BAC Information

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BAC

Clone NameB6Ng01-049J22
Chromosome11 (Build37)
Map Location 40,539,742 - 40,698,330
singlet/doubletdoublet
Overlap geneHmmr, Nudcd2, Ccng1
Upstream geneLOC100039241, LOC382508, LOC432549, Mat2b
Downstream geneLOC100039256, LOC100039285, Hspd1, LOC100039292
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-049J22.bB6Ng01-049J22.g
ACCDH873831DH873832
length9521,030
definitionDH873831|Mus musculus domesticus DNA, BAC clone: B6Ng01-049J22, 5' end.DH873832|Mus musculus domesticus DNA, BAC clone: B6Ng01-049J22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,539,742 - 40,540,711)(40,697,278 - 40,698,330)
sequence
gaattctataatttaaaaatttaaaattgtttcaccaaaaatgtcaagtc
atgtcattcatatccattcccacaaaaatactttacatatctgctaacaa
ataaaaatataacataagccaaatacatacttcattttttctaatgatat
tagtataaacttaggagagttgtcttatcaaattaaatgtatattttttg
ggaggtggggattcaagccagatttactctgtgtagatccagctgttcta
gaactcactctgtagaccaggttggcctcgaactcagggatccacctgcc
ttgacctcccaagtgctgggattaaaggcaggcaccaccacttcctggtt
taaatccaaaaattctgtcagacgtatttatgttcattttataaaaaaat
gcagtttacctgtttttctaaaaaaaaattagaaattttctaaattcagg
attgcttctagtggtgaatcagttgcctaccatgtttaagctttgtgctt
gattcccagtaccacatacaaaaaaggtgggagaaccaaaaacttgcgtt
cctaggacaggagagatggctcagcagttaaaaatatgtagtgctttttt
agaggaccccagtttggttcttagcatctatgttggctggctcatgacta
cctgtcactccagctccatggtaccggccactgtcttctggccttcatgg
gcactgcatgcatgcacgtacacatgctcacacactcttagggttacttt
tggtgtgaggaaatgccatgaccagaagcaatctggggaggaatgggttt
attttccctgctatcagtcatcattgaagaaaatcaggcaggtactcaaa
cagtaggacttggaggcaggactgatggaaggtgctctactggctgtctc
atggctactagcctgcttcttacacacccaggcaagtgccctgggggggc
cc
gaattctctttgattctacctctccataatcctcagagttccttagggag
taatgtcaattatgccatcgtcaatgcaaatggcattttaaagagttagc
actgcacacagaatgctaatgctgttcagaagtgtcagtgtgagctgcag
aatctctcctgaactctgcagcccgttgcgtgtctttattcattcaaatc
taatcctatgaactgagggtatgggccactggtttgctctctgcctgagt
cactcaaactcacccattaaaaacaatccattttccaaaatcagacagtg
tggaatacagttatggcagccaaaagacacactcctatattcagaaaatg
gtaatgagaaggctgatggctttcttgcttgataggttattcttattaag
ataaaatatgttccagtactatctcagaaacatgtaaatcaaccagttta
tgaaaataggggagcttagactttcaaattaaggtgaacaaaatgtgaac
aggaactttgtagcaaagtacctacctcctgtagcatatctcctattact
gttttctaatgttgcagtattataaagacatatcttataatggtattgtc
atgaaaatttagagacctttatagtttgtgcaatgaaagtttaatccatc
atgataattgaagcctacaagtaaacacactacatttattaggcatctat
cctgtagggtgaactattctcttggcaacaaaatgtgcacagaaagggca
ttcttacttgacccataagaaataatgaattcaccataacaacagaaaca
ggagatggcttcatgcttagtatgttctttgaaggcatgagcagtagata
cccaaacccacataatactgggcaggcttgatgttgctctgcagtcagct
tggagtcagaggcaggatcactagacagtgtcagtggagatggcaaagtc
atgattatgagaagagacttgtctcagaacactgtgggagcagtagtagg
gtaggttccacatcactgggtctaccatgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_40539742_40540711
seq2: B6Ng01-049J22.b_44_995

seq1  GAATTCTATAATTTAAAAATTTAAAATTGTTTCACCAAAAATGTCAAGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATAATTTAAAAATTTAAAATTGTTTCACCAAAAATGTCAAGTC  50

seq1  ATGTCATTCATATCCATTCCCACAAAAATACTTTACATATCTGCTAACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCATTCATATCCATTCCCACAAAAATACTTTACATATCTGCTAACAA  100

seq1  ATAAAAATATAACATAAGCCAAATACATACTTCATTTTTTCTAATGATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAATATAACATAAGCCAAATACATACTTCATTTTTTCTAATGATAT  150

seq1  TAGTATAAACTTAGGAGAGTTGTCTTATCAAATTAAATGTATATTTTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATAAACTTAGGAGAGTTGTCTTATCAAATTAAATGTATATTTTTTG  200

seq1  GGAGGTGGGGATTCAAGCCAGATTTACTCTGTGTAGATCCAGCTGTTCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTGGGGATTCAAGCCAGATTTACTCTGTGTAGATCCAGCTGTTCTA  250

seq1  GAACTCACTCTGTAGACCAGGTTGGCCTCGAACTCAGGGATCCACCTGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCACTCTGTAGACCAGGTTGGCCTCGAACTCAGGGATCCACCTGCC  300

seq1  TTGACCTCCCAAGTGCTGGGATTAAAGGCAGGCACCACCACTTCCTGGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCTCCCAAGTGCTGGGATTAAAGGCAGGCACCACCACTTCCTGGTT  350

seq1  TAAATCCAAAAATTCTGTCAGACGTATTTATGTTCATTTTATAAAAAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCCAAAAATTCTGTCAGACGTATTTATGTTCATTTTATAAAAAAAT  400

seq1  GCAGTTTACCTGTTTTTCTAAAAAAAAATTAGAAATTTTCTAAATTCAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTTACCTGTTTTTCTAAAAAAAAATTAGAAATTTTCTAAATTCAGG  450

seq1  ATTGCTTCTAGTGGTGAATCAGTTGCCTACCATGTTTAAGCTTTGTGCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTTCTAGTGGTGAATCAGTTGCCTACCATGTTTAAGCTTTGTGCTT  500

seq1  GATTCCCAGTACCACATACAAAAAAGGTGGGAGAACCAAAAACTTGCGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCCAGTACCACATACAAAAAAGGTGGGAGAACCAAAAACTTGCGTT  550

seq1  CCTAGGACAGGAGAGATGGCTCAGCAGTTAAAAATATGTAGTGCTTTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGACAGGAGAGATGGCTCAGCAGTTAAAAATATGTAGTGCTTTTTT  600

seq1  AGAGGACCCCAGTTTGGTTCTTAGCATCTATGTTGGCTGGCTCATGACTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGACCCCAGTTTGGTTCTTAGCATCTATGTTGGCTGGCTCATGACTA  650

seq1  CCTGTCACTCCAGCTCCATGGTACCGGCCACTGTCTTCTGGCCTTCATGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCACTCCAGCTCCATGGTACCGGCCACTGTCTTCTGGCCTTCATGG  700

seq1  GCACTGCATGCATGCACGTACACATGCTCACACACTCTTAGGGTTACTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGCATGCATGCACGTACACATGCTCACACACTCTTAGGGTTACTTT  750

seq1  TGGTGTGAGGAAATGCCATGACCAGAAGCAATCTGGGGAGGAATGGGTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTGAGGAAATGCCATGACCAGAAGCAATCTGGGGAGGAATGGGTTT  800

seq1  ATTTTCCCTGCTATCAGTCCATCATTGAAGAAAATCAGGGCAGGTACTCA  850
      |||||||||||||||||| |||||||||||||||||| ||||||||||||
seq2  ATTTTCCCTGCTATCAGT-CATCATTGAAGAAAATCA-GGCAGGTACTCA  848

seq1  AACAAGGTAGGAACTTGGAGGCAGGACCTGATGGAAGGGTGCTTCTTACT  900
      ||||  ||||| |||||||||||||| ||||||||| ||||||   ||||
seq2  AACA--GTAGG-ACTTGGAGGCAGGA-CTGATGGAA-GGTGCT--CTACT  891

seq1  GGCTTGTTCCTCATGGCTTACTTAGCCTGCTTTCTTACAGCACCCAGGCA  950
      ||| |||  |||||||| ||| |||||||| |||||||| ||||||||||
seq2  GGC-TGT--CTCATGGC-TAC-TAGCCTGC-TTCTTACA-CACCCAGGCA  934

seq1  CAGTAGCCCTGGGGTGGCCC  970
       ||| ||||||||| |||||
seq2  -AGT-GCCCTGGGGGGGCCC  952

seq1: chr11_40697278_40698330
seq2: B6Ng01-049J22.g_68_1097 (reverse)

seq1  GCATGTGTAGACCCAAGGTTGATGTTGGGAACTACCCTTTACTACTGCT-  49
      ||||| |||||||||    ||||| ||| | ||||||  |||||||||| 
seq2  GCATG-GTAGACCCA---GTGATG-TGGAACCTACCC--TACTACTGCTC  43

seq1  CCACAGTGTTCTTTGAGAC-AGTCTC-TCTCAATTAAATCATGAACTTTT  97
      |||||||||||  |||||| |||||| |||||    ||||||| ||||| 
seq2  CCACAGTGTTC--TGAGACAAGTCTCTTCTCA---TAATCATG-ACTTT-  86

seq1  GGCCATCT-CACTGGACAACTTGTTCTAGTGATTCCTGCCTCTGACTTCC  146
       ||||||| |||| ||| |||   |||||||| ||||||||||||| |||
seq2  -GCCATCTCCACT-GAC-ACT--GTCTAGTGA-TCCTGCCTCTGAC-TCC  129

seq1  AAGGCTGGACTTGCAGAGGCAACATCAAGCCTGCCCAGTATTTATGTGGG  196
      || ||| ||| |||||| |||||||||||||||||||||| |||||||||
seq2  AA-GCT-GAC-TGCAGA-GCAACATCAAGCCTGCCCAGTA-TTATGTGGG  174

seq1  TTTTGGGTATCTACTGCTCATGCCTTCAAAGAAACATACTAAGCATGAAG  246
       |||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  -TTTGGGTATCTACTGCTCATGCCTTCAAAG-AACATACTAAGCATGAAG  222

seq1  CCATCTCCTGTTTCTGTTGTTATGGTGAATTCATTATTTCTTATGGGTCA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTCCTGTTTCTGTTGTTATGGTGAATTCATTATTTCTTATGGGTCA  272

seq1  AGTAAGAATGCCC-TTCTGTGCACATTTTGTTGCCAAGAGAATAGTTCAC  345
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AGTAAGAATGCCCTTTCTGTGCACATTTTGTTGCCAAGAGAATAGTTCAC  322

seq1  CCTACAGGATAGATGCCTAATAAATGTAGTGTGTTTACTTGTAGGCTTCA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACAGGATAGATGCCTAATAAATGTAGTGTGTTTACTTGTAGGCTTCA  372

seq1  ATTATCATGATGGATTAAACTTTCATTGCACAAACTATAAAGGTCTCTAA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCATGATGGATTAAACTTTCATTGCACAAACTATAAAGGTCTCTAA  422

seq1  ATTTTCATGACAATACCATTATAAGATATGTCTTTATAATACTGCAACAT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCATGACAATACCATTATAAGATATGTCTTTATAATACTGCAACAT  472

seq1  TAGAAAACAGTAATAGGAGATATGCTACAGGAGGTAGGTACTTTGCTACA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAACAGTAATAGGAGATATGCTACAGGAGGTAGGTACTTTGCTACA  522

seq1  AAGTTCCTGTTCACATTTTGTTCACCTTAATTTGAAAGTCTAAGCTCCCC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCCTGTTCACATTTTGTTCACCTTAATTTGAAAGTCTAAGCTCCCC  572

seq1  TATTTTCATAAACTGGTTGATTTACATGTTTCTGAGATAGTACTGGAACA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCATAAACTGGTTGATTTACATGTTTCTGAGATAGTACTGGAACA  622

seq1  TATTTTATCTTAATAAGAATAACCTATCAAGCAAGAAAGCCATCAGCCTT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTATCTTAATAAGAATAACCTATCAAGCAAGAAAGCCATCAGCCTT  672

seq1  CTCATTACCATTTTCTGAATATAGGAGTGTGTCTTTTGGCTGCCATAACT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTACCATTTTCTGAATATAGGAGTGTGTCTTTTGGCTGCCATAACT  722

seq1  GTATTCCACACTGTCTGATTTTGGAAAATGGATTGTTTTTAATGGGTGAG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCCACACTGTCTGATTTTGGAAAATGGATTGTTTTTAATGGGTGAG  772

seq1  TTTGAGTGACTCAGGCAGAGAGCAAACCAGTGGCCCATACCCTCAGTTCA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGTGACTCAGGCAGAGAGCAAACCAGTGGCCCATACCCTCAGTTCA  822

seq1  TAGGATTAGATTTGAATGAATAAAGACACGCAACGGGCTGCAGAGTTCAG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATTAGATTTGAATGAATAAAGACACGCAACGGGCTGCAGAGTTCAG  872

seq1  GAGAGATTCTGCAGCTCACACTGACACTTCTGAACAGCATTAGCATTCTG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGATTCTGCAGCTCACACTGACACTTCTGAACAGCATTAGCATTCTG  922

seq1  TGTGCAGTGCTAACTCTTTAAAATGCCATTTGCATTGACGATGGCATAAT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCAGTGCTAACTCTTTAAAATGCCATTTGCATTGACGATGGCATAAT  972

seq1  TGACATTACTCCCTAAGGAACTCTGAGGATTATGGAGAGGTAGAATCAAA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATTACTCCCTAAGGAACTCTGAGGATTATGGAGAGGTAGAATCAAA  1022

seq1  GAGAATTC  1053
      ||||||||
seq2  GAGAATTC  1030