BAC Information

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BAC

Clone NameB6Ng01-044N22
Chromosome11 (Build37)
Map Location 79,093,034 - 79,200,280
singlet/doubletdoublet
Overlap geneNf1
Upstream gene2610507B11Rik, BC030499, LOC100043544, LOC100042648, Spag5, Aldoc, Pigs, Unc119, Foxn1, OTTMUSG00000000132, Slc13a2, Slc46a1, A830091I15Rik, Vtn, Og9x, AI316787, Poldip2, Tnfaip1, Ift20, Tmem97, Nlk, LOC100043570, LOC100042674, 1810009O10Rik, 1810012P15Rik, Nos2, Lgals9, Ksr1, LOC100042697, Wsb1
Downstream geneOmg, Evi2b, Evi2a, Rab11fip4, OTTMUSG00000000185, LOC432584, Utp6, ENSMUSG00000072631, Suz12, Crlf3, Atad5, 1110002N22Rik, Centa2, Rnf135, Rhot1, Rhbdl3, 5730455P16Rik, Zfp207
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-044N22.bB6Ng01-044N22.g
ACCDH870499DH870500
length1,1411,143
definitionDH870499|Mus musculus domesticus DNA, BAC clone: B6Ng01-044N22, 5' end.DH870500|Mus musculus domesticus DNA, BAC clone: B6Ng01-044N22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,199,137 - 79,200,280)(79,093,034 - 79,094,182)
sequence
gaattcacaaaacctgcctctttagaatgaatttacttaccccagcaaga
catttttccagtgtatccaatatgatcaactgagagagatacaaattttt
ttcagcagcttctccaaatatcctctaaaaaatatattcagaaaatatga
ttaacacttcactacaaattagcacacatgaaatataaaagactgaagat
caagaaaaagtattactcttccactttgtcttttacattcaatgatactt
aaatctatcatttcttcctttaccctaaaaataaatttccaagctaacag
aaatagagatattagccaggagtggtggtgcacgcctttaatcccagcac
tcgggaggcagaggcaggtggatttctgagttcgaggccagcctggtcta
caaagtaagttccaggataaccagggctacacagggaaaccctgtctcaa
aaaaaccaaagaaacagaggtatttataaaagcctgctgttagctatata
acagtaaaacatgatgctttatattttttaatatctataagctggccaga
cataatgaaaagacattggtagtcccaacactatggaaatagtggcaaga
ggattagaagttcaatgctagcactagggaagtaagtttgaggcgccagc
ccagagtatgttatacactctatcggggtgggggagtgacagggaaggaa
aaagaaaaggaagaagggtgtgggggtaaataatgaatcaaggagagttt
aaaataactcatgagttaagaggcttgtacctgtcctgaattagcattta
gctatcgcctcctttgcaaaacaattaacttcttaattcttattaaacag
aatgctactacatcgcttacagtgaatcttaagcattcattactttcaac
tgaaccctgtatcacctacctactaacaagaaactgactttcggggctgg
tgagatggctcagtgggtagagcacccgactgctcttctgaaggtcggga
gttcaaatcccagcatccacatggtgggctcacaccatcttgtaacggat
ctgactcccttcttctggagtgtcctgaagacagcctacaggtgtactta
ctataacccataatatatcgtttaaaagacaaaaaaaactg
gaattcactgttagaccaggctagccttgaactcacaaaggtctgcctgg
ctctgcctcctgagtgctgggactaaaggtgtgcaccaccatacctagca
cttgttatttttaatgatttttttattacagtggtttttggatttatttt
gtattttctatttttattatgtatgtgttttgcctgcatgtaagtatatc
atgtgtgtacctgctgcctgaggagttcagacaagtgccagatcccctgg
aactgaagtcacagatggtttattttgtttttgtttgagacaggatctcg
tgtagctagggctgaatttgaactgctgattctcctgcctccatcttcca
aattctaggaccacaggtgttcacccccatgcctgactatggatcttatg
tgtattaaaatctgagcatagttgggtaatgtagtacatgcctgtaatgt
cagcacaaataaatatataaaaaaggaaaagaaatataattaagaaaaaa
atcataaaaatccagtttcttgctcacagcacccacattgtaagtgctca
ctggtcaccatggttggtggccacattattggacagctagggtataagac
cccaggaaattacaggaaatgctttgaggatggctctggtccaaaaaagc
catctgtgcgcagctctttcagtagaatttgagacaaaggctgcttgttc
ccagggcagctacatctggccagatgcaggcacagtaaactttcttctcc
cagactgtatgtgggggattcctttctgacacacaccttcagcacttggg
agtttcatgtggaattttgtttagggagcaagcatgagaactggcttctg
ttgtttgtatggtttattacatatgattacttagctagctggaggggatg
ggttagaaaaaacatgagtttcaccctgcagccctggctgacttggtgct
ctattatgtctaatactgccctcaaactcaaagcaagttttggctcagcc
ttctgaatggttgggactgtagactggaagtcactcctcctcaactctgt
ataactaagatggactttgacccagaattttgctaaggtgtaaaaaaaga
aggatctattgtttgcaccagctgctatctcctccactgccat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_79199137_79200280
seq2: B6Ng01-044N22.b_46_1186 (reverse)

seq1  CAGTTTTTTTTTTTTTTTTTTTAAAGATTTATTTATTGGTTATATGTAAG  50
      |||   |||||||| | |||| || ||| || |||| ||||||| |||||
seq2  CAG---TTTTTTTTGTCTTTTAAACGATATA-TTATGGGTTATA-GTAAG  45

seq1  TACA-CTGTA-GCTGTCTTCA-GACACTCCAGAAG-AGGGAGTCAGATCC  96
      |||| ||||| |||||||||| ||||||||||||| |||||||||||| |
seq2  TACACCTGTAGGCTGTCTTCAGGACACTCCAGAAGAAGGGAGTCAGAT-C  94

seq1  CGTTAC-AGATGGTTGTGAG-CCACCATGTGGTTGCTGGGATTTGAACTC  144
      |||||| |||||| |||||| ||||||||||| |||||||||||||||||
seq2  CGTTACAAGATGG-TGTGAGCCCACCATGTGGATGCTGGGATTTGAACTC  143

seq1  CGGACCTTCAGAAGAGCAGTCGGGTGCTCTTACCCACTGAGCCATCTCAC  194
      | ||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CCGACCTTCAGAAGAGCAGTCGGGTGCTC-TACCCACTGAGCCATCTCAC  192

seq1  CAGCCCCGAAAGTCAGTTTCTTGTTAGTAGGTAGGTGATACAGGGTTCAG  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCCGAAAGTCAGTTTCTTGTTAGTAGGTAGGTGATACAGGGTTCAG  242

seq1  TTTGAAAGTAATGAATGCTTAAGATTCACTGTAAGCGATGTAGTAGCATT  294
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TTGAAAGTAATGAATGCTTAAGATTCACTGTAAGCGATGTAGTAGCATT  291

seq1  CTGTTTAATAAGAATTAAGAAGTTAATTGTTTTGCAAAGGAGGCGATAGC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTAATAAGAATTAAGAAGTTAATTGTTTTGCAAAGGAGGCGATAGC  341

seq1  TAAATGCTAATTCAGGACAGGTACAAGCCTCTTAACTCATGAGTTATTTT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGCTAATTCAGGACAGGTACAAGCCTCTTAACTCATGAGTTATTTT  391

seq1  AAACTCTCCTTGATTCATTATTTACCCCCACACCCTTCTTCCTTTTCTTT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCTCCTTGATTCATTATTTACCCCCACACCCTTCTTCCTTTTCTTT  441

seq1  TTCCTTCCCTGTCACTCCCCCACCCCGATAGAGTGTATAACATACTCTGG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCCCTGTCACTCCCCCACCCCGATAGAGTGTATAACATACTCTGG  491

seq1  GCTGGCGCCTCAAACTTACTTCCCTAGTGCTAGCATTGAACTTCTAATCC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCGCCTCAAACTTACTTCCCTAGTGCTAGCATTGAACTTCTAATCC  541

seq1  TCTTGCCACTATTTCCATAGTGTTGGGACTACCAATGTCTTTTCATTATG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCCACTATTTCCATAGTGTTGGGACTACCAATGTCTTTTCATTATG  591

seq1  TCTGGCCAGCTTATAGATATTAAAAAATATAAAGCATCATGTTTTACTGT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCCAGCTTATAGATATTAAAAAATATAAAGCATCATGTTTTACTGT  641

seq1  TATATAGCTAACAGCAGGCTTTTATAAATACCTCTGTTTCTTTGGTTTTT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAGCTAACAGCAGGCTTTTATAAATACCTCTGTTTCTTTGGTTTTT  691

seq1  TTGAGACAGGGTTTCCCTGTGTAGCCCTGGTTATCCTGGAACTTACTTTG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGACAGGGTTTCCCTGTGTAGCCCTGGTTATCCTGGAACTTACTTTG  741

seq1  TAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCGA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCGA  791

seq1  GTGCTGGGATTAAAGGCGTGCACCACCACTCCTGGCTAATATCTCTATTT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGGGATTAAAGGCGTGCACCACCACTCCTGGCTAATATCTCTATTT  841

seq1  CTGTTAGCTTGGAAATTTATTTTTAGGGTAAAGGAAGAAATGATAGATTT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTAGCTTGGAAATTTATTTTTAGGGTAAAGGAAGAAATGATAGATTT  891

seq1  AAGTATCATTGAATGTAAAAGACAAAGTGGAAGAGTAATACTTTTTCTTG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATCATTGAATGTAAAAGACAAAGTGGAAGAGTAATACTTTTTCTTG  941

seq1  ATCTTCAGTCTTTTATATTTCATGTGTGCTAATTTGTAGTGAAGTGTTAA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCAGTCTTTTATATTTCATGTGTGCTAATTTGTAGTGAAGTGTTAA  991

seq1  TCATATTTTCTGAATATATTTTTTAGAGGATATTTGGAGAAGCTGCTGAA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATTTTCTGAATATATTTTTTAGAGGATATTTGGAGAAGCTGCTGAA  1041

seq1  AAAAATTTGTATCTCTCTCAGTTGATCATATTGGATACACTGGAAAAATG  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTTGTATCTCTCTCAGTTGATCATATTGGATACACTGGAAAAATG  1091

seq1  TCTTGCTGGGGTAAGTAAATTCATTCTAAAGAGGCAGGTTTTGTGAATTC  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCTGGGGTAAGTAAATTCATTCTAAAGAGGCAGGTTTTGTGAATTC  1141

seq1: chr11_79093034_79094182
seq2: B6Ng01-044N22.g_67_1209

seq1  GAATTCACTGTTAGACCAGGCTAGCCTTGAACTCACAAAGGTCTGCCTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGTTAGACCAGGCTAGCCTTGAACTCACAAAGGTCTGCCTGG  50

seq1  CTCTGCCTCCTGAGTGCTGGGACTAAAGGTGTGCACCACCATACCTAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCTCCTGAGTGCTGGGACTAAAGGTGTGCACCACCATACCTAGCA  100

seq1  CTTGTTATTTTTAATGATTTTTTTATTACAGTGGTTTTTGGATTTATTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTATTTTTAATGATTTTTTTATTACAGTGGTTTTTGGATTTATTTT  150

seq1  GTATTTTCTATTTTTATTATGTATGTGTTTTGCCTGCATGTAAGTATATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTCTATTTTTATTATGTATGTGTTTTGCCTGCATGTAAGTATATC  200

seq1  ATGTGTGTACCTGCTGCCTGAGGAGTTCAGACAAGTGCCAGATCCCCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGTACCTGCTGCCTGAGGAGTTCAGACAAGTGCCAGATCCCCTGG  250

seq1  AACTGAAGTCACAGATGGTTTATTTTGTTTTTGTTTGAGACAGGATCTCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAAGTCACAGATGGTTTATTTTGTTTTTGTTTGAGACAGGATCTCG  300

seq1  TGTAGCTAGGGCTGAATTTGAACTGCTGATTCTCCTGCCTCCATCTTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCTAGGGCTGAATTTGAACTGCTGATTCTCCTGCCTCCATCTTCCA  350

seq1  AATTCTAGGACCACAGGTGTTCACCCCCATGCCTGACTATGGATCTTATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTAGGACCACAGGTGTTCACCCCCATGCCTGACTATGGATCTTATG  400

seq1  TGTATTAAAATCTGAGCATAGTTGGGTAATGTAGTACATGCCTGTAATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTAAAATCTGAGCATAGTTGGGTAATGTAGTACATGCCTGTAATGT  450

seq1  CAGCACAAATAAATATATAAAAAAGGAAAAGAAATATAATTAAGAAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACAAATAAATATATAAAAAAGGAAAAGAAATATAATTAAGAAAAAA  500

seq1  ATCATAAAAATCCAGTTTCTTGCTCACAGCACCCACATTGTAAGTGCTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATAAAAATCCAGTTTCTTGCTCACAGCACCCACATTGTAAGTGCTCA  550

seq1  CTGGTCACCATGGTTGGTGGCCACATTATTGGACAGCTAGGGTATAAGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCACCATGGTTGGTGGCCACATTATTGGACAGCTAGGGTATAAGAC  600

seq1  CCCAGGAAATTACAGGAAATGCTTTGAGGATGGCTCTGGTCCAAAAAAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGAAATTACAGGAAATGCTTTGAGGATGGCTCTGGTCCAAAAAAGC  650

seq1  CATCTGTGCGCAGCTCTTTCAGTAGAATTTGAGACAAAGGCTGCTTGTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGTGCGCAGCTCTTTCAGTAGAATTTGAGACAAAGGCTGCTTGTTC  700

seq1  CCAGGGCAGCTACATCTGGCCAGATGCAGGCACAGTAAACTTTCTTCTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGCAGCTACATCTGGCCAGATGCAGGCACAGTAAACTTTCTTCTCC  750

seq1  CAGACTGTATGTGGGGGATTCCTTTCTGACACACACCTTCAGCACTTGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTGTATGTGGGGGATTCCTTTCTGACACACACCTTCAGCACTTGGG  800

seq1  AGTTTCATGTGGAA-TTTGTTTAGGGAGCAAGCATGAGAACTGGCTTCTG  849
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AGTTTCATGTGGAATTTTGTTTAGGGAGCAAGCATGAGAACTGGCTTCTG  850

seq1  TTGTTTGTATGGTTTATTACATATGATTACTTAGCTAGCTGGAGGGGATG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGTATGGTTTATTACATATGATTACTTAGCTAGCTGGAGGGGATG  900

seq1  GGTTAGAAAAAACATGAGTTTCACCCTGCAGCCCTGGCTGACCTGGTGCT  949
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GGTTAGAAAAAACATGAGTTTCACCCTGCAGCCCTGGCTGACTTGGTGCT  950

seq1  CTA-TATGTCTTATACTGCCCTCAAACTCAAAGCAGTTTTTGGCCTCAGC  998
      ||| ||||||| |||||||||||||||||||||||  |||||| ||||||
seq2  CTATTATGTCTAATACTGCCCTCAAACTCAAAGCAAGTTTTGG-CTCAGC  999

seq1  CTCCTG-ATGGTTGGGACTGTAGACTGG-AGTCACTCCTCCCTCAAACTC  1046
      || ||| ||||||||||||||||||||| |||||||||| |||| |||||
seq2  CTTCTGAATGGTTGGGACTGTAGACTGGAAGTCACTCCT-CCTC-AACTC  1047

seq1  TGTATAACTAAGGATGACTTTGAACCCATGATTTTGCCTAAGGGTTGAGA  1096
      ||||||||||||   ||||||| |||||  |||||| ||||||  | | |
seq2  TGTATAACTAAGATGGACTTTG-ACCCAGAATTTTG-CTAAGGTGTAAAA  1095

seq1  AGAGAAGGATCTATAGGTTTGGCACCAAGCTGGCTCAGCCTCCACACTGC  1146
      | |||||||||||| |  || ||||| |||||      ||||  ||||||
seq2  AAAGAAGGATCTATTG--TTTGCACC-AGCTGCTATCTCCTC--CACTGC  1140

seq1  CAT  1149
      |||
seq2  CAT  1143