BAC Information

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BAC

Clone NameB6Ng01-049H10
Chromosome14 (Build37)11 (Build37)
Map Location 16,876,764 - 16,877,056101,105,863 - 101,106,861
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLrrc3b, LOC667205, 1700062C10Rik
Downstream geneLOC667209, EG435389, Oxsm, Ngly1, Top2b, Rarb, Tpi-rs9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-049H10.bB6Ng01-049H10.g
ACCDH873717DH873718
length847995
definitionDH873717|Mus musculus domesticus DNA, BAC clone: B6Ng01-049H10, 5' end.DH873718|Mus musculus domesticus DNA, BAC clone: B6Ng01-049H10, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(16,876,764 - 16,877,056)(101,105,863 - 101,106,861)
sequence
gaattccccatcccaatgtgctatcatcccagctgatatcagctgactca
gtctagcctgtatccttttttgcacccttgtaatcaacagacttcaaaag
atgaaatttgtagtgctaacattaatgctgtatgttgcttactaccgtgt
gagatacataatttctaccatcttctgtggagctccaccaaagacagtgt
ccctcagttggtctttctgtgtccaggtcccttcgtttgggcaccatctg
tagctgtccagtggccatggataagcaggtttatctggaaggaaagcagg
ggatggaatagaatgggtggatgagagaaataatgaaccaagacaaaagt
ttctgaccaaggctcaatgtttaattcttaaatctaaatttaaagggtgg
aaacccaccccccctctttgccaggacctcatcaggaaaacaggctcagc
tgcccaacaggtagtggctgcttgcaggaagctgcagatgtggcaggaca
agagacttcacctaggtctgaagactccaccctaggcaggctaggcaact
gtggcaaatgaggtctgatttagccctctcaaggctgagggaagggtaca
attagaagcactggctgtactcctagaagatcctgttcaattcccagcac
ccacatggtagctctgtactaaccagttttaactggttatgtttatggta
ctaggggatctaattttctctgggcttctcaccaggcacgttattgcaca
gacacacatccagacagacacccatacatataaaaatgtaaaatggggag
ctgagagatggtccagttagtcaaaagcattggctggtcttccccag
gaattcaaggtcttccttggctctgttgaggcaagttggagctttaggag
atattgatgcggaaggaaggaaggaaggaaggaaggaaggaaggaaggaa
ggaaggaaggaaggcaagcaagcccagggagttagtggttaagagcattt
tctgctcttgtacaggaggaagttcagttcccagcattcatatcaggtgg
ctcacactcccctgcaacttcagctccaaaggacccccgtactctactct
ggcttcttcaggcacctgcacacacacatacatatatgtgcacccacaca
aggtgacatacattaaaaagtatttaaaatgtaaagagtaaaagggcaat
tctctgaagaattcttccattcttggtccccagtttgaagtggctctgag
gctacctggttctctgcacctctgatccttaccaacagaactttgaggtg
ttcaaagggctacccctaccccttatagctgcctataattaattccagct
gcctgtggccagctggaagtcttgcaatgctttttttttttttttttttt
tttttaagggaggaccataaaagataacttttggtggacaggaatcagta
aactgggacaacagcaacagctgagttcaagggtcaatgtctgggagtaa
ttgggaaagttttgcgctgacagctgtgtgcctggagtttaaaagtgcgg
tcaaacaagcccctgggctaattcagctaatggctggctggcccaatata
cagcaacagctgagttgttatagctgggaggttccctgggggcccagact
gaacctttggggcttccaataaacgtggccttacccaagtccctcaggaa
aaggaaaaaaagaaaacccgcttctcttccacaaaggagattcctctcac
gccaggaggagagcagggtcctaataggcctgaaaaacaacggacaatct
tataaactccaggcttgtagagctggtgaaggtagatttgggaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_16876764_16877056
seq2: B6Ng01-049H10.b_74_390

seq1  AGCTGATATCAGCGCTGGGCCAACACTGACTCAGTCTAGCCTGTATCC-T  49
      ||||||||||||             ||||||||||||||||||||||| |
seq2  AGCTGATATCAG-------------CTGACTCAGTCTAGCCTGTATCCTT  37

seq1  TTTTGCACCCTTGTGAATAACAGCCTTCAAAACATGACATTTGTAGCACT  99
      |||||||||||||| |  ||||| |||||||| |||| ||||||||  ||
seq2  TTTTGCACCCTTGTAATCAACAGACTTCAAAAGATGAAATTTGTAGTGCT  87

seq1  AATATTAATTCTGTATGTTACTTACT---GTGCAGAGATACAT--CTTCT  144
      || |||||| ||||||||| ||||||   |||  |||||||||   ||||
seq2  AACATTAATGCTGTATGTTGCTTACTACCGTG-TGAGATACATAATTTCT  136

seq1  TACTTTTCTTGTGGAGCTCCAAC-AAGACAGTGTTCCCTCAGTCGGTCCT  193
        | | |  |||||||||||| | ||||||||| ||||||||| |||| |
seq2  ACCATCTTCTGTGGAGCTCCACCAAAGACAGTG-TCCCTCAGTTGGTCTT  185

seq1  TCCATATCCAGGCCCC--ACTTTAGGCA--------------CCAGTG--  225
      ||  | |||||| |||    ||| ||||              ||||||  
seq2  TCTGTGTCCAGGTCCCTTCGTTTGGGCACCATCTGTAGCTGTCCAGTGGC  235

seq1  ------------GGTT--CCTGAAAGGGAGTCTGGGGCTGCATGGGAGAA  261
                  ||||   ||| |||| |  | ||||    |||| | | 
seq2  CATGGATAAGCAGGTTTATCTGGAAGGAAAGCAGGGG----ATGGAATAG  281

seq1  AATAG-----TGAGAGAAATAATGAGACCAAGACAAA  293
      ||| |     ||||||||||||||| |||||||||||
seq2  AATGGGTGGATGAGAGAAATAATGA-ACCAAGACAAA  317

seq1: chr11_101105863_101106861
seq2: B6Ng01-049H10.g_67_1061

seq1  GAATTCAAGGTCTTCCTTGGCTCTGTTGAGGCAAGTTGGAGCTTTAGGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGTCTTCCTTGGCTCTGTTGAGGCAAGTTGGAGCTTTAGGAG  50

seq1  ATATTGATGCGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGATGCGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAA  100

seq1  GGAAGGAAGGAAGGCAAGCAAGCCCAGGGAGTTAGTGGTTAAGAGCATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGAAGGAAGGCAAGCAAGCCCAGGGAGTTAGTGGTTAAGAGCATTT  150

seq1  TCTGCTCTTGTACAGGAGGAAGTTCAGTTCCCAGCATTCATATCAGGTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTCTTGTACAGGAGGAAGTTCAGTTCCCAGCATTCATATCAGGTGG  200

seq1  CTCACACTCCCCTGCAACTTCAGCTCCAAAGGACCCCCGTACTCTACTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACACTCCCCTGCAACTTCAGCTCCAAAGGACCCCCGTACTCTACTCT  250

seq1  GGCTTCTTCAGGCACCTGCACACACACATACATATATGTGCACCCACACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCTTCAGGCACCTGCACACACACATACATATATGTGCACCCACACA  300

seq1  AGGTGACATACATTAAAAAGTATTTAAAATGTAAAGAGTAAAAGGGCAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGACATACATTAAAAAGTATTTAAAATGTAAAGAGTAAAAGGGCAAT  350

seq1  TCTCTGAAGAATTCTTCCATTCTTGGTCCCCAGTTTGAAGTGGCTCTGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGAAGAATTCTTCCATTCTTGGTCCCCAGTTTGAAGTGGCTCTGAG  400

seq1  GCTACCTGGTTCTCTGCACCTCTGATCCTTACCAACAGAACTTTGAGGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACCTGGTTCTCTGCACCTCTGATCCTTACCAACAGAACTTTGAGGTG  450

seq1  TTCAAAGGGCTACCCCTACCCCTTATAGCTGCCTATAATTAATTCCAGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAGGGCTACCCCTACCCCTTATAGCTGCCTATAATTAATTCCAGCT  500

seq1  GCCTGTGGCCAGCTGGAAGTCTTGCAATGCTTTTTTTTTTTTTTTTTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTGGCCAGCTGGAAGTCTTGCAATGCTTTTTTTTTTTTTTTTTTTT  550

seq1  TTTTTAAGGGAGGACCATAAAAGATAAC-TTTGGTGGACAGGAATCAGTA  599
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TTTTTAAGGGAGGACCATAAAAGATAACTTTTGGTGGACAGGAATCAGTA  600

seq1  AACTGGGACAACAGCAACAGCTGAGTTCAAGGGTCAATGTCTGGGAGTAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGGACAACAGCAACAGCTGAGTTCAAGGGTCAATGTCTGGGAGTAA  650

seq1  TTGGGAAAGTTTTGCGCTGACAGCTGTGTGCCTGGAGTTGAAAAGTGCGG  699
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TTGGGAAAGTTTTGCGCTGACAGCTGTGTGCCTGGAGTTTAAAAGTGCGG  700

seq1  CCAAACAAGCCCCTGGGCTAATTCAGGCTAATGGCTGGCTGGCCCAATAT  749
       |||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TCAAACAAGCCCCTGGGCTAATTCA-GCTAATGGCTGGCTGGCCCAATAT  749

seq1  ACAGCAACAGCTGAGTTGTGATAGCTGGCAGGGTCCCTGGGGGCCCAGAC  799
      ||||||||||||||||||| |||||||| ||| |||||||||||||||||
seq2  ACAGCAACAGCTGAGTTGTTATAGCTGGGAGGTTCCCTGGGGGCCCAGAC  799

seq1  TGAGCCTTTGGGGCTTCCCAGTAAAACGTGACCTTAGCCAAGTCACTCAG  849
      ||| |||||||||||||| |   ||||||| ||||| ||||||| |||||
seq2  TGAACCTTTGGGGCTTCCAA--TAAACGTGGCCTTACCCAAGTCCCTCAG  847

seq1  G-AAAGGAAAAAAAGAAAACCGGCTTCTCTTTCCACAAAGGAGATTCCTC  898
      | ||||||||||||||||||| ||||||| ||||||||||||||||||||
seq2  GAAAAGGAAAAAAAGAAAACCCGCTTCTC-TTCCACAAAGGAGATTCCTC  896

seq1  -CAGAGCAGGAGGAGAGCAAGGTCCTAATAGTGCATGAGAAAACAACGGA  947
       ||   ||||||||||||| ||||||||||| || ||| |||||||||||
seq2  TCACGCCAGGAGGAGAGCAGGGTCCTAATAG-GCCTGA-AAAACAACGGA  944

seq1  CAACCGTATAAGACTCCAAGGCTGTAGAGCTGGGGAAGGTAGATTTGGGA  997
      ||| | ||||| |||||| |  ||||||||||| ||||||||||||||||
seq2  CAATCTTATAA-ACTCCAGGCTTGTAGAGCTGGTGAAGGTAGATTTGGGA  993

seq1  AC  999
      ||
seq2  AC  995