BAC Information

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BAC

Clone NameB6Ng01-048L20
Chromosome11 (Build37)X (Build37)
Map Location 3,331,767 - 3,332,540159,270,453 - 159,270,837
singlet/doubletsingletsinglet
Overlap geneRnf185
Upstream geneLOC236604, Sfi1, LOC623257, Eif4enif1, Drg1, Patz1, Pik3ip1, Limk2
Downstream gene8430429K09Rik, LOC100041573, Pla2g3, Pib5pa, Selm, Smtn, Map1lc3-5, LOC625608, Tug1, Morc2a, LOC664900, Osbp2, LOC664920, 4921536K21Rik, Dusp18, Slc35e4, Tcn2, LOC100041720, Pes1, Gal3st1, Sec14l4, Sec14l3, 1700020C11Rik, Sec14l2, LOC625729, Rnf215, 4930562D19Rik, Sf3a1, Tbc1d10a, 2410008K03Rik, LOC625760, Osm, Lif, Hormad2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-048L20.bB6Ng01-048L20.g
ACCDH873210DH873211
length794617
definitionDH873210|Mus musculus domesticus DNA, BAC clone: B6Ng01-048L20, 5' end.DH873211|Mus musculus domesticus DNA, BAC clone: B6Ng01-048L20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(3,331,767 - 3,332,540)(159,270,453 - 159,270,837)
sequence
gaattccaatgcaggggggcccagtggcagcatcaatggcactggtgaga
gtggagggcaggacagcacctttgagtgcaacatatgcctggacacagcc
aaggatgctgtcatcagcctgtgtggccacctcttctggtgagtaccctt
cctgccatctctgtggacaccctaccaagtttgaaagcccgtgaccctag
gcagatgtttcactttggacagaagatgtttggggtagatgtctcactca
ttttgattcttgatgctctcagacccaagggacaagaagcttcagtttcc
atcccagctgtactgctgaaggtctgggtaaccttgggcaaatcctgttt
ttaccctggccagcttcccatctcgccagaagtaaggccattttgtgagc
gtgtactgccacttgagcaaggctcgcttgctgtgctgagtctacattca
ggattgcgtggtggttttgagcaaggactgtgcagccagactttgtcttc
tcagatcttgactctgccacttccctagtggatgaccttagacagggagt
gtacatgcattctgtcttattttacagacttatttctattaaatggcccc
taatactgagcatgttgaattaccacatagcgtgtgctggctttgattgt
aattgttctgtattctatgtgtatgttgtgaaatgaccagcaagatcagt
gtcctagtctcagtgcctaagagaccctgctgtctctgagaacttaagtg
aatgtggagtagtggggagttgcccctcttagaatgggaccaaa
gaattccatccgggtggcattcattggctgctgtggccattggctgctgt
ggcgggagaggctggggggaggggaacgcagtgcttctaaggggctttag
tctggacaatgagtcccacacccacccctccctgaaaggctgggcaaggc
atccccgtgtcattctaaagctgctgcctcaggtcctaggaatccttgaa
tttctgcggaggaggggggatgtgggggaaaaaaagaaaagaaaaattca
agatttatttttatcacgattaaaactttcttatatgtacttgtgtgtgt
atgtgcctgtagttagcatgtgcacatgcatgcagatgccctaggaggcg
ataagaaggtgggtgatgagcccggcatgctggcgcacgccttttaatct
cagcacttgggaggcagaggcaggcggatttctgagtttcaaggccagcc
tggtctacaaagtgagttccaggacagccatggctatacagagaaaccct
gttctagaaaaccaaaaatttaaaaatataaaaaaaaggaggtgtgagat
gcccctgaaattttagtaacaggtaattgtgacctgccttggcgcaagtg
ctggggaccctaactgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_3331767_3332540
seq2: B6Ng01-048L20.b_43_814 (reverse)

seq1  CAACTCCCCACTACTCCACATCCACCTAAGTTCTCAGAGACAGCAGGGGT  50
      ||||||||||||||||||||| ||| ||||||||||||||||||| ||||
seq2  CAACTCCCCACTACTCCACATTCACTTAAGTTCTCAGAGACAGCA-GGGT  49

seq1  CTCTTAGGCACTGAGACTAGGACACTGATCTTGCTGCTTCATTTCACAAC  100
      ||||||||||||||||||||||||||||||||||||  ||||||||||||
seq2  CTCTTAGGCACTGAGACTAGGACACTGATCTTGCTG-GTCATTTCACAAC  98

seq1  ATACACATAGAATACAGAACAATTACAATCAAAGCCAGCACACGCTATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACATAGAATACAGAACAATTACAATCAAAGCCAGCACACGCTATGT  148

seq1  GGTAATTCAACATGCTCACTATTTGGGGCCATTTAATAGAAATAAGTCTG  200
      |||||||||||||||||| |||| ||||||||||||||||||||||||||
seq2  GGTAATTCAACATGCTCAGTATTAGGGGCCATTTAATAGAAATAAGTCTG  198

seq1  TAAAATAAGACAGAATGCATGTACACTCCCTGTCTAAGGTCATCCACTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAAGACAGAATGCATGTACACTCCCTGTCTAAGGTCATCCACTAG  248

seq1  GGAAGTGGCAGAGTCAAGATCTGAGAAGACAAAGTCTGGCTGCACAGTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTGGCAGAGTCAAGATCTGAGAAGACAAAGTCTGGCTGCACAGTCC  298

seq1  TTGCTCAAAACCACCACGCAATCCTGAATGTAGACTCAGCACAGCAAGCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCAAAACCACCACGCAATCCTGAATGTAGACTCAGCACAGCAAGCG  348

seq1  AGCCTTGCTCAAGTGGCAGTACACGCTCACAAAATGGCCTTACTTCTGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTGCTCAAGTGGCAGTACACGCTCACAAAATGGCCTTACTTCTGGC  398

seq1  GAGATGGGAAGCTGGCCAGGGTAAAAACAGGATTTGCCCAAGGTTACCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGGGAAGCTGGCCAGGGTAAAAACAGGATTTGCCCAAGGTTACCCA  448

seq1  GACCTTCAGCAGTACAGCTGGGATGGAAACTGAAGCTTCTTGTCCCTTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTCAGCAGTACAGCTGGGATGGAAACTGAAGCTTCTTGTCCCTTGG  498

seq1  GTCTGAGAGCATCAAGAATCAAAATGAGTGAGACATCTACCCCAAACATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGAGAGCATCAAGAATCAAAATGAGTGAGACATCTACCCCAAACATC  548

seq1  TTCTGTCCAAAGTGAAACATCTGCCTAGGGTCACGGGCTTTCAAACTTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTCCAAAGTGAAACATCTGCCTAGGGTCACGGGCTTTCAAACTTGG  598

seq1  TAGGGTGTCCACAGAGATGGCAGGAAGGGTACTCACCAGAAGAGGTGGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGTGTCCACAGAGATGGCAGGAAGGGTACTCACCAGAAGAGGTGGCC  648

seq1  ACACAGGCTGATGACAGCATCCTTGGCTGTGTCCAGGCATATGTTGCACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGGCTGATGACAGCATCCTTGGCTGTGTCCAGGCATATGTTGCACT  698

seq1  CAAAGGTGCTGTCCTGCCCTCCACTCTCACCAGTGCCATTGCTGCTGCCA  750
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CAAAGGTGCTGTCCTGCCCTCCACTCTCACCAGTGCCATTGATGCTGCCA  748

seq1  CTGGGCCCCCCTGCATTGGAATTC  774
      ||||||||||||||||||||||||
seq2  CTGGGCCCCCCTGCATTGGAATTC  772

seq1: chrX_159270453_159270837
seq2: B6Ng01-048L20.g_294_683 (reverse)

seq1  GCAGTTA-GGTTCCTAGCACCTGCGCC-ATGCAGCTCACAATTACCTGTA  48
      ||||||| ||| || ||||| |||||| | |||| |||||||||||||| 
seq2  GCAGTTAGGGTCCCCAGCACTTGCGCCAAGGCAGGTCACAATTACCTGTT  50

seq1  ACTAAAATTTCA-GGGCATCTCACACCTTCTTTTTTTTTTTTTTTTTTTT  97
      |||||||||||| ||||||||||||||| ||||||||| | |||||   |
seq2  ACTAAAATTTCAGGGGCATCTCACACCTCCTTTTTTTTATATTTTTAAAT  100

seq1  TTTTGGTTTTTCTAG-ACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGG  146
      |||||| |||||||| ||||||||||||||||||||| ||||||||||||
seq2  TTTTGG-TTTTCTAGAACAGGGTTTCTCTGTATAGCCATGGCTGTCCTGG  149

seq1  AACTCACTTTGTAGACCAGGCTGGCCTTG-AACTCAGAAATCCGCCTGCC  195
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AACTCACTTTGTAGACCAGGCTGGCCTTGAAACTCAGAAATCCGCCTGCC  199

seq1  TCTGCCTCCCAAGTGCTGAGATT-AAAGGCGTGCGCCAGCATGCCGGGCT  244
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TCTGCCTCCCAAGTGCTGAGATTAAAAGGCGTGCGCCAGCATGCCGGGCT  249

seq1  CATCACCCACCTTCTTATCGCCTCCTAGGGCATCTGCATGCATGTGCACA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACCCACCTTCTTATCGCCTCCTAGGGCATCTGCATGCATGTGCACA  299

seq1  TGCTAACTACAGGCACATACACACACAAGTACATATAAGAAAGTTTTAAT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAACTACAGGCACATACACACACAAGTACATATAAGAAAGTTTTAAT  349

seq1  CGTGATAAAAATAAATCTTGAATTTTTCTTTTCTTTTTTTC  385
      |||||||||||||||||||||||||||||||||||||||||
seq2  CGTGATAAAAATAAATCTTGAATTTTTCTTTTCTTTTTTTC  390