BAC Information

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BAC

Clone NameB6Ng01-046J18
Chromosome11 (Build37)
Map Location 101,517,344 - 101,659,184
singlet/doubletdoublet
Overlap geneArl4d, LOC100038842, Dhx8, Etv4
Upstream geneD11Lgp2e, Gcn5l2, Hspb9, Rab5c, LOC380728, Hcrt, Ghdc, Stat5b, Stat5a, Stat3, Ptrf, Atp6v0a1, Naglu, Hsd17b1, Coasy, Mlx, Psmc3ip, 1300010M03Rik, Tubg1, Tubg2, Plekhh3, Ccr10, Cntnap1, Ezh1, Ramp2, Vps25, Wnk4, Ccdc56, Cntd1, Becn1, Psme3, Aoc2, Aoc3, LOC629949, G6pc, Aarsd1, 1700113I22Rik, Rundc1, Rpl27, Ifi35, Vat1, Rnd2, Brca1, Nbr1, Tmem106a, LOC667306, Rdm1
Downstream geneMeox1, LOC194960, Sost, Dusp3, 1700006E09Rik, Mpp3, Cd300lg, Mpp2, Ppy, Pyy, LOC100040687, LOC666411, Nags, Tmem101, Lsm12, G6pc3, Hdac5, BC030867, Asb16, 2010008E23Rik, Ubtf, Slc4a1, Rap2ip, Slc25a39, Grn, BC025575, Itga2b, Mdk-ps1, LOC100040792, Fzd2, 2810433D01Rik, Psmb5-ps, Gm1564, LOC100042456, Ccdc43, Adam11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-046J18.bB6Ng01-046J18.g
ACCDH871719DH871720
length1,113534
definitionDH871719|Mus musculus domesticus DNA, BAC clone: B6Ng01-046J18, 5' end.DH871720|Mus musculus domesticus DNA, BAC clone: B6Ng01-046J18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,658,062 - 101,659,184)(101,517,344 - 101,517,881)
sequence
gaattcaccagctggctagattggtgagctggtgagcaccagttatcctc
ctcccagagatgggcttaagagtgctccctggccaggcagtggtgatgca
cgcctttaatcccagcacttgggaagcaggggcaggtggatttctgagtt
caaggccagcctggtctacagagtaaacttcaggacagccagggctacac
agagaaaccctgtcttggaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagg
agaaaaagcaagcaagcaagcaagcaaactctctggggatctggactcag
gtcttcatgctgattcagcaaatatcttacccacttggcccctctcccta
accctgaggctcacccttctggctgcactagcactaacttttagaaccag
agctcctgacaaaagcttgcttcactgcctcccggaggccagcagaggtc
cagccaaggctagtcaggagaacccaggtgtgcatctacgaagagaaatg
actcctcttcctcttgcccttacttactaacagtgtttgaggacccaggg
ggcaatcacaagctgacctggaatctcaggtaggaaccagctcagactgc
tctcaagaaaatcctactgcctgagttctgggacaatatcctaagccact
ggtatgtctaaagctaggtaaggagacctgcagtttctctctctgctcta
cagccagccaacaaatgagagatcacaaagacaagatgccgcacagaaac
tcctaagacaggcatcccaaaggttttcaaagtcctgtctcctccctccc
attgtcccttccatacctccctggcgtcttcccttttccttctgcatacc
agccttggggctttgggtcctgatgatattttctcaggctgggatgactt
gctcctgtcctcactccagtctggtctatcaacgcccaagtcattcaact
cctcaaaagttctctgtgatctttcaggaaaagaagaagctctttctgtc
tctccactggaacactcgagctcaggcctcctaagctgtaatcaagctag
gcttcggaaatcatatcctccctgggtggtaaggtggctgaatcccttcc
cagctggtggcat
tctctgtagatcaggctggctttgaactcaaatcctcttgcctctacctc
tctggtgctggcattaaaggggtgtgccaccaataacttttaaagcttaa
tatttactatgcttggaactgaagaggtggctcagcagtcactggctgct
cttctagagctcctgagttcgattcccagcaaccacacgtctgtaatgag
atcagatgccctcttctgtaatgcaggtgtatatgcagataaaatattca
tataaataacaaatatatctttaagaaagtactctgctgagctgggtatg
gtggggcacgtctttaatcccagcacttgggaggcagaggccagcctggt
ctacaaagtgagttccaggacagccagggctacacaagagaaaccctgtg
tcaaaaaaactataaaccaaagttggaagtccaaatattacgggcttttg
gttggtttaatcatttgcttggtcttgtacaattttaacaaaacttgttt
attaaagataaaaaggtatgccaggcagggtgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_101658062_101659184
seq2: B6Ng01-046J18.b_46_1158 (reverse)

seq1  ATGCCACCCAGCTGGGAAGGGACTCAGCCAACCTACCAACCCAAGGGAGG  50
      |||||| ||||||||||||||| ||||||| | |||||  || ||||| |
seq2  ATGCCA-CCAGCTGGGAAGGGATTCAGCCACCTTACCA--CCCAGGGA-G  46

seq1  GATATGATTTCAGAAGCCTAAGCCTTGATTACAGCCTAGGGAGGCCTGAG  100
      ||||||||||| ||||||||   |||||||||||| || |||||||||||
seq2  GATATGATTTCCGAAGCCTA--GCTTGATTACAGCTTA-GGAGGCCTGAG  93

seq1  CTCGAGTGTTCCAAGTGGAGAGACAGAAAGAGCTTC-TCTTTTCCTGGAA  149
      |||||||||||| ||||||||||||||||||||||| ||||||||| |||
seq2  CTCGAGTGTTCC-AGTGGAGAGACAGAAAGAGCTTCTTCTTTTCCT-GAA  141

seq1  AGATCACAGAAGAACTTTTGGAGGAGGTGGAATGACTTGGGCGTTGATAG  199
      ||||||||| ||||||||| ||||| || |||||||||||||||||||||
seq2  AGATCACAG-AGAACTTTT-GAGGA-GTTGAATGACTTGGGCGTTGATAG  188

seq1  ACCAGACTGGAGTGGGGACAGGGGCAAGTCATCCCAGCCTGAGAAAATAT  249
      |||||||||||||| ||||||| |||||||||||||||||||||||||||
seq2  ACCAGACTGGAGTGAGGACAGGAGCAAGTCATCCCAGCCTGAGAAAATAT  238

seq1  CATCAGGA-CCAAAGCCCCAAGGCTGGTATGCAGAAGGAAAAGGGAAGAC  298
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGGACCCAAAGCCCCAAGGCTGGTATGCAGAAGGAAAAGGGAAGAC  288

seq1  GCCAGGGAGGTATGGAAGGGACAATGGGAGGGAGGAGACAGGACTTTGAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGGAGGTATGGAAGGGACAATGGGAGGGAGGAGACAGGACTTTGAA  338

seq1  AACCTTTGGGATGCCTGTCTTAGGAGTTTCTGTGCGGCATCTTGTCTTTG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTTGGGATGCCTGTCTTAGGAGTTTCTGTGCGGCATCTTGTCTTTG  388

seq1  TGATCTCTCATTTGTTGGCTGGCTGTAGAGCAGAGAGAGAAACTGCAGGT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTCTCATTTGTTGGCTGGCTGTAGAGCAGAGAGAGAAACTGCAGGT  438

seq1  CTCCTTACCTAGCTTTAGACATACCAGTGGCTTAGGATATTGTCCCAGAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTACCTAGCTTTAGACATACCAGTGGCTTAGGATATTGTCCCAGAA  488

seq1  CTCAGGCAGTAGGATTTTCTTGAGAGCAGTCTGAGCTGGTTCCTACCTGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGCAGTAGGATTTTCTTGAGAGCAGTCTGAGCTGGTTCCTACCTGA  538

seq1  GATTCCAGGTCAGCTTGTGATTGCCCCCTGGGTCCTCAAACACTGTTAGT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCAGGTCAGCTTGTGATTGCCCCCTGGGTCCTCAAACACTGTTAGT  588

seq1  AAGTAAGGGCAAGAGGAAGAGGAGTCATTTCTCTTCGTAGATGCACACCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAGGGCAAGAGGAAGAGGAGTCATTTCTCTTCGTAGATGCACACCT  638

seq1  GGGTTCTCCTGACTAGCCTTGGCTGGACCTCTGCTGGCCTCCGGGAGGCA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCTCCTGACTAGCCTTGGCTGGACCTCTGCTGGCCTCCGGGAGGCA  688

seq1  GTGAAGCAAGCTTTTGTCAGGAGCTCTGGTTCTAAAAGTTAGTGCTAGTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGCAAGCTTTTGTCAGGAGCTCTGGTTCTAAAAGTTAGTGCTAGTG  738

seq1  CAGCCAGAAGGGTGAGCCTCAGGGTTAGGGAGAGGGGCCAAGTGGGTAAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAGAAGGGTGAGCCTCAGGGTTAGGGAGAGGGGCCAAGTGGGTAAG  788

seq1  ATATTTGCTGAATCAGCATGAAGACCTGAGTCCAGATCCCCAGAGAGTTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTGCTGAATCAGCATGAAGACCTGAGTCCAGATCCCCAGAGAGTTT  838

seq1  GCTTGCTTGCTTGCTTGCTTTTTCTCCTTTTTTTTTTTTTTTTTTTTTTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCTTGCTTGCTTGCTTTTTCTCCTTTTTTTTTTTTTTTTTTTTTTT  888

seq1  TTTTTTTCCAAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGAAGTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCCAAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGAAGTT  938

seq1  TACTCTGTAGACCAGGCTGGCCTTGAACTCAGAAATCCACCTGCCCCTGC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTGTAGACCAGGCTGGCCTTGAACTCAGAAATCCACCTGCCCCTGC  988

seq1  TTCCCAAGTGCTGGGATTAAAGGCGTGCATCACCACTGCCTGGCCAGGGA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAAGTGCTGGGATTAAAGGCGTGCATCACCACTGCCTGGCCAGGGA  1038

seq1  GCACTCTTAAGCCCATCTCTGGGAGGAGGATAACTGGTGCTCACCAGCTC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTCTTAAGCCCATCTCTGGGAGGAGGATAACTGGTGCTCACCAGCTC  1088

seq1  ACCAATCTAGCCAGCTGGTGAATTC  1123
      |||||||||||||||||||||||||
seq2  ACCAATCTAGCCAGCTGGTGAATTC  1113

seq1: chr11_101517344_101517881
seq2: B6Ng01-046J18.g_68_607

seq1  GAATTCTCTCTGTAGATCAGGCTGGCTTTGAACTCAAATCCTCTTGCCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCTGTAGATCAGGCTGGCTTTGAACTCAAATCCTCTTGCCTC  50

seq1  TACCTCTCTGGTGCTGGCATTAAAGGGGTGTGCCACCAATAACTTTTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCTCTGGTGCTGGCATTAAAGGGGTGTGCCACCAATAACTTTTAAA  100

seq1  GCTTAATATTTACTATGCTTGGAACTGAAGAGGTGGCTCAGCAGTCACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAATATTTACTATGCTTGGAACTGAAGAGGTGGCTCAGCAGTCACTG  150

seq1  GCTGCTCTTCTAGAGCTCCTGAGTTCGATTCCCAGCAACCACACGTCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTCTTCTAGAGCTCCTGAGTTCGATTCCCAGCAACCACACGTCTGT  200

seq1  AATGAGATCAGATGCCCTCTTCTGTAATGCAGGTGTATATGCAGATAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGATCAGATGCCCTCTTCTGTAATGCAGGTGTATATGCAGATAAAA  250

seq1  TATTCATATAAATAACAAATATATCTTTAAGAAAGTACTCTGCTGAGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCATATAAATAACAAATATATCTTTAAGAAAGTACTCTGCTGAGCTG  300

seq1  GGTATGGTGGGGCACGTCTTTAATCCCAGCACTTGGGAGGCAGAGGCCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATGGTGGGGCACGTCTTTAATCCCAGCACTTGGGAGGCAGAGGCCAG  350

seq1  CCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTACACAAGAGAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTACACAAGAGAAAC  400

seq1  CCTGTGTCAAAAAAACTATAAACCAAAGTTGGAAGTCCAAATATTACGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGTCAAAAAAACTATAAACCAAAGTTGGAAGTCCAAATATTACGGG  450

seq1  CTTTTGGTTGGTTTAGTCA-TTGCTTGGTCTTGTACAATTTTAACAAAAC  499
      ||||||||||||||| ||| ||||||||||||||||||||||||||||||
seq2  CTTTTGGTTGGTTTAATCATTTGCTTGGTCTTGTACAATTTTAACAAAAC  500

seq1  TTGTTTATTAAAGATAAAAGGTCATGCCAGGCA-GGTGCT  538
      ||||||||||||||||||| |  |||||||||| ||||||
seq2  TTGTTTATTAAAGATAAAAAGGTATGCCAGGCAGGGTGCT  540