BAC Information

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BAC

Clone NameB6Ng01-048L23
Chromosome11 (Build37)
Map Location 79,348,294 - 79,515,141
singlet/doubletdoublet
Overlap geneNf1, Rab11fip4, OTTMUSG00000000185
Upstream geneTnfaip1, Ift20, Tmem97, Nlk, LOC100043570, LOC100042674, 1810009O10Rik, 1810012P15Rik, Nos2, Lgals9, Ksr1, LOC100042697, Wsb1, Omg, Evi2b, Evi2a
Downstream geneLOC432584, Utp6, ENSMUSG00000072631, Suz12, Crlf3, Atad5, 1110002N22Rik, Centa2, Rnf135, Rhot1, Rhbdl3, 5730455P16Rik, Zfp207, LOC100043601, LOC100042726, Psmd11, Cdk5r1, Myo1d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-048L23.bB6Ng01-048L23.g
ACCDH873214DH873215
length1,0981,093
definitionDH873214|Mus musculus domesticus DNA, BAC clone: B6Ng01-048L23, 5' end.DH873215|Mus musculus domesticus DNA, BAC clone: B6Ng01-048L23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,514,020 - 79,515,141)(79,348,294 - 79,349,403)
sequence
gaattcaagaccagtaagggctatctgagactctggagaaatggaaacag
cctagagatggttcagtgaggacaggtactcgatgccaggcctgagtcca
cagtggaaagaaccaccttccgcaagcttctgggcctccacagacactgc
atggcatgtacgcccctgcacatgcacatacacatatataaaattgtaat
ttaaaggccgcttcagttttcattgctaaggttaggtcccagagtaggaa
aggccaccgagaccccttttcctttctctttgggactgtagcaacctgac
acttttcctattgatcaaatttcccagacaccacaaagttcgaaataaat
ctgcgaataccgggttagcggcagggtgcaacttgcagcctttggcgtgt
cagcagcaccctttcacgtcttgtcagattgctttccacaccatgctcag
gacctgctcactccctccttgcccttgctccgtcatggtatctggtctgt
ggcttttttttttttttttttttaagaaaaggtctcaaattagatagata
gatagacagacagacagacagacagacagagcaagccccataaagcctag
gctggcccagaactcctgattgattctcagactccccagagccaagatca
gcagtgtgtaacatactatgagtggaaagagaggcgctctcagtatcaga
atcgagagagtaaccgtttggacctccttgggagactgagagaagacaga
atcctcttcaagtatcacccacagctgcagcaggctatgggagtttcccc
tgaatgtgagcctgcagggacacacagtgaggactgcccatgggactcct
ggacagtaagaactcagcttggttgacgctggggaccagtctgctcagtg
ggttcccttagagacaggtgcatctctgagggacactgggaaagctgcca
cccatgtactgtctctgagctcgctgtctcagctgtctctggttctgcag
acatacagctctccctcgggtcatcagtctcagcacagtgtcatctatag
ctgaatgtagtgggcagttattgctctaaggtagcctatcaaactcaa
gaattcctgcatagtcatagctacaaagagaaaccctgtctttgaaacat
aataaacaagcaaacaaatcccagggctgtgtattttcttaattacaaac
atggagaaaagctctcaaacccccacaattcgaactatgatttagcctgg
gatttaagcctctggcttcattgtcctgacttgagtctttgtgttcattg
ctgagccaccttctgttcaaggtcagctccatggattggcctcagcttct
gagcatcttttccagccactggcctctctgaggagtacccagtgtctttc
actgtcttctttcttgataggcagatttgttgctattgccataattttta
aggagtttgtttcttctctctttatccttattgcttaaagcctggaaaat
ataaaacaaaaaaatccatactttgaagacttgttttatatcattgttct
ctttagaaaattaatcagaaccagagagatagctcagcattaaaggctaa
gctcagaactagaaatatgaaaagattaacgataaaatttttcaaagggg
tcagtgagatggcccaacaggtgacgatgctgtcattataagcctgacaa
cctaaatccagtctgcacagcatacctggtagggagcgaggggagctgac
tcttgcccccatgggtgtgctgtgttgtcttctggcttccacacgcatgc
acacgctcacaccgacatgcacacacaaattagtaaaggtaaacaaaaat
acttatattctgtacattcagaacattttaacaatctatcctttttttgt
tgccttccttaggttcaaaactggcagatcaatggtgatctgctgatata
ccatgtcttgctgactttaaagccatattatgcaagccatatgaaattgt
agtggaccttacccatactgggcctagcaatcgctttaaacagacttcct
ctctagtggtttgttgtctttcttgctttgctatgacacgtctcttgcag
tctattctataactgtaactctggtcaggagtatacaataccatgagcgg
ctgctgactgcctcagggcagcaagctcattttctcgactgtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_79514020_79515141
seq2: B6Ng01-048L23.b_44_1141 (reverse)

seq1  TTGAGGTTTTGATAGGCTTACCCCTAAGAGCACTAACTGCCCACTTACAG  50
      |||||  |||||||||||    ||| |||||| ||||||||||| |||| 
seq2  TTGAG--TTTGATAGGCT---ACCTTAGAGCAATAACTGCCCAC-TACA-  43

seq1  TACAGGCTATAGGATGACACTGTGCCTTGGAGACTGATGACCCGAGGGAG  100
      | || |||||| |||||||||||||    |||||||||||||||||||||
seq2  TTCA-GCTATA-GATGACACTGTGC---TGAGACTGATGACCCGAGGGAG  88

seq1  AGCTGTATGGTCTGCAGAACCAGGAAGAACAGCTGAGACAGCGAGCTCAG  150
      |||||||| ||||||||||||||  || ||||||||||||||||||||||
seq2  AGCTGTAT-GTCTGCAGAACCAG--AG-ACAGCTGAGACAGCGAGCTCAG  134

seq1  AGACAAGTACATGGGGTGGCAGGCTTTCCCAGTGTCCCCTCAGAAGATGC  200
      |||| ||||||| |||||||| ||||||||||||| ||||||| ||||||
seq2  AGAC-AGTACAT-GGGTGGCA-GCTTTCCCAGTGT-CCCTCAG-AGATGC  179

seq1  ACCTGTCTCTAAGGGAACCCACCTGAGCAGAACTGGTCCCCCAGCGTCAA  250
      ||||||||||||||||||||| |||||||| |||||| ||||||||||||
seq2  ACCTGTCTCTAAGGGAACCCA-CTGAGCAG-ACTGGT-CCCCAGCGTCAA  226

seq1  CCAAGCTGAGTTCTTACTGTCCAGGAGTCCCATGGGCAGTCCTCACTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCTGAGTTCTTACTGTCCAGGAGTCCCATGGGCAGTCCTCACTGTG  276

seq1  TGTCCCTGCAGGCTCACATTCAGGGGAAACTCCCATAGCCTGCTGCAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCTGCAGGCTCACATTCAGGGGAAACTCCCATAGCCTGCTGCAGCT  326

seq1  GTGGGTGATACTTGAAGAGGATTCTGTCTTCTCTCAGTCTCCCAAGGAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTGATACTTGAAGAGGATTCTGTCTTCTCTCAGTCTCCCAAGGAGG  376

seq1  TCCAAACGGTTACTCTCTCGATTCTGATACTGAGAGCGCCTCTCTTTCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAACGGTTACTCTCTCGATTCTGATACTGAGAGCGCCTCTCTTTCCA  426

seq1  CTCATAGTATGTTACACACTGCTGATCTTGGCTCTGGGGAGTCTGAGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATAGTATGTTACACACTGCTGATCTTGGCTCTGGGGAGTCTGAGAAT  476

seq1  CAATCAGGAGTTCTGGGCCAGCCTAGGCTTTATGGGGCTTGCTCTGTCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCAGGAGTTCTGGGCCAGCCTAGGCTTTATGGGGCTTGCTCTGTCTG  526

seq1  TCTGTCTGTCTGTCTGTCTATCTATCTATCTAATTTGAGACCTTTTCTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTGTCTGTCTGTCTATCTATCTATCTAATTTGAGACCTTTTCTTA  576

seq1  AAAAAAAAAAAAAAAAAAAGCCACAGACCAGATACCATGACGGAGCAAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAAAAAGCCACAGACCAGATACCATGACGGAGCAAGG  626

seq1  GCAAGGAGGGAGTGAGCAGGTCCTGAGCATGGTGTGGAAAGCAATCTGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGAGGGAGTGAGCAGGTCCTGAGCATGGTGTGGAAAGCAATCTGAC  676

seq1  AAGACGTGAAAGGGTGCTGCTGACACGCCAAAGGCTGCAAGTTGCACCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACGTGAAAGGGTGCTGCTGACACGCCAAAGGCTGCAAGTTGCACCCT  726

seq1  GCCGCTAACCCGGTATTCGCAGATTTATTTCGAACTTTGTGGTGTCTGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGCTAACCCGGTATTCGCAGATTTATTTCGAACTTTGTGGTGTCTGGG  776

seq1  AAATTTGATCAATAGGAAAAGTGTCAGGTTGCTACAGTCCCAAAGAGAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTGATCAATAGGAAAAGTGTCAGGTTGCTACAGTCCCAAAGAGAAA  826

seq1  GGAAAAGGGGTCTCGGTGGCCTTTCCTACTCTGGGACCTAACCTTAGCAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAGGGGTCTCGGTGGCCTTTCCTACTCTGGGACCTAACCTTAGCAA  876

seq1  TGAAAACTGAAGCGGCCTTTAAATTACAATTTTATATATGTGTATGTGCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAACTGAAGCGGCCTTTAAATTACAATTTTATATATGTGTATGTGCA  926

seq1  TGTGCAGGGGCGTACATGCCATGCAGTGTCTGTGGAGGCCCAGAAGCTTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCAGGGGCGTACATGCCATGCAGTGTCTGTGGAGGCCCAGAAGCTTG  976

seq1  CGGAAGGTGGTTCTTTCCACTGTGGACTCAGGCCTGGCATCGAGTACCTG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAAGGTGGTTCTTTCCACTGTGGACTCAGGCCTGGCATCGAGTACCTG  1026

seq1  TCCTCACTGAACCATCTCTAGGCTGTTTCCATTTCTCCAGAGTCTCAGAT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCACTGAACCATCTCTAGGCTGTTTCCATTTCTCCAGAGTCTCAGAT  1076

seq1  AGCCCTTACTGGTCTTGAATTC  1122
      ||||||||||||||||||||||
seq2  AGCCCTTACTGGTCTTGAATTC  1098

seq1: chr11_79348294_79349403
seq2: B6Ng01-048L23.g_70_1162

seq1  GAATTCCTGCATAGTCATAGCTACAAAGAGAAACCCTGTCTTTGAAACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGCATAGTCATAGCTACAAAGAGAAACCCTGTCTTTGAAACAT  50

seq1  AATAAACAAGCAAACAAATCCCAGGGCTGTGTATTTTCTTAATTACAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACAAGCAAACAAATCCCAGGGCTGTGTATTTTCTTAATTACAAAC  100

seq1  ATGGAGAAAAGCTCTCAAACCCCCACAATTCGAACTATGATTTAGCCTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGAAAAGCTCTCAAACCCCCACAATTCGAACTATGATTTAGCCTGG  150

seq1  GATTTAAGCCTCTGGCTTCATTGTCCTGACTTGAGTCTTTGTGTTCATTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTAAGCCTCTGGCTTCATTGTCCTGACTTGAGTCTTTGTGTTCATTG  200

seq1  CTGAGCCACCTTCTGTTCAAGGTCAGCTCCATGGATTGGCCTCAGCTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCCACCTTCTGTTCAAGGTCAGCTCCATGGATTGGCCTCAGCTTCT  250

seq1  GAGCATCTTTTCCAGCCACTGGCCTCTCTGAGGAGTACCCAGTGTCTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATCTTTTCCAGCCACTGGCCTCTCTGAGGAGTACCCAGTGTCTTTC  300

seq1  ACTGTCTTCTTTCTTGATAGGCAGATTTGTTGCTATTGCCATAATTTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCTTCTTTCTTGATAGGCAGATTTGTTGCTATTGCCATAATTTTTA  350

seq1  AGGAGTTTGTTTCTTCTCTCTTTATCCTTATTGCTTAAAGCCTGGAAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTTTGTTTCTTCTCTCTTTATCCTTATTGCTTAAAGCCTGGAAAAT  400

seq1  ATAAAACAAAAAAATCCATACTTTGAAGACTTGTTTTATATCATTGTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACAAAAAAATCCATACTTTGAAGACTTGTTTTATATCATTGTTCT  450

seq1  CTTTAGAAAATTAATCAGAACCAGAGAGATAGCTCAGCATTAAAGGCTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGAAAATTAATCAGAACCAGAGAGATAGCTCAGCATTAAAGGCTAA  500

seq1  GCTCAGAACTAGAAATATGAAAAGATTAACGATAAAATTTTTCAAAGGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGAACTAGAAATATGAAAAGATTAACGATAAAATTTTTCAAAGGGG  550

seq1  TCAGTGAGATGGCCCAACAGGTGACGATGCTGTCATTATAAGCCTGACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGAGATGGCCCAACAGGTGACGATGCTGTCATTATAAGCCTGACAA  600

seq1  CCTAAATCCAGTCTGCACAGCATACCTGGTAGGGAGCGAGGGGAGCTGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAATCCAGTCTGCACAGCATACCTGGTAGGGAGCGAGGGGAGCTGAC  650

seq1  TCTTGCCCCCATGGGTGTGCTGTGTTGTCTTCTGGCTTCCACACGCATGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCCCCCATGGGTGTGCTGTGTTGTCTTCTGGCTTCCACACGCATGC  700

seq1  ACACGCTCACACCGACATGCACACAC-AATTAGTAAAGGTAAACAAAAAT  749
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ACACGCTCACACCGACATGCACACACAAATTAGTAAAGGTAAACAAAAAT  750

seq1  ACTTATATTCTGTACATTCAGAACATTTTAACAATCTATCCTTTTTTTGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATATTCTGTACATTCAGAACATTTTAACAATCTATCCTTTTTTTGT  800

seq1  TGCCTTCCTTAGGTTCAAAACTGGCCAGATCAATGGTGATCTGCTGATAT  849
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TGCCTTCCTTAGGTTCAAAACTGG-CAGATCAATGGTGATCTGCTGATAT  849

seq1  ACCATGTCTTGCTGACTTTAAAGCCATATTATGCAAAGCCATATGAAATT  899
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ACCATGTCTTGCTGACTTTAAAGCCATATTATGC-AAGCCATATGAAATT  898

seq1  GTAGTGGACCTTACCCATACTGGGCCTAGCAATCGCTTTAAAACAGACTT  949
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GTAGTGGACCTTACCCATACTGGGCCTAGCAATCGCTTT-AAACAGACTT  947

seq1  CCTCTCTAAGTGGTTTGTTGTCTTTCCTGGCTTTGCCTATGACAACGTCT  999
      ||||||| ||||||||||||||||| || |||||| ||||||| ||||||
seq2  CCTCTCT-AGTGGTTTGTTGTCTTT-CTTGCTTTG-CTATGAC-ACGTCT  993

seq1  C-TGCAGTCTATATCTATAACTGTAACTCCTGGGTCAGGGAGTATACCAA  1048
      | |||||||||| ||||||||||||||||   ||||| |||||||||  |
seq2  CTTGCAGTCTAT-TCTATAACTGTAACTC--TGGTCA-GGAGTATAC--A  1037

seq1  ATACCATGAGCGGCTGCTGACTGGCCTCAAGGGCAGCAAAAGGCTCATTT  1098
      |||||||||||||||||||||| ||||| ||||||||||   ||||||||
seq2  ATACCATGAGCGGCTGCTGACT-GCCTC-AGGGCAGCAA---GCTCATTT  1082

seq1  TCATCGACTGTC  1110
      || |||||||||
seq2  TC-TCGACTGTC  1093