BAC Information

Click to search

BAC

Clone NameB6Ng01-049P05
Chromosome11 (Build37)Y (Build37)
Map Location 94,648,800 - 94,649,7481,870,454 - 1,870,568
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneUtp18, Mbtd1, Nme2, Nme1, Spag9, LOC100039431, LOC100039440, Tob1, Wfikkn2, 3300001P08Rik, Ankrd40, Abcc3, Cacna1g, Spata20, Epn3, Mycbpap, Rsad1, BC018371, Chad, Lrrc59, Eme1, Mrpl27, Xylt2, OTTMUSG00000002038, Cdc34-ps, A430060F13Rik, Tmem92
Downstream geneLOC100039410, LOC544807, LOC544808, LOC665174, LOC432591, LOC100039739, Col1a1, Sgca, Hils1, Ppp1r9b, Samd14, Pdk2, Itga3, Dlx3, Dlx4, LOC100039437, Tac4, Myst2, 5730593F17Rik, Slc35b1, Spop, LOC100039483, Nxph3, Ngfr, Phb, 1110035M17Rik, Zfp652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-049P05.bB6Ng01-049P05.g
ACCDH874053DH874054
length937432
definitionDH874053|Mus musculus domesticus DNA, BAC clone: B6Ng01-049P05, 5' end.DH874054|Mus musculus domesticus DNA, BAC clone: B6Ng01-049P05, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(94,648,800 - 94,649,748)(1,870,454 - 1,870,568)
sequence
gaattcacatcacgcacctggaccttgagtaatcagggcctggcggagat
tttttagggaaagtgctcccggcacaactgtgggaacctgagtttgattc
ccagcacccatgtaacaagctacataagtaacataagtttattaactcag
ggctggtgggtggatcccagagacttcctttccagccagctcacctgaaa
tggtgaactctgggttcagtaagaggccctgtctccaaaataagtaagta
aataaataaatatagcttcgtggaagagactctggcatctccacagccct
ctgacctccacatggaagcttgagtggacacacacatgcacagaacacat
gtgcactgtcccagcttcacggctgtgatcgttatcctgacagaaggccc
ttggaggacaaaggacttcattctgcttacagctcagcttagagttcatc
ctgcagggaggtcacagtagcagggactctgaagcagccgctcccattcg
cagacaacagcacagagaaaggattgcagctacagaacagaaggttcaca
gtgggctgggtgcctgagcgtcctcatctggttcctggagcaatcctgga
cagctgctggtcttcagtcaacctttgaaggcagatgaagctggttctag
tgtcactcaaggaaggagtagaggcagcaacagggtagaagaactggcca
gagagagtgaagggcaagaaaagtagaagcaaagctcacttctttcagct
cctttttatgtggcaagagaagtgccactcacattacggtgggccttcac
ccttcagttatacagagacttcatagtccctcctacaggctacatgatgt
aaccatccttactggtgactcttccctgtgattctaggctttacagttaa
caaactagcagaaaatatatatattcacacacccaca
ttttagtctttattcattcctaatatctgcaatttcagcccaaatttctc
accaagtaccattttagttacgcttcacaatttttgacctatttcagtgt
gagttgttgaagatggtcctgatttctagcaggctttctttctgaatcgg
ggaggggtgacttagaaatgttttgcttggctacacatggtatcatgctc
ttaatcccagcgctgggaggcagagaatgggcaggcatctgtgagttgga
ggacaacttggtccacatagtaagttctgagctagtcagggatatatagt
gaaagaaagaaaaaaagaaagatggcctagtcggccatcactggaaagag
aggcccattggacacgcaaaatttatatgccccagtacaggggaacgcca
gggccaaaaagggggagtgggtgggtagggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_94648800_94649748
seq2: B6Ng01-049P05.b_42_978

seq1  GAATTCACATCACGCACCTGGACCTTGAGTAATCAGGGCCTGGCGGAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATCACGCACCTGGACCTTGAGTAATCAGGGCCTGGCGGAGAT  50

seq1  TTTTTAGGGAAAGTGCTCCCGGCACAACTGTGGGAACCTGAGTTTGATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAGGGAAAGTGCTCCCGGCACAACTGTGGGAACCTGAGTTTGATTC  100

seq1  CCAGCACCCATGTAACAAGCTACATAAGTAACATAAGTTTATTAACTCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCACCCATGTAACAAGCTACATAAGTAACATAAGTTTATTAACTCAG  150

seq1  GGCTGGTGGGTGGATCCCAGAGACTTCCTTTCCAGCCAGCTCACCTGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGTGGGTGGATCCCAGAGACTTCCTTTCCAGCCAGCTCACCTGAAA  200

seq1  TGGTGAACTCTGGGTTCAGTAAGAGGCCCTGTCTCCAAAATAAGTAAGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGAACTCTGGGTTCAGTAAGAGGCCCTGTCTCCAAAATAAGTAAGTA  250

seq1  AATAAATAAATATAGCTTCGTGGAAGAGACTCTGGCATCTCCACAGCCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATAAATATAGCTTCGTGGAAGAGACTCTGGCATCTCCACAGCCCT  300

seq1  CTGACCTCCACATGGAAGCTTGAGTGGACACACACATGCACAGAACACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCTCCACATGGAAGCTTGAGTGGACACACACATGCACAGAACACAT  350

seq1  GTGCACTGTCCCAGCTTCACGGCTGTGATCGTTATCCTGACAGAAGGCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACTGTCCCAGCTTCACGGCTGTGATCGTTATCCTGACAGAAGGCCC  400

seq1  TTGGAGGACAAAGGACTTCATTCTGCTTACAGCTCAGCTTAGAGTTCATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGGACAAAGGACTTCATTCTGCTTACAGCTCAGCTTAGAGTTCATC  450

seq1  CTGCAGGGAGGTCACAGTAGCAGGGACTCTGAAGCAGCCGCTCCCATTCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGGGAGGTCACAGTAGCAGGGACTCTGAAGCAGCCGCTCCCATTCG  500

seq1  CAGACAACAGCACAGAGAAAGGATTGCAGCTACAGAACAGAAGGTTCACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAACAGCACAGAGAAAGGATTGCAGCTACAGAACAGAAGGTTCACA  550

seq1  GTGGGCTGGGTGCCTGAGCGTCCTCATCTGGTTCCTGGAGCAATCCTGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCTGGGTGCCTGAGCGTCCTCATCTGGTTCCTGGAGCAATCCTGGA  600

seq1  CAGCTGCTGGTCTTCAGTCAACCTTTGAAGGCAGATGAAGCTGGTTCTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGCTGGTCTTCAGTCAACCTTTGAAGGCAGATGAAGCTGGTTCTAG  650

seq1  TGTCACTCAAGGAAGGAGTAGAGGCAGCAACAGGGTAGAAGAACTGGCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACTCAAGGAAGGAGTAGAGGCAGCAACAGGGTAGAAGAACTGGCCA  700

seq1  GAGAGAGTGAAGGGCAAG-AAAGTAGAAGGCAAAGCTCACTTCTTTCAGC  749
      |||||||||||||||||| ||||||||| |||||||||||||||||||||
seq2  GAGAGAGTGAAGGGCAAGAAAAGTAGAA-GCAAAGCTCACTTCTTTCAGC  749

seq1  TCC-TTTTATGTGGGCAAAGAGAAGGTGCCACTCACATTACGGTGGGCCT  798
      ||| ||||||||||   ||||||| |||||||||||||||||||||||||
seq2  TCCTTTTTATGTGG--CAAGAGAA-GTGCCACTCACATTACGGTGGGCCT  796

seq1  TCACCCTCCAGTTAATACAAGAGAACTTCCATAGTCCCTCCTACAGGCTA  848
      ||||||| ||||| |||| |||| |||| |||||||||||||||||||||
seq2  TCACCCTTCAGTT-ATAC-AGAG-ACTT-CATAGTCCCTCCTACAGGCTA  842

seq1  CCATGATGTAACCAATCCTTACT-GTGACTCTTCCCTGTGATTCTAGGCT  897
       |||||||||||| ||||||||| ||||||||||||||||||||||||||
seq2  -CATGATGTAACC-ATCCTTACTGGTGACTCTTCCCTGTGATTCTAGGCT  890

seq1  ATACAAGTTAACAAAACTAGCAGAAAAATATATTATATTCACAACACCCA  947
       ||| ||||||| |||||||||| |||||||| ||||||||| |||||||
seq2  TTAC-AGTTAAC-AAACTAGCAG-AAAATATA-TATATTCAC-ACACCCA  935

seq1  CA  949
      ||
seq2  CA  937

seq1: chrY_1870454_1870568
seq2: B6Ng01-049P05.g_391_505

seq1  AAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATTGGACATGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATTGGACACGC  50

seq1  AAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCCAAAAAGGGGCAG  100
      ||| ||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AAAATTTATATGCCCCAGTACAGGGGAACGCCAGGGCCAAAAAGGGGGAG  100

seq1  TGGGTGGGTAGGGGA  115
      |||||||||||||||
seq2  TGGGTGGGTAGGGGA  115