BAC Information

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BAC

Clone NameB6Ng01-045G07
Chromosome11 (Build37)
Map Location 47,379,880 - 47,521,561
singlet/doubletdoublet
Overlap genenone
Upstream geneBC053393, Dppa1, EG237749, Timd2, LOC620678, Havcr1, Timd4, Sgcd, LOC628753
Downstream geneLOC100039647, LOC192895, Hn1l-ps2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-045G07.bB6Ng01-045G07.g
ACCDH870859DH870860
length1,055947
definitionDH870859|Mus musculus domesticus DNA, BAC clone: B6Ng01-045G07, 5' end.DH870860|Mus musculus domesticus DNA, BAC clone: B6Ng01-045G07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,379,880 - 47,380,936)(47,521,016 - 47,521,561)
sequence
gaattctttactatctgactgtagctgcattcaaagaaggaagactttct
tttagctatttatcagacaacttgcaaattgccacatcaacaaattttgt
aggcgatttcagatttttcccttccagctattcatttgctgatgtgtctc
ctcttcccttctcatctctaattttctgtctctgcatcaaaagcagccaa
tgacatctgaaagttaaactattcatttgataaaacgtcgtgaggagttg
gtaggtagcagactcatgtacagacagcttcctttctacttgttctcaga
agcagcaaagagactatgaatactagttgtttaatgtgtttattgttgtt
attgatgattgccatggaaacagaggtgggagcaaaacagaagctgagag
catcaagcatcaagaaaaacttcatgatatatttgaattcttttagaggc
aaagtacatcccaaactggcaaccaaaagaataaaatctgtcctccctgc
attaagtctggacattgctcaatgaagtcaggcaaggattgttgggctat
gtgaaagtcagtctttcactttgtatttactagttcactggagctcggac
ctggaaaagttacttgtaaacctgaaggcagaaagtgcagaatatgtaat
tccaaggctgcagttttattactctacaggactgcaacgttgtcatttgg
ttttgttttgttatttttgtctcttattgaactttattaaaaatccttca
ttgaacaaccttttcctttaaacactcttctctcggagtatgtgccttcc
taacttttctcatttaacaatgagttgcatcaatgctttgacatagactt
ttcatcttgtttgtatgatattcttgattgtactttgaacattaaacttt
cacaatgtagtatataacaatgagtttagcaagaaatcatgggtggaaat
ctttttacatgcttttccctaggagaaatagattatttattcagcccagt
aaaaaattaagtttcccaccagctttctgtctgagagcttccgtattaag
acagc
gaattcactcatcttcggagtaaacactcaggcagaatggttttgtgttc
tgcatgctttagatgaagatatggaggcacagtgggagagcacatgtgtt
tggaaacatgtctgcttcatgtcatttgttcttcctcttcttcggctgac
tattcatgaactgatgtgaccctgtctctctccctctttttaaaaccttg
tccttgctaatccttggtcttcccactcggcccatttctcgtggactctg
agatagagactgggatgggggactttgacttaaggctcactgttaaaacc
agtgtttgtcagctgaacaggagaaaaggtgtgaactggggaagtggttt
ataggaaagtttgtggggcaatttttgattaatgattaatgcaggaggcc
tcaaactaccgtgggcactgccatctctgcctggttagttctgaggtgta
gaaataagcaaactgagcaaaggagggagaacaagagaataagcaacatt
tgccccatgggtttgctttggttcctgcctccagagtcctagcctgactg
gaaactgtaagggaaaataatccctttcctccccaggttgtttgcagtag
aagaaaatatttaggatagaatccaacatcctcttctggattccatgggt
acttgtgcatgcatacgtacatactttaattttttcttttttcttctatt
gattttatttttttttttatttacaagttaaatgttgtcacctttcccag
tctcacctctgcaaacctccatgccatctcccctccgatttgcatgtaag
agggtaatctcctacccacccactcctgcctcacccctctagcatccccc
ttcacaggggcaacaagcctccatgggaccaaacacctcacctccaactg
atgccaaataggtcaatcctctgctacatacgtagtgggagccatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_47379880_47380936
seq2: B6Ng01-045G07.b_46_1100

seq1  GAATTCTTTACTATCTGACTGTAGCTGCATTCAAAGAAGGAAGACTTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTACTATCTGACTGTAGCTGCATTCAAAGAAGGAAGACTTTCT  50

seq1  TTTAGCTATTTATCAGACAACTTGCAAATTGCCACATCAACAAATTTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCTATTTATCAGACAACTTGCAAATTGCCACATCAACAAATTTTGT  100

seq1  AGGCGATTTCAGATTTTTCCCTTCCAGCTATTCATTTGCTGATGTGTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGATTTCAGATTTTTCCCTTCCAGCTATTCATTTGCTGATGTGTCTC  150

seq1  CTCTTCCCTTCTCATCTCTAATTTTCTGTCTCTGCATCAAAAGCAGCCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCCCTTCTCATCTCTAATTTTCTGTCTCTGCATCAAAAGCAGCCAA  200

seq1  TGACATCTGAAAGTTAAACTATTCATTTGATAAAACGTCGTGAGGAGTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATCTGAAAGTTAAACTATTCATTTGATAAAACGTCGTGAGGAGTTG  250

seq1  GTAGGTAGCAGACTCATGTACAGACAGCTTCCTTTCTACTTGTTCTCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGTAGCAGACTCATGTACAGACAGCTTCCTTTCTACTTGTTCTCAGA  300

seq1  AGCAGCAAAGAGACTATGAATACTAGTTGTTTAATGTGTTTATTGTTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCAAAGAGACTATGAATACTAGTTGTTTAATGTGTTTATTGTTGTT  350

seq1  ATTGATGATTGCCATGGAAACAGAGGTGGGAGCAAAACAGAAGCTGAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATGATTGCCATGGAAACAGAGGTGGGAGCAAAACAGAAGCTGAGAG  400

seq1  CATCAAGCATCAAGAAAAACTTCATGATATATTTGAATTCTTTTAGAGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAAGCATCAAGAAAAACTTCATGATATATTTGAATTCTTTTAGAGGC  450

seq1  AAAGTACATCCCAAACTGGCAACCAAAAGAATAAAATCTGTCCTCCCTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTACATCCCAAACTGGCAACCAAAAGAATAAAATCTGTCCTCCCTGC  500

seq1  ATTAAGTCTGGACATTGCTCAATGAAGTCAGGCAAGGATTGTTGGGCTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGTCTGGACATTGCTCAATGAAGTCAGGCAAGGATTGTTGGGCTAT  550

seq1  GTGAAAGTCAGTCTTTCACTTTGTATTTACTAGTTCACTGGAGCTCGGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAGTCAGTCTTTCACTTTGTATTTACTAGTTCACTGGAGCTCGGAC  600

seq1  CTGGAAAAGTTACTTGTAAACCTGAAGGCAGAAAGTGCAGAATATGTAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAAAGTTACTTGTAAACCTGAAGGCAGAAAGTGCAGAATATGTAAT  650

seq1  TCCAAGGCTGCAGTTTTATTACTCTACAGGACTGCAACGTTGTCATTTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGGCTGCAGTTTTATTACTCTACAGGACTGCAACGTTGTCATTTGG  700

seq1  TTTTGTTTTGTTATTTTTGTCTCTTATTGAACTTTATTAAAAATCCTTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTGTTATTTTTGTCTCTTATTGAACTTTATTAAAAATCCTTCA  750

seq1  TTGAACAACCTTTTCCTTTAAACACTCTTCTCTCGGAGTATGTGCCTTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACAACCTTTTCCTTTAAACACTCTTCTCTCGGAGTATGTGCCTTCC  800

seq1  TAACTTTTCTCATTTAACAATGAGTTGCATCAATGCTTTGACATAGACTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTTTCTCATTTAACAATGAGTTGCATCAATGCTTTGACATAGACTT  850

seq1  TTCATCTTGTTTGTATGATATTCTTGATTGTACTTTGAACATTAAACTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCTTGTTTGTATGATATTCTTGATTGTACTTTGAACATTAAACTTT  900

seq1  CACAATGTAATATTATAACAATGAGTTTAGCAAGAAATCA-GGGTGGAAT  949
      ||||||||| || ||||||||||||||||||||||||||| |||||||| 
seq2  CACAATGTAGTA-TATAACAATGAGTTTAGCAAGAAATCATGGGTGGAAA  949

seq1  TCTTTTTACATGC-TTTCCCTAGGAG-AATAGATTTATTTATTCAGCCAA  997
      ||||||||||||| |||||||||||| |||||| ||||||||||||||  
seq2  TCTTTTTACATGCTTTTCCCTAGGAGAAATAGA-TTATTTATTCAGCC-C  997

seq1  AGTAAAATAGTAAGTTTCCGA-CAGCTTTCTGTCTGAGAGTCTTCAGTTA  1046
      ||||||| | ||||||||| | |||||||||||||||||| |||| | ||
seq2  AGTAAAAAATTAAGTTTCCCACCAGCTTTCTGTCTGAGAG-CTTCCG-TA  1045

seq1  TTAAGTACAGC  1057
      ||||| |||||
seq2  TTAAG-ACAGC  1055

seq1: chr11_47521016_47521561
seq2: B6Ng01-045G07.g_66_611 (reverse)

seq1  CAGGCTAGGACTCTGGAGGCAGGAACCAAAGCAAACCCATGGGGCAAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTAGGACTCTGGAGGCAGGAACCAAAGCAAACCCATGGGGCAAATG  50

seq1  TTGCTTATTCTCTTGTTCTCCCTCCTTTGCTCAGTTTGCTTATTTCTACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTATTCTCTTGTTCTCCCTCCTTTGCTCAGTTTGCTTATTTCTACA  100

seq1  CCTCAGAACTAACCAGGCAGAGATGGCAGTGCCCACGGTAGTTTGAGGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGAACTAACCAGGCAGAGATGGCAGTGCCCACGGTAGTTTGAGGCC  150

seq1  TCCTGCATTAATCATTAATCAAAAATTGCCCCACAAACTTTCCTATAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCATTAATCATTAATCAAAAATTGCCCCACAAACTTTCCTATAAAC  200

seq1  CACTTCCCCAGTTCACACCTTTTCTCCTGTTCAGCTGACAAACACTGGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCCCCAGTTCACACCTTTTCTCCTGTTCAGCTGACAAACACTGGTT  250

seq1  TTAACAGTGAGCCTTAAGTCAAAGTCCCCCATCCCAGTCTCTATCTCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAGTGAGCCTTAAGTCAAAGTCCCCCATCCCAGTCTCTATCTCAGA  300

seq1  GTCCACGAGAAATGGGCCGAGTGGGAAGACCAAGGATTAGCAAGGACAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCACGAGAAATGGGCCGAGTGGGAAGACCAAGGATTAGCAAGGACAAG  350

seq1  GTTTTAAAAAGAGGGAGAGAGACAGGGTCACATCAGTTCATGAATAGTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAAAAAGAGGGAGAGAGACAGGGTCACATCAGTTCATGAATAGTCA  400

seq1  GCCGAAGAAGAGGAAGAACAAATGACATGAAGCAGACATGTTTCCAAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGAAGAAGAGGAAGAACAAATGACATGAAGCAGACATGTTTCCAAACA  450

seq1  CATGTGCTCTCCCACTGTGCCTCCATATCTTCATCTAAAGCATGCAGAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGCTCTCCCACTGTGCCTCCATATCTTCATCTAAAGCATGCAGAAC  500

seq1  ACAAAACCATTCTGCCTGAGTGTTTACTCCGAAGATGAGTGAATTC  546
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACCATTCTGCCTGAGTGTTTACTCCGAAGATGAGTGAATTC  546