BAC Information

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BAC

Clone NameB6Ng01-046G03
Chromosome11 (Build37)15 (Build37)
Map Location 16,225,911 - 16,226,94398,499,200 - 98,499,414
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC665660, Vstm2
Downstream geneSec61g, Akt2-ps, LOC665689, LOC627583, Egfr, 2810442I21Rik, A630050E13Rik, Plek, 1500041B16Rik, LOC100042644, Ppp3r1, Pno1, AI553587, C1d, LOC382486
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-046G03.bB6Ng01-046G03.g
ACCDH871564DH871565
length1,071957
definitionDH871564|Mus musculus domesticus DNA, BAC clone: B6Ng01-046G03, 5' end.DH871565|Mus musculus domesticus DNA, BAC clone: B6Ng01-046G03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(16,225,911 - 16,226,943)(98,499,200 - 98,499,414)
sequence
gaattcacaacagagaaatctcaaatggcagagaaacacttaaaaaagca
ttcaaagtctttagtcatcaggaaaatgcaaatgaaaacaactctgaggt
ttcatgttacacacatcagaatagctgagatcaaaactcaggacaaagca
catgctggcaaggatgtggagcaagggacacactccgccattgccggtgg
gagtgcaaacttgtgcaacaactttgggaataaatctggcactttctcag
aaaactgggaatagttctacctcaagatccagctataccactcctgggca
taaatacaaaagatgctccaccatcccacaaagacactttttcaactatg
ttcatagtagctttattcgtaatagacagaaagtaataacaacttagata
tcccttaactgacgaatagataaagataatgtggcccagctatacagtag
aatagtattcagctattaaaaacaaggacacaatgaattttgcaggcaaa
tgggtgaaattcgagaataccatcctgagtgaggtaacacagccccaaaa
ggacatggatgtcctttagagtttttattgaagggcatatataatttcta
tcattttgttgcacccctcttggttccgggactcagcagaacttaggaaa
ttagtctgaacaggttagagggtgcaccagagaaccggacagcttctggg
acaggcagaagcacagagccgctgaggcagcacccttggcgggccgcaga
cagccagccaccgtccagaccagaggacaggtgtccgcctggctcgggag
gcggcctcagcctcagcagcagcggtcgccatcttggttccaggactccc
tggaacttaggaatttagtctgcacaggtgagagtctgcacacagaagct
gacagcttctgggaactgcaaagcacacagcttctgagaatgcccgtttt
gggctctctcgacagagagtcgaaaacaagatatctgcgcacttcctgta
gaagctgcagcagaagtgctctgagcactgaaactcagaggaaagaatct
gtctccagtctgctgatgacg
gaattctcagtttagttctgtaccccatgttttgattgggatgtatagtt
ttttgatgattagcttcttgagttctttatatattttggatattagccct
ctatcagatgtgaggttagtgaagattttttcccagtctgtaggttgcta
attttgactatgtcctttgccttacagaagctttccagtttcatgaggtc
ccatttatcaattcttgatcttagagcatgagccattggagttctgtttg
ggaaatttcccccttgtgccaatgagttcaaggctctttcccactttatc
ttctattagattcagtgtatcttgtatttagagtttttgtagttacaaca
ttaaaaacgcagaagacaagctggagagatagcttggtgtttaagagtac
tggctggggctggtgagatggctcagcggttaagagcgccgactgctctt
ctgaaggtcctgagttcaaatcccagcaaccacatggtggctcacaacca
cccgtaatgagatctgacaccctcttctggagtgtctgaagacagctaca
gtgtgcttacatataataaataaataaataaataaataaataaataaata
ttaaaaaaaaaaaaaagagtactggctgctcttccagaggactttggttc
aattcagcactcataaggtagcttacaatggtatgaatgtccagttttag
aagataagatactctcacgaagaaaatcgtgccagtaaaaacagtaatgt
acaagcagaataaagaaacagtattgaaaaacttaaaggtagataaagcc
ccttgtaaagtcatgcccatcagaataataccttattacaatatagtagt
acaatatatttaaaacctagatgggactgaaagatgtattccatgttcca
aacataactgtcaccctagaccattacacccagaaacagcataaaatgca
gaagaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_16225911_16226943
seq2: B6Ng01-046G03.b_106_1114

seq1  AGTCATCAGGAAAATGCAAATGAAAACAACTCTGAGGTTTCATGTTACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATCAGGAAAATGCAAATGAAAACAACTCTGAGGTTTCATGTTACAC  50

seq1  ACATCAGAATAGCTGAGATCAAAACTCAGGACAAAGCACATGCTGGCAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAGAATAGCTGAGATCAAAACTCAGGACAAAGCACATGCTGGCAAG  100

seq1  GATGTGGAGCAAGGGACACACTCCGCCATTGCCGGTGGGAGTGCAAACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGGAGCAAGGGACACACTCCGCCATTGCCGGTGGGAGTGCAAACTT  150

seq1  GTGCAACAACTTTGGGAATAAATCTGGCACTTTCTCAGAAAACTGGGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAACAACTTTGGGAATAAATCTGGCACTTTCTCAGAAAACTGGGAAT  200

seq1  AGTTCTACCTCAAGATCCAGCTATACCACTCCTGGGCATAAATACAAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTACCTCAAGATCCAGCTATACCACTCCTGGGCATAAATACAAAAG  250

seq1  ATGCTCCACCATCCCACAAAGACACTTTTTCAACTATGTTCATAGTAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCCACCATCCCACAAAGACACTTTTTCAACTATGTTCATAGTAGCT  300

seq1  TTATTCGTAATAGACAGAAAGTAATAACAACTTAGATATCCCTTAACTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCGTAATAGACAGAAAGTAATAACAACTTAGATATCCCTTAACTGA  350

seq1  CGAATAGATAAAGATAATGTGGCCCAGCTATACAGTAGAATAGTATTCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAATAGATAAAGATAATGTGGCCCAGCTATACAGTAGAATAGTATTCAG  400

seq1  CTATTAAAAACAAGGACACAATGAATTTTGCAGGCAAATGGGTGAAATTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTAAAAACAAGGACACAATGAATTTTGCAGGCAAATGGGTGAAATTC  450

seq1  GAGAATACCATCCTGAGTGAGGTAACACAGCCCCAAAAGGACATGGATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATACCATCCTGAGTGAGGTAACACAGCCCCAAAAGGACATGGATGT  500

seq1  CCTTTAGAGTTTTTATTGAAGGGCATATATAATTTCTATCATTTTGTTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAGAGTTTTTATTGAAGGGCATATATAATTTCTATCATTTTGTTGC  550

seq1  ACCCCTCTTGGTTCCGGGACTCAGCAGAACTTAGGAAATTAGTCTGAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTCTTGGTTCCGGGACTCAGCAGAACTTAGGAAATTAGTCTGAACA  600

seq1  GGTTAGAGGGTGCACCAGAGAACCGGACAGCTTCTGGGACAGGCAGAAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAGAGGGTGCACCAGAGAACCGGACAGCTTCTGGGACAGGCAGAAGC  650

seq1  ACAGAGCCGCTGAGGCAGCACCCTTGGCGGGCCGCAGACAGCCAGCCACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGCCGCTGAGGCAGCACCCTTGGCGGGCCGCAGACAGCCAGCCACC  700

seq1  GTCCAGACCAGAGGACAGGTGTCCGCCTGGCTCGGGAGGCGGCCTCAGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGACCAGAGGACAGGTGTCCGCCTGGCTCGGGAGGCGGCCTCAGCC  750

seq1  TCAGCAGCAGCGGTCGCCATCTTGGTTCCAGGACTCCCTGGAACTTAGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAGCAGCGGTCGCCATCTTGGTTCCAGGACTCCCTGGAACTTAGGA  800

seq1  ATTTAGTCTGCACAGGTGAGAGTCTGCACCACAGAAGCTGACAGCTTCTG  850
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ATTTAGTCTGCACAGGTGAGAGTCTGCA-CACAGAAGCTGACAGCTTCTG  849

seq1  GGAACTGCCAAAGCAACACAGCTTCTGAGAAAGGCCCCGTTTTGGGCCTT  900
      ||||||| |||||| |||||||||||||||| |  ||||||||||||  |
seq2  GGAACTG-CAAAGC-ACACAGCTTCTGAGAATG--CCCGTTTTGGGCTCT  895

seq1  CTTCTTCGACCAGGAGGAGGTCCGAAAACAAGATATCTGCGCACCTTCCC  950
      |    |||||      |||   ||||||||||||||||||||||  | ||
seq2  C----TCGAC-----AGAGAGTCGAAAACAAGATATCTGCGCAC--TTCC  934

seq1  TGTAAGAGAGCTTGCCAGCAGAGAGTGCTCTGAGCACTGAAACTCAGAGG  1000
      ||| ||| ||||   ||||||| |||||||||||||||||||||||||||
seq2  TGT-AGA-AGCT--GCAGCAGA-AGTGCTCTGAGCACTGAAACTCAGAGG  979

seq1  AGAGAATCTGTCTCCCAGGTCTGCTGATAGACG  1033
      | |||||||||||||   |||||||||| ||||
seq2  AAAGAATCTGTCTCC--AGTCTGCTGAT-GACG  1009

seq1: chr15_98499200_98499414
seq2: B6Ng01-046G03.g_470_682 (reverse)

seq1  TCTTTTTTTTTTTTTTTTTTTTTTTAAATATTTATTTATTTATTTATTTA  50
        | ||||||||||||||  | ||||  ||||||||||||||||||||||
seq2  --TCTTTTTTTTTTTTTTAATATTTATTTATTTATTTATTTATTTATTTA  48

seq1  TTTATTATATGTAAGTACACTGTAGCTGTCTTCAGACACTCCAGAAGAGA  100
      ||||||||||||||| ||||||||||||||||||||||||||||||||| 
seq2  TTTATTATATGTAAGCACACTGTAGCTGTCTTCAGACACTCCAGAAGAGG  98

seq1  GTATCAGATTTTATTTCAGATGGTTATGAGCCACCATGTGGTTGCTGGGA  150
      || |||||| | ||| | | ||||| ||||||||||||||||||||||||
seq2  GTGTCAGATCTCATTACGGGTGGTTGTGAGCCACCATGTGGTTGCTGGGA  148

seq1  TTTGAACTCAGGATCTTTGGAAGAGCAGTCGGTGCTCTTAACCACTGAGC  200
      ||||||||||||| |||  ||||||||||||| |||||||||| ||||||
seq2  TTTGAACTCAGGACCTTCAGAAGAGCAGTCGGCGCTCTTAACCGCTGAGC  198

seq1  CATCTCACCAGCCCC  215
      |||||||||||||||
seq2  CATCTCACCAGCCCC  213