BAC Information

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BAC

Clone NameB6Ng01-046P17
Chromosome11 (Build37)
Map Location 107,012,441 - 107,147,189
singlet/doubletdoublet
Overlap geneNol11, LOC671692, Pitpnc1
Upstream geneMap3k3, Limd2, 2610019A05Rik, 2610204L23Rik, Ddx42, Ftsj3, Psmc5, Smarcd2, Tcam1, Gh, Cd79b, Scn4a, 2310007L24Rik, Icam2, Ern1, LOC100041277, Tex2, Pecam1, Gm885, Polg2, Ddx5, Ccdc45, Smurf2, LOC666873, Kpna2, 1810010H24Rik, Bptf, LOC100042899
Downstream genePsmd12, A830035A12Rik, Helz, Cacng1, Cacng4, Cacng5, Prkca
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-046P17.bB6Ng01-046P17.g
ACCDH871973DH871974
length206541
definitionDH871973|Mus musculus domesticus DNA, BAC clone: B6Ng01-046P17, 5' end.DH871974|Mus musculus domesticus DNA, BAC clone: B6Ng01-046P17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,146,984 - 107,147,189)(107,012,441 - 107,012,983)
sequence
gaattcatgagagtgtatcggccagagcatcccagatgacaaacgaggag
acatagctcaggtcagaggactcaggagaggatccagtgcgatgactcat
acccagtcaatggtggttctgccctttgacatcagtcatgggaacggctg
cagagttaggctcttgcttgcagctttgtgaatggtgacagtgatggggg
gggggg
actctgtagaccaggctgggctccaactccgagatttactgcctcctgag
tgctgggattaaaaaagcatctgacaccaccagaccttgttggtctcaca
ctagcaatggagttaaggatggtcttggacccgaggttttcaggcttcac
ctgtcagtgccttctttctttctttctttctttctttctttctttctttc
tttctttctttctttctttctttcttccttccttccttccttccttactt
ccttccttccttcctttctttcgttggtttggttttttgtttgttttttg
gtgtttttttctttctttcttttttttcttttcttttttttttttttttt
ttttggttttttgagacagggtttctctgtatagccccggctgtcctgga
cctcactttgtagaccaggctggcctcgaactcagaaatccgcctgcctc
tgcctcccgagtgctgggattaaaggcgtgcgacaccacgcccggctttg
gtgttttttcgagacagggtttctctgtgtagccctggctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_107146984_107147189
seq2: B6Ng01-046P17.b_42_247 (reverse)

seq1  CCCCCCCCCCCATCACTGTCACCATTCACAAAGCTGCAAGCAAGAGCCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCCCCATCACTGTCACCATTCACAAAGCTGCAAGCAAGAGCCTA  50

seq1  ACTCTGCAGCCGTTCCCATGACTGATGTCAAAGGGCAGAACCACCATTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGCAGCCGTTCCCATGACTGATGTCAAAGGGCAGAACCACCATTGA  100

seq1  CTGGGTATGAGTCATCGCACTGGATCCTCTCCTGAGTCCTCTGACCTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTATGAGTCATCGCACTGGATCCTCTCCTGAGTCCTCTGACCTGAG  150

seq1  CTATGTCTCCTCGTTTGTCATCTGGGATGCTCTGGCCGATACACTCTCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTCTCCTCGTTTGTCATCTGGGATGCTCTGGCCGATACACTCTCAT  200

seq1  GAATTC  206
      ||||||
seq2  GAATTC  206

seq1: chr11_107012441_107012983
seq2: B6Ng01-046P17.g_67_613

seq1  GAATTCACTCTGTAGACCAGGCTGGGCTCCAACTCCGAGATTTACTGCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTGTAGACCAGGCTGGGCTCCAACTCCGAGATTTACTGCCT  50

seq1  CCTGAGTGCTGGGATTAAAAAAGCATCTGACACCACCAGACCTTGTTGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGTGCTGGGATTAAAAAAGCATCTGACACCACCAGACCTTGTTGGT  100

seq1  CTCACACTAGCAATGGAGTTAAGGATGGTCTTGGACCCGAGGTTTTCAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACACTAGCAATGGAGTTAAGGATGGTCTTGGACCCGAGGTTTTCAGG  150

seq1  CTTCACCTGTCAGTGCC----TTCTTTCTTTCTTTCTTTCTTTCTTTCTT  196
      |||||||||||||||||    |||||||||||||||||||||||||||||
seq2  CTTCACCTGTCAGTGCCTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTT  200

seq1  TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTCCTTCCTTCCTTCCTTCC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTCCTTCCTTCCTTCCTTCC  250

seq1  TTCCTTCCTTCCTTCCTTCCTTTCTTTCGTTGGTTTGGTTTTTTGTTTGT  296
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTCCTTCCTTCCTTCCTTTCTTTCGTTGGTTTGGTTTTTTGTTTGT  300

seq1  TTTTTGGTGTTTTTTTCTTTCTTTCTTTTTTTTCTTTTCTTTTTTTTTTT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGGTGTTTTTTTCTTTCTTTCTTTTTTTTCTTTTCTTTTTTTTTTT  350

seq1  TTTTTTTTTTGGGTTTTTGAGACAGGGTTTCTCTGTATAGCCCCGGCTGT  396
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTGGTTTTTTGAGACAGGGTTTCTCTGTATAGCCCCGGCTGT  400

seq1  CCTGGACCTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGACCTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCC  450

seq1  TGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGCGACACCACGCCCG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGCGACACCACGCCCG  500

seq1  GCTTTGGTGTTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTG  543
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGGTGTTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTG  547