l2, Hnrpab, Nola2, Rmnd5b, C330016O10Rik, D930048N14Rik, 0610009B22Rik, Sec24a, LOC100040402, Sar1b, Phf15, D11Ertd497e, Ube2b, Cdkl3, LOC100040437, Ppp2ca, Olfr1373
Downstream geneVdac1, 9530068E07Rik, LOC667659, LOC667667, LOC100040523, Fstl4, LOC623205, Hspa4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-044M13.bB6Ng01-044M13.g
ACCDH870440DH870441
length1,1281,061
definitionDH870440|Mus musculus domesticus DNA, BAC clone: B6Ng01-044M13, 5' end.DH870441|Mus musculus domesticus DNA, BAC clone: B6Ng01-044M13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,965,984 - 51,967,121)(52,114,152 - 52,115,201)
sequence
gaattcagggcaggaactcgaggcaggacctgaagcagaggccatggaga
aatgcttcttattggcttgctcctcttagcttgctcagtttgctttctta
tacaatatagacccacctaggggtggcaccacctacagtggacttgatca
cctatgtcaatcattaacttaggcttgtctagacaatctaatagaggtat
tttctcaaatgggatcttctctttgtagatgactctagtttgtgtcaaat
ggataggaaaactaacctttaccattaatatatttccccctttcttatag
ttttatgaactgcacatacatgcatgtaattttaaatctggattctatag
atgaggtaaaatattaaatgtgtctttctgaatctggcttgttgtgcttt
acaggatgattttaagttgtatccattgttttcctcgacaaataaaaaga
taaattacaaacatcttttaatatactaaagaaccatgggttacacagag
ctgcttatctttggtgactgtttcctgggctaaagtctaaagaaaattat
attttgtggttgtcagaacagaggtattttacttgcttatttaagtttat
taccaatgtttttgatgtagactgcccagacctcagcacagatcagcagt
gtcttcttgtgctgattttagggaaattcaagattaacataggagaaact
tgtagcaggggacattgttagatgaaacaagaaaaccattccttctagga
attttgtcatctagtgattctcctgcatagagtcaaacaccgttcaggaa
agtctctgtctcattttctcacctatgttcttttctgtcttccttccaac
ttttttattttcaaaatgatattgaatgttattagattatatgtacagtt
aaattgtcatagtttatactgtagttgtgttgatgactgtatcataaatc
aatttaataagtcttagctagtaccttttattataaaaggttacgccaac
ctcactttaaatatttttttcagtgccaatactcagggttccatcctgat
tctgttcatttcctcatacctgtatgaggttcaaagatgttctatgtatg
ggggccatcccaaagtgtgccctccttg
gaattctcagattctgtggaaggagagaatcagctctcaaaggttgtcct
ctgacctacacacacacacacacacacacacacacacacacacacataca
cacacacacacacacacacacacacacacacacatacacacacacacaca
cacacacacacacacatacacacacacacatacacacacatacacacaca
cacacacacatacacacatatacacacacacacacacacacacacacaca
cacacacacacaccccatgaaaaaaacgaacaaacaaaaacagaaaaaga
aaaaaaaaagaatattttctgggaactggagaggtggctcaggagttaag
agcactggctgcccttgtaaaggacctgggttcaattcccagtaccccaa
caacatcaggcagctcacaaccacatatgaatccagctccagggactatg
acactctcttctggcctctaagggcactgcatgcaagtggtatggagaca
tacatataggcaaaacacacacacaggcacacacacatgtgcacatgcac
atgtacacacacaaatatatattaaaataaccagggctttagaatgggtc
tctgcagttaagaccacaagtgtaggtatgcattatccttggcgggctgc
agggctgcagggctgcagggctgcagggctgcagggctgcaggtctgcag
gtcaggagacacagcttgatgccatcatccacagcagcaagaggactgtt
ctttatcatctgaggacctgactcgggtatagctggatgctgacttcaca
cagaaaggattctcaggatgaccagtatgaaaacagatttgttaaaatag
agaaggcattcaacatacaaacaatacaaaagaaaacaaacaaaacaaac
ccacccccaagtatgggtgtaggcttctcctggagtcacaggcatctggt
cataatcccaacttgccatgaggtagtttctgtagtactctcaaaaggat
ggttaaaatttttcttcctcatctctttcttttttaaagtgagatgcagg
gcagcttctgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_51965984_51967121
seq2: B6Ng01-044M13.b_47_1174

seq1  GAATTCAGGGCAGGAACTCGAGGCAGGACCTGAAGCAGAGGCCATGGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGGCAGGAACTCGAGGCAGGACCTGAAGCAGAGGCCATGGAGA  50

seq1  AATGCTTCTTATTGGCTTGCTCCTCTTAGCTTGCTCAGTTTGCTTTCTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTTCTTATTGGCTTGCTCCTCTTAGCTTGCTCAGTTTGCTTTCTTA  100

seq1  TACAATATAGACCCACCTAGGGGTGGCACCACCTACAGTGGACTTGATCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATATAGACCCACCTAGGGGTGGCACCACCTACAGTGGACTTGATCA  150

seq1  CCTATGTCAATCATTAACTTAGGCTTGTCTAGACAATCTAATAGAGGTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGTCAATCATTAACTTAGGCTTGTCTAGACAATCTAATAGAGGTAT  200

seq1  TTTCTCAAATGGGATCTTCTCTTTGTAGATGACTCTAGTTTGTGTCAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCAAATGGGATCTTCTCTTTGTAGATGACTCTAGTTTGTGTCAAAT  250

seq1  GGATAGGAAAACTAACCTTTACCATTAATATATTTCCCCCTTTCTTATAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAGGAAAACTAACCTTTACCATTAATATATTTCCCCCTTTCTTATAG  300

seq1  TTTTATGAACTGCACATACATGCATGTAATTTTAAATCTGGATTCTATAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGAACTGCACATACATGCATGTAATTTTAAATCTGGATTCTATAG  350

seq1  ATGAGGTAAAATATTAAATGTGTCTTTCTGAATCTGGCTTGTTGTGCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGTAAAATATTAAATGTGTCTTTCTGAATCTGGCTTGTTGTGCTTT  400

seq1  ACAGGATGATTTTAAGTTGTATCCATTGTTTTCCTCGACAAATAAAAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGATGATTTTAAGTTGTATCCATTGTTTTCCTCGACAAATAAAAAGA  450

seq1  TAAATTACAAACATCTTTTAATATACTAAAGAACCATGGGTTACACAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTACAAACATCTTTTAATATACTAAAGAACCATGGGTTACACAGAG  500

seq1  CTGCTTATCTTTGGTGACTGTTTCCTGGGCTAAAGTCTAAAGAAAATTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTATCTTTGGTGACTGTTTCCTGGGCTAAAGTCTAAAGAAAATTAT  550

seq1  ATTTTGTGGTTGTCAGAACAGAGGTATTTTACTTGCTTATTTAAGTTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTGGTTGTCAGAACAGAGGTATTTTACTTGCTTATTTAAGTTTAT  600

seq1  TACCAATGTTTTTGATGTAGACTGCCCAGACCTCAGCACAGATCAGCAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAATGTTTTTGATGTAGACTGCCCAGACCTCAGCACAGATCAGCAGT  650

seq1  GTCTTCTTGTGCTGATTTTAGGGAAATTCAAGATTAACATAGGAGAAACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCTTGTGCTGATTTTAGGGAAATTCAAGATTAACATAGGAGAAACT  700

seq1  TGTAGCAGGGGACATTGTTAGATGAAACAAGAAAACCATTCCTTCTAGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCAGGGGACATTGTTAGATGAAACAAGAAAACCATTCCTTCTAGGA  750

seq1  ATTTTGTCATCTAGTGATTCTCCTGCATAGAGTCAAACACCGTTCAGGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTCATCTAGTGATTCTCCTGCATAGAGTCAAACACCGTTCAGGAA  800

seq1  AGTCTCTGTCTCATTTTCTCACCTATGTTC-TTTCTGTCTTCCTTCCAAC  849
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AGTCTCTGTCTCATTTTCTCACCTATGTTCTTTTCTGTCTTCCTTCCAAC  850

seq1  TTTTTTATTTTCAAAAATGATATTGAATGTTTATTAGATTATATGTACAG  899
      |||||||||||| |||||||||||||||| ||||||||||||||||||||
seq2  TTTTTTATTTTC-AAAATGATATTGAATG-TTATTAGATTATATGTACAG  898

seq1  TTAAATTGTCATAGTTTATACTGTAGTTGTGTTGATGACTGTATCATAAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TTAAATTGTCATAGTTTATACTGTAGTTGTGTTGATGACTGTATCAT-AA  947

seq1  ATCAATTTAATAAAGTCTTAGCTAGTACCTTTTAATTATAAAAAGTTTAC  999
      ||||||||||| ||||||||||||||||||||| ||||||||| |||   
seq2  ATCAATTTAAT-AAGTCTTAGCTAGTACCTTTT-ATTATAAAAGGTT--A  993

seq1  CGCCAACCTCACTTTAAATATTTTTTTCAAGTGCCTATACTCAGGGGTTC  1049
      |||||||||||||||||||||||||||| |||||| ||||||| ||||||
seq2  CGCCAACCTCACTTTAAATATTTTTTTC-AGTGCCAATACTCA-GGGTTC  1041

seq1  ACAT-CTGATTCTGTTTCATTTCCTCATACCTAGATAGAGAGTTTAAAGA  1098
       ||| ||||||||| |||||||||||||||||  || ||| ||| |||||
seq2  -CATCCTGATTCTG-TTCATTTCCTCATACCTGTAT-GAG-GTTCAAAGA  1087

seq1  TGTTCTATGTAATGGGGGCCATCCCAAAAGTTG--CTCCTTG  1138
      |||||||||| |||||||||||||||||   ||  |||||||
seq2  TGTTCTATGT-ATGGGGGCCATCCCAAAGTGTGCCCTCCTTG  1128

seq1: chr11_52114152_52115201
seq2: B6Ng01-044M13.g_101_1133 (reverse)

seq1  CCAG-AGCTGCCCTGCAATCTCACTTATCAAAAAGAAAGAAATGAGAAGA  49
      |||| ||||||||||| ||||||||| | ||||||||||| |||||  ||
seq2  CCAGAAGCTGCCCTGC-ATCTCACTT-TAAAAAAGAAAGAGATGAG--GA  46

seq1  AAAAAATTTTTAACACTCC-TTTGAGATGTAACACAGAAACTCACCTCAA  98
      | |||| |||||||  ||| ||||||| |||  ||||||||| ||||| |
seq2  AGAAAAATTTTAACCATCCTTTTGAGA-GTACTACAGAAACT-ACCTC-A  93

seq1  TGGCAAG-TGGGATTAATGCCAAGATGCCTTGTGACTCCCAGGAGAAGCC  147
      ||||||| ||||||| ||| | ||||||| ||||||| ||||||||||||
seq2  TGGCAAGTTGGGATT-ATGACCAGATGCC-TGTGACT-CCAGGAGAAGCC  140

seq1  TACACCCATACTTGGGGGTGGGTTTTGTTTTGTTTTGTTTTCTTTTGTTT  197
      |||||||||||||||||||||| ||||||||| ||||||||||||||| |
seq2  TACACCCATACTTGGGGGTGGG-TTTGTTTTG-TTTGTTTTCTTTTGTAT  188

seq1  TGTTTTGTTTTGTTGGATGCCTTTCTCTATTCTTAATCAACTCCTGCTTT  247
      |||||   | ||||| ||||| ||||||||| |||| ||| | ||| |||
seq2  TGTTT--GTATGTTGAATGCC-TTCTCTATT-TTAA-CAAAT-CTGTTTT  232

seq1  CATACTGGTCATCCTGAGATTCCTTTCTGTGTTGAAGTCAGCCATCCAGC  297
      ||||||||||||||||||| ||||||||||| ||||||||| ||||||||
seq2  CATACTGGTCATCCTGAGAATCCTTTCTGTG-TGAAGTCAG-CATCCAGC  280

seq1  TATACCCGAGTCAGGTCCTCAGATGATTAAGAACAGTCCTCTTGCTGCTG  347
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TATACCCGAGTCAGGTCCTCAGATGATAAAGAACAGTCCTCTTGCTGCTG  330

seq1  TGGATGATGGCATCAAGCTGTGTCTCCTGCCCTGCAGCCCTGCAGCCCTG  397
      ||||||||||||||||||||||||||||| ||||||| ||||||||||||
seq2  TGGATGATGGCATCAAGCTGTGTCTCCTGACCTGCAGACCTGCAGCCCTG  380

seq1  CAGCCCTGCAGCCCTGCAGCCCTGCAGCCCTGCAGCCCGCCAAGGATAAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCTGCAGCCCTGCAGCCCTGCAGCCCTGCAGCCCGCCAAGGATAAT  430

seq1  GCATACCTACACTTGTGGTCTTAACTGCAGAGACCCATTCTAAAGCCCTG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATACCTACACTTGTGGTCTTAACTGCAGAGACCCATTCTAAAGCCCTG  480

seq1  GTTATTTTAATATATATTTGTGTGTGTACATGTGCATGTGCACATGTGTG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTTTAATATATATTTGTGTGTGTACATGTGCATGTGCACATGTGTG  530

seq1  TGTGCCTGTGTGTGTGTTTTGCCTATATGTATGTCTCCATACCACTTGCA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCTGTGTGTGTGTTTTGCCTATATGTATGTCTCCATACCACTTGCA  580

seq1  TGCAGTGCCCTTAGAGGCCAGAAGAGAGTGTCATAGTCCCTGGAGCTGGA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTGCCCTTAGAGGCCAGAAGAGAGTGTCATAGTCCCTGGAGCTGGA  630

seq1  TTCATATGTGGTTGTGAGCTGCCTGATGTTGTTGGGGTACTGGGAATTGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATATGTGGTTGTGAGCTGCCTGATGTTGTTGGGGTACTGGGAATTGA  680

seq1  ACCCAGGTCCTTTACAAGGGCAGCCAGTGCTCTTAACTCCTGAGCCACCT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGGTCCTTTACAAGGGCAGCCAGTGCTCTTAACTCCTGAGCCACCT  730

seq1  CTCCAGTTCCCAGAAAATATTCTTTTTTTTTTCTTTTTCTGTTTTTGTTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGTTCCCAGAAAATATTCTTTTTTTTTTCTTTTTCTGTTTTTGTTT  780

seq1  GTTCGTTTTTTTCATGGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCGTTTTTTTCATGGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  830

seq1  GTGTGTGTGTATATGTGTGTATGTGTGTGTGTGTGTGTGTATGTGTGTGT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTATATGTGTGTATGTGTGTGTGTGTGTGTGTATGTGTGTGT  880

seq1  ATGTGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGT  930

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTGTGTGT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTGTGTGT  980

seq1  GTGTGTGTGTGTGTGTGTGTGTGTAGGTCAGAGGACAACCTTTGAGAGCT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTAGGTCAGAGGACAACCTTTGAGAGCT  1030

seq1  GAT  1050
      |||
seq2  GAT  1033