BAC Information

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BAC

Clone NameB6Ng01-046J07
Chromosome11 (Build37)
Map Location 78,946,722 - 79,100,606
singlet/doubletdoublet
Overlap geneKsr1, LOC100042697, Wsb1
Upstream geneBC017647, LOC100043525, Traf4, Nek8, Tlcd1, Rpl23a, Rab34, 4933404M19Rik, Supt6h, Sdf2, 2610507B11Rik, BC030499, LOC100043544, LOC100042648, Spag5, Aldoc, Pigs, Unc119, Foxn1, OTTMUSG00000000132, Slc13a2, Slc46a1, A830091I15Rik, Vtn, Og9x, AI316787, Poldip2, Tnfaip1, Ift20, Tmem97, Nlk, LOC100043570, LOC100042674, 1810009O10Rik, 1810012P15Rik, Nos2, Lgals9
Downstream geneNf1, Omg, Evi2b, Evi2a, Rab11fip4, OTTMUSG00000000185, LOC432584, Utp6, ENSMUSG00000072631, Suz12, Crlf3, Atad5, 1110002N22Rik, Centa2, Rnf135, Rhot1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-046J07.bB6Ng01-046J07.g
ACCDH871698DH871699
length1,000443
definitionDH871698|Mus musculus domesticus DNA, BAC clone: B6Ng01-046J07, 5' end.DH871699|Mus musculus domesticus DNA, BAC clone: B6Ng01-046J07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,946,722 - 78,947,731)(79,100,158 - 79,100,606)
sequence
gaattctagaaacaactgaaatgtccaaaaccagcaaaaacatctggcag
gtgacagacagcacaactgcacgcggtatcacatgacagttaaaacgaca
gaaccgaaggtaacagagaacagtggcgtgctttaaaataatgccaacta
agtagaagccaggcctggagacttagacctgaaatctcagctacactgga
gacctcagctcatgagttcaaggcctgcctgggctacagaataagttgaa
ggatcagcctgggtagctgaataagacccaatctcaaaacgtaaaaagtg
aaaagacaacaacaggcccaatgtaacccagtggcagggcgcctgtctgt
caggtgtgaggccctaggttcaatccccaagtctgcaaaagggttcattg
atgctaagcaagaaaatgtgtgtatgcattgaatttcttcttaaacacta
gattctagtccacacatcctctgaaccctatgttcttacagagtccaaaa
tagattctgcgttcccttatctactgaggaaaaaaaaatgacagagaact
gagcaacttgcctaagatcagagctagcaaggagtcaggaaatgactctg
tcacactggccccacagcccatacatacataccctatgtcctcagagtgg
cccttcccatgaggctacattgtacctgtgcctgagaagccaagcccaga
aacatccaatagccaacaaaggtgacacagcacctgaaaaccaaagaatg
cagcagaaacctatacgaccagaagcagaccactgctgccgtccagagac
cccagagaaaaagcactcaaagaacaagcagcaagaccaggcttctggag
aagcagtggccaaggaagcagctttggtgtcaggagctcagccagtctgg
atcagcagagatcggtagggtcgcatcgctgcactctgagcagctagaca
ttcatctatttatgacacagatagaggaaagtacgaaaatacacctgagc

tgacggcagccgggcatgatggcactcgcctttaatcccagcacttggga
ggcagaggcaggcggatttctgagttcaaggccagcctggtctacagaat
gagttccaggacagccagggctatacagagaaaccctgtctcgaaaaaca
acaaaacaaaacaaaacaaaaaacaaaaaaaaaaaaaaaaaagaattccg
acggtggaagcgaggtgatttttgggtaaagtgagagtagagagagtcct
ctttccaacccttagggcagtggaagactagttgtgcagaatgtaaagac
aggcaggtggagtctgctgggggtgggttcagtgttctagtaggcttgtt
cttactccccatttgtagcgtccctctctgcctccggaagtgctttccta
tttgctgcctcttactggcccaccaggaaagagaagtcctcgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_78946722_78947731
seq2: B6Ng01-046J07.b_43_1042

seq1  GAATTCTAGAAACAACTGAAATGTCCAAAACCAGCAAAAACATCTGGCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGAAACAACTGAAATGTCCAAAACCAGCAAAAACATCTGGCAG  50

seq1  GTGACAGACAGCACAACTGCACGCGGTATCACATGACAGTTAAAACGACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACAGACAGCACAACTGCACGCGGTATCACATGACAGTTAAAACGACA  100

seq1  GAACCGAAGGTAACAGAGAACAGTGGCGTGCTTTAAAATAATGCCAACTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCGAAGGTAACAGAGAACAGTGGCGTGCTTTAAAATAATGCCAACTA  150

seq1  AGTAGAAGCCAGGCCTGGAGACTTAGACCTGAAATCTCAGCTACACTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGAAGCCAGGCCTGGAGACTTAGACCTGAAATCTCAGCTACACTGGA  200

seq1  GACCTCAGCTCATGAGTTCAAGGCCTGCCTGGGCTACAGAATAAGTTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCAGCTCATGAGTTCAAGGCCTGCCTGGGCTACAGAATAAGTTGAA  250

seq1  GGATCAGCCTGGGTAGCTGAATAAGACCCAATCTCAAAACGTAAAAAGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCAGCCTGGGTAGCTGAATAAGACCCAATCTCAAAACGTAAAAAGTG  300

seq1  AAAAGACAACAACAGGCCCAATGTAACCCAGTGGCAGGGCGCCTGTCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGACAACAACAGGCCCAATGTAACCCAGTGGCAGGGCGCCTGTCTGT  350

seq1  CAGGTGTGAGGCCCTAGGTTCAATCCCCAAGTCTGCAAAAGGGTTCATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGTGAGGCCCTAGGTTCAATCCCCAAGTCTGCAAAAGGGTTCATTG  400

seq1  ATGCTAAGCAAGAAAATGTGTGTATGCATTGAATTTCTTCTTAAACACTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTAAGCAAGAAAATGTGTGTATGCATTGAATTTCTTCTTAAACACTA  450

seq1  GATTCTAGTCCACACATCCTCTGAACCCTATGTTCTTACAGAGTCCAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTAGTCCACACATCCTCTGAACCCTATGTTCTTACAGAGTCCAAAA  500

seq1  TAGATTCTGCGTTCCCTTATCTACTGAGGAAAAAAAAATGACAGAGAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTCTGCGTTCCCTTATCTACTGAGGAAAAAAAAATGACAGAGAACT  550

seq1  GAGCAACTTGCCTAAGATCAGAGCTAGCAAGGAGTCAGGAAATGACTCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAACTTGCCTAAGATCAGAGCTAGCAAGGAGTCAGGAAATGACTCTG  600

seq1  TCACACTGGCCCCACAGCCCATACATACATACCCTATGTCCTCAGAGTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACTGGCCCCACAGCCCATACATACATACCCTATGTCCTCAGAGTGG  650

seq1  CCCTTCCCATGAGGCTACATTGTACCTGTGCCTGAGAAGCCAAGCCCAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCCCATGAGGCTACATTGTACCTGTGCCTGAGAAGCCAAGCCCAGA  700

seq1  AACATCCAATAGCCAACAAAGGTGACACAGCACCTGAAAACCAAAGAATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCCAATAGCCAACAAAGGTGACACAGCACCTGAAAACCAAAGAATG  750

seq1  CAGCAGAAACCTATACGACCAGAAGCAGACCACTGCTGCCGTCCAGAGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGAAACCTATACGACCAGAAGCAGACCACTGCTGCCGTCCAGAGAC  800

seq1  CCCAGAGAAAAAGCACTCAAAGAACAAGCAGCAAGACCAGGCTTCTGGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAGAAAAAGCACTCAAAGAACAAGCAGCAAGACCAGGCTTCTGGAG  850

seq1  AAGCAGTGGCCAAGGAAGCAGCTTTGGTGTACAGGAGCTCAGCCAGTCTG  900
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AAGCAGTGGCCAAGGAAGCAGCTTTGGTGT-CAGGAGCTCAGCCAGTCTG  899

seq1  GATCAGCAGAGATCGGTAGGGGTCGGCATCCGCCTGCCACTCTGAGCAGC  950
      |||||||||||||||||| ||||| |||||   ||| |||||||||||||
seq2  GATCAGCAGAGATCGGTA-GGGTC-GCATC--GCTG-CACTCTGAGCAGC  944

seq1  CAAGGACATTCATCTATCTAATGACACAGATAGAGGAAAAGTACGAAAAT  1000
       |  ||||||||||||| | |||||||||||||||| |||||||||||||
seq2  TA--GACATTCATCTAT-TTATGACACAGATAGAGG-AAAGTACGAAAAT  990

seq1  ACACCTGAGC  1010
      ||||||||||
seq2  ACACCTGAGC  1000

seq1: chr11_79100158_79100606
seq2: B6Ng01-046J07.g_70_518 (reverse)

seq1  CCGAGGACTTCTCTTTCCTGGTGGGCCAGTACGAGGCAGCAAATAGGAAA  50
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CCGAGGACTTCTCTTTCCTGGTGGGCCAGTAAGAGGCAGCAAATAGGAAA  50

seq1  GCACTTCCGGAGGCAGCGAGGGACGCTACAACTGGGGAGTAAGAGCAAGC  100
      |||||||||||||||| |||||||||||||| |||||||||||| |||||
seq2  GCACTTCCGGAGGCAGAGAGGGACGCTACAAATGGGGAGTAAGAACAAGC  100

seq1  CTACTAGAACACTGAACCCACCCCCAGCAGACTCCACCTGCCTGTCTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTAGAACACTGAACCCACCCCCAGCAGACTCCACCTGCCTGTCTTTA  150

seq1  CATTCTGCACATCTAGTCTTCCACTGCCCTAAGGGTTGGAAAGAGGACTC  200
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CATTCTGCACAACTAGTCTTCCACTGCCCTAAGGGTTGGAAAGAGGACTC  200

seq1  TCTCTACTCTCACTTTACCCAAAAATCACCTCGCTTCTGCCGTCGGAATT  250
      |||||||||||||||||||||||||||||||||||||  |||||||||||
seq2  TCTCTACTCTCACTTTACCCAAAAATCACCTCGCTTCCACCGTCGGAATT  250

seq1  CTTTTTTTTTTTTTTTTTTGTTTTTTGTTTTGTTTTGTTTTGTTGTTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTTTTTTTTTTTTTGTTTTTTGTTTTGTTTTGTTTTGTTGTTTTT  300

seq1  CGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCATTCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCATTCTGT  350

seq1  AGACCAGGCTGGCCTTGAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAGGCTGGCCTTGAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAG  400

seq1  TGCTGGGATTAAAGGCGAGTGCCATCATGCCCGGCTGCCGTCTGAATTC  449
      |||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TGCTGGGATTAAAGGCGAGTGCCATCATGCCCGGCTGCCGTCAGAATTC  449