BAC Information

Click to search

BAC

Clone NameB6Ng01-048F10
Chromosome11 (Build37)
Map Location 84,369,042 - 84,544,583
singlet/doubletdoublet
Overlap genenone
Upstream geneCcl9, Ccl6, LOC194905, Ccl3, Ccl4, OTTMUSG00000000971, Expi, 1100001G20Rik, 2700008B19Rik, LOC676191, Tcf2, Ddx52, Ap1gbp1, Dusp14, Tada2l, OTTMUSG00000000997, Acaca, LOC100043671, Aatf, Lhx1
Downstream geneMrm1, BC022224, Ggnbp2, Pigw, Znhit3, Car4, Usp32, LOC668794, LOC234848, 1700125H20Rik, Appbp2, D630032N06Rik, Ppm1d, Bcas3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-048F10.bB6Ng01-048F10.g
ACCDH872927DH872928
length1,087842
definitionDH872927|Mus musculus domesticus DNA, BAC clone: B6Ng01-048F10, 5' end.DH872928|Mus musculus domesticus DNA, BAC clone: B6Ng01-048F10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,369,042 - 84,370,158)(84,543,730 - 84,544,583)
sequence
gaattccaggctgcacttctctggaagcctttctagacacccaccttgtt
tctgtaggagagcaagctacttctgtcctgtgggctacggtggctctcaa
actgtggcaatctatgagtgactcttctgtctcctttgttgggctgtgat
gagcttgtctctttcatgagaccttaactgctcaatacactgccagaggc
caagcacaaatgtcaccctcttctgctttgggtttgtttttgttttgttt
tgttttgttttgtttttctttgatttgttttgcataccttttaggccttg
catatgtgctacatcctcagagatgtttttttccggattcccctatctag
cagaatccactgtgccacctgtgttttcatgatgccttgcatactgcttt
ataatagcctgctgttattgacctacaactgcaggaagactgctcagagt
cagacaacaatcaatttaaccactcaacagaggcaagagactcagcggaa
gtaatttgagactgagagtctgctgtgtagccttaggtgaatagtcaacc
attctggtttccatccttttaaccaggtcccgtgtgttgaagaatctgaa
accctgcacatatcagtgaatagtttcccatcacctgttcttcacctgca
aaatgaggattattcatttaaaagattccttgtgccgggtgtggtggccc
catgcctttaatcccagcacttgggaggcagaggcaggtggatttctgag
ttcgaggccagcctggtcttacagagtgagttccaggacagccagggcta
tacagagaaaccctgtcttggaaaaacaaaaccaaaaacaaaaaccaaaa
accaaaaacacacacaaaaaaaggattcttgtagtctgtaacaggcaggc
tctcatggagagaaggagtctgagagtcctggtgcacactggctctctgg
taggtgacatctagttgttggtgtcgatctgatgatagagctcacttcta
cgagcagcacttggcttcagatatcctgccttgagagagctcactctctc
acacccacattccaggcacaggtctgtggcatagatc
gaattctttctaatcaggtctgggtaaacttattccactctctggggctc
acattccttgataagatacagaaccttctccatttcccatatctttgcat
caattcatggccacttttggacactatactggaagatgaggacacacaca
cagacacacacagacacacagacacacacacacacagacacacacacaca
cacacacacacagagagagagagagagagagagagagagagagagagaga
gagagagagaagatctgtatgtttgagataaagagtgaggaagatcagtc
agatgtcccaagtgctctaaccaaaatctggcaaacctggcttcagtgtg
gtaaggacagcagaagacaactgaggtaagagatgaagaagaggaggggg
tgaaagctggagtgaagagcaggataaagatggataggggaagggaaaat
agaagatcatggtggataggcaggaaggactacaggagacccgaggaagg
aaggggaaggagggaagccacagaggctggggagggcattggggaggaca
tgggggagggcacagggcgggggagggacagctctgctcttgcaaggggt
gggagattgaatgctgaatcacagcagcagcggggagaggaataagtcat
aaacgcagtgaggcaaggtcaaatatatactgatggctccattgtttcta
cctgtgaggaggaccccgggggagttgcagagatattaacctttcttgcc
agcctttgatggcgagactgtttcagaatcttattgaaaaaacctgtgtg
tggagattgaagagcattgaacctggaatttgatctgaccct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_84369042_84370158
seq2: B6Ng01-048F10.b_46_1132

seq1  GAATTCCAGGCTGCACTTCTCTGGAAGCCTTTCTAGACACCCACCTTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGCTGCACTTCTCTGGAAGCCTTTCTAGACACCCACCTTGTT  50

seq1  TCTGTAGGAGAGCAAGCTACTTCTGTCCTGTGGGCTACGGTGGCTCTCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAGGAGAGCAAGCTACTTCTGTCCTGTGGGCTACGGTGGCTCTCAA  100

seq1  ACTGTGGCAATCTATGAGTGACTCTTCTGTCTCCTTTGTTGGGCTGTGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGGCAATCTATGAGTGACTCTTCTGTCTCCTTTGTTGGGCTGTGAT  150

seq1  GAGCTTGTCTCTTTCATGAGACCTTAACTGCTCAATACACTGCCAGAGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTGTCTCTTTCATGAGACCTTAACTGCTCAATACACTGCCAGAGGC  200

seq1  CAAGCACAAATGTCACCCTCTTCTGCTTTGGGTTTGTTTTTGTTTTGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCACAAATGTCACCCTCTTCTGCTTTGGGTTTGTTTTTGTTTTGTTT  250

seq1  TGTTTTGTTTTGTTTTTCTTTGATTTGTTTTGCATACCTTTTAGGCCTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGTTTTGTTTTTCTTTGATTTGTTTTGCATACCTTTTAGGCCTTG  300

seq1  CATATGTGCTACATCCTCAGAGATGTTTTTTTCCGGATTCCCCTATCTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGTGCTACATCCTCAGAGATGTTTTTTTCCGGATTCCCCTATCTAG  350

seq1  CAGAATCCACTGTGCCACCTGTGTTTTCATGATGCCTTGCATACTGCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATCCACTGTGCCACCTGTGTTTTCATGATGCCTTGCATACTGCTTT  400

seq1  ATAATAGCCTGCTGTTATTGACCTACAACTGCAGGAAGACTGCTCAGAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAGCCTGCTGTTATTGACCTACAACTGCAGGAAGACTGCTCAGAGT  450

seq1  CAGACAACAATCAATTTAACCACTCAACAGAGGCAAGAGACTCAGCGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAACAATCAATTTAACCACTCAACAGAGGCAAGAGACTCAGCGGAA  500

seq1  GTAATTTGAGACTGAGAGTCTGCTGTGTAGCCTTAGGTGAATAGTCAACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTTGAGACTGAGAGTCTGCTGTGTAGCCTTAGGTGAATAGTCAACC  550

seq1  ATTCTGGTTTCCATCCTTTTAACCAGGTCCCGTGTGTTGAAGAATCTGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGGTTTCCATCCTTTTAACCAGGTCCCGTGTGTTGAAGAATCTGAA  600

seq1  ACCCTGCACATATCAGTGAATAGTTTCCCATCACCTGTTCTTCACCTGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGCACATATCAGTGAATAGTTTCCCATCACCTGTTCTTCACCTGCA  650

seq1  AAATGAGGATTATTCATTTAAAAGATTCCTTGTGCCGGGTGTGGTGGCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAGGATTATTCATTTAAAAGATTCCTTGTGCCGGGTGTGGTGGCCC  700

seq1  CATGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTGAG  750

seq1  TTCGAGGCCAGCCTGGTC-TACAGAGTGAGTTCCAGGACAGCCAGGGCTA  799
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TTCGAGGCCAGCCTGGTCTTACAGAGTGAGTTCCAGGACAGCCAGGGCTA  800

seq1  TACAGAGAAACCCTGTCTTGAAAAAACAAAAAACAAAAAACAAAAAAACA  849
      |||||||||||||||||||| ||||||  ||||| ||||||  |||||| 
seq2  TACAGAGAAACCCTGTCTTGGAAAAAC--AAAACCAAAAAC--AAAAACC  846

seq1  AAAAAACAAAAAAACAACAACAACAAAAAAAAAGGATTTCTTGTAGTCTT  899
      ||||| |||||| ||       ||| |||||||||| ||||||||||| |
seq2  AAAAACCAAAAACAC-------ACACAAAAAAAGGA-TTCTTGTAGTC-T  887

seq1  GTAACATGGCAGGCTCTCATGGAGAGAAGGAGTCTTGAGAGTCCCTGGTT  949
      |||||| ||||||||||||||||||||||||||| ||||||| ||||| |
seq2  GTAACA-GGCAGGCTCTCATGGAGAGAAGGAGTC-TGAGAGT-CCTGG-T  933

seq1  GCACAACTGGCTTCTCTGGTAGGTGACCATCTAGTTGTTTGTGTCGATCT  999
      |||| |||||| |||||||||||||| |||||||||||| ||||||||||
seq2  GCAC-ACTGGC-TCTCTGGTAGGTGA-CATCTAGTTGTTGGTGTCGATCT  980

seq1  GATGATAAGAAGCTCACTTCTTACGAAGCAAGCCACTCTGCCTTCAGATA  1049
      |||||||   |||||||||| |||| ||||   |||| || |||||||||
seq2  GATGATA--GAGCTCACTTC-TACG-AGCA--GCACT-TGGCTTCAGATA  1023

seq1  TCTCTGCTTTGA-AGAGTCTCACTCTCTCACACACCACATCTCAGGCACA  1098
      || |||| |||| |||| ||||||||||||||| ||||||  ||||||||
seq2  TC-CTGCCTTGAGAGAG-CTCACTCTCTCACAC-CCACATTCCAGGCACA  1070

seq1  GGTTCTGTGGCATAAGATC  1117
      || |||||||||| |||||
seq2  GG-TCTGTGGCAT-AGATC  1087

seq1: chr11_84543730_84544583
seq2: B6Ng01-048F10.g_65_905 (reverse)

seq1  GGGTCAGCTCCAACTCCAGCTTCAATGCCTCTCCAATCT-CACACACAGG  49
      ||||||| || || ||||| ||||||| |||| |||||| ||||||||||
seq2  GGGTCAGATCAAATTCCAGGTTCAATG-CTCTTCAATCTCCACACACAGG  49

seq1  TTCTTTTCCACTATGCATCTGTAACCCGTCTCGCCATCAGAAGGCTGGGC  99
      |  |||| || || |  |||| || | |||||||||||| |||||| |||
seq2  T--TTTTTCAATAAGATTCTG-AAACAGTCTCGCCATCA-AAGGCT-GGC  94

seq1  AGGAAAGGGTTAATATCTCTGCAACCTCCACCGGGGTCCTCCTCACAGGC  149
      | |||| ||||||||||||||||| |||| ||||||||||||||||||| 
seq2  AAGAAA-GGTTAATATCTCTGCAA-CTCCCCCGGGGTCCTCCTCACAGG-  141

seq1  TAGGAAACAATGGAGCCATCAGTCTATATTTGACCTTTGCCCTCACTGCG  199
      || |||||||||||||||||||| |||||||||||||   ||||||||||
seq2  TA-GAAACAATGGAGCCATCAGTATATATTTGACCTT--GCCTCACTGCG  188

seq1  TTTATGACTTATTCCTCTCCCCCGCTGCCTGCTGTGATTCAGCCTTCAAT  249
      |||||||||||||||||| |||||||| ||||||||||||||| ||||||
seq2  TTTATGACTTATTCCTCT-CCCCGCTG-CTGCTGTGATTCAGCATTCAAT  236

seq1  CTCCCACCCCTTGCCAGAGCAGAGCTGTCCCTCCCCCGCCCTGTGCCCTC  299
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CTCCCACCCCTTGCAAGAGCAGAGCTGTCCCTCCCCCGCCCTGTGCCCTC  286

seq1  CCCCATGTCCTCCCCAATGCCCTCCCCAGCCTCTGTGGCTTCCCTCCTTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATGTCCTCCCCAATGCCCTCCCCAGCCTCTGTGGCTTCCCTCCTTC  336

seq1  CCCTTCCTTCCTCGGGTCTCCTGTAGTCCTTCCTGCCTATCCACCATGAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCCTTCCTCGGGTCTCCTGTAGTCCTTCCTGCCTATCCACCATGAT  386

seq1  CTTCTATTTTCCCTTCCCCTATCCATCTTTATCCTGCTCTTCACTCCAGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTATTTTCCCTTCCCCTATCCATCTTTATCCTGCTCTTCACTCCAGC  436

seq1  TTTCACCCCCTCCTCTTCTTCATCTCTTACCTCAGTTGTCTTCTGCTGTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACCCCCTCCTCTTCTTCATCTCTTACCTCAGTTGTCTTCTGCTGTC  486

seq1  CTTACCACACTGAAGCCAGGTTTGCCAGATTTTGGTTAGAGCACTTGGGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACCACACTGAAGCCAGGTTTGCCAGATTTTGGTTAGAGCACTTGGGA  536

seq1  CATCTGACTGATCTTCCTCACTCTTTATCTCAAACATACAGATCTTCTCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGACTGATCTTCCTCACTCTTTATCTCAAACATACAGATCTTCTCT  586

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGT  636

seq1  GTGTGTGTGTGTGTGTGTCTGTGTGTGTGTGTGTCTGTGTGTCTGTGTGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTCTGTGTGTGTGTGTGTCTGTGTGTCTGTGTGT  686

seq1  GTCTGTGTGTGTGTCCTCATCTTCCAGTATAGTGTCCAAAAGTGGCCATG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTGTGTGTGTCCTCATCTTCCAGTATAGTGTCCAAAAGTGGCCATG  736

seq1  AATTGATGCAAAGATATGGGAAATGGAGAAGGTTCTGTATCTTATCAAGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGATGCAAAGATATGGGAAATGGAGAAGGTTCTGTATCTTATCAAGG  786

seq1  AATGTGAGCCCCAGAGAGTGGAATAAGTTTACCCAGACCTGATTAGAAAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGAGCCCCAGAGAGTGGAATAAGTTTACCCAGACCTGATTAGAAAG  836

seq1  AATTC  854
      |||||
seq2  AATTC  841