BAC Information

Click to search

BAC

Clone NameB6Ng01-050M01
Chromosome11 (Build37)
Map Location 94,340,929 - 94,462,739
singlet/doubletdoublet
Overlap geneSpata20, Epn3, Mycbpap, Rsad1, BC018371, Chad
Upstream geneCar10, LOC629636, Utp18, Mbtd1, Nme2, Nme1, Spag9, LOC100039431, LOC100039440, Tob1, Wfikkn2, 3300001P08Rik, Ankrd40, Abcc3, Cacna1g
Downstream geneLrrc59, Eme1, Mrpl27, Xylt2, OTTMUSG00000002038, Cdc34-ps, A430060F13Rik, Tmem92, LOC100039410, LOC544807, LOC544808, LOC665174, LOC432591, LOC100039739, Col1a1, Sgca, Hils1, Ppp1r9b, Samd14, Pdk2, Itga3, Dlx3, Dlx4, LOC100039437, Tac4, Myst2, 5730593F17Rik, Slc35b1, Spop, LOC100039483, Nxph3, Ngfr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-050M01.bB6Ng01-050M01.g
ACCDH874604DH874605
length923495
definitionDH874604|Mus musculus domesticus DNA, BAC clone: B6Ng01-050M01, 5' end.DH874605|Mus musculus domesticus DNA, BAC clone: B6Ng01-050M01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,461,809 - 94,462,739)(94,340,929 - 94,341,411)
sequence
gaattctgtatgcgtcccatgtggtacacagagccaggagtggaggcttt
ttaacagtacacccgaggaatagagctgaatactgctagggcattctctc
agctgtattaactcccgtgaaaaatgtggggaccgtttgggggtccacag
ggcactgagtataacagatctttccttcctttgttttcttttccttcctt
cttttcctccaccacctcctctactttttggagcagggttctctctgtag
ctgtggttgtcctgaaactcgctctgtacaccaggctagccttgaaatca
cagagatctgcctgactctgccttctgagtgcagagactaaagacctgta
ccaccactgcccggcttccttcctcctttcagtcattaccacttctgggc
ccattttttcatctgtcttcagtgcaagatctgggaaaggggttggcagg
agagagttggctgaataaatctaatatgaccagacacggaggggactgca
ggagcttgctggggaaaggccaagctgggagagttggctgtgcaacaagg
tgaatggtggtatcctctgcgtccagtaggtatgcacatcgcctatcctg
ctctaccgcacggaagggcaaactactaagcctgttgtccgtattattgt
gcaggctgtggtcttggaaaggaatagtggaggcacggcagaaagaggaa
tatgtctcagaaaacactactaagtttaaagacactactaaggccgatga
gagtagtggtgtgtacctttaaggcagagccagggtttctgagttcaagg
ccagcttggcctatgaagtaaattccaggacagttggggctaacagataa
accctgtgcacccaatcaaaagacagccccctgagagaagttgacgacag
tggaagatgtctttttggctgga
ctgaaaggagaagggagtcacctcatccatcaggaggattcatcagattt
actgttccgagagcgcaaacatggcacacacaccacatacacacatacac
cacacatcacataccacacacacacacacacacacacacacaccctcacc
cgcacccgtacacgcacccgcacacacacaccaggagtgtacattagtgg
caatgtcatacattgtggtggacacacaaatacagggcagggtgtccaga
agacttgatacactggatggcacacagcacacaaagaggcacacaacaca
catagtagatgcccatagaagtagatgccacacataaatacacacaagca
tacacccatggaggcacacatgaatattcacaggcaaatactctagccca
caccagcacacaaactagaaaaatgtgtgtgtgtgtgtgtgtgtgtgtgt
gtggtggggtggggggggggtgtgtgtgtgtggggggtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_94461809_94462739
seq2: B6Ng01-050M01.b_41_963 (reverse)

seq1  TCCAGCCAAAAAGACATCTTCCAACTTGTCCGTCCAACTTCTTCTCAGGG  50
      |||||||||||||||||||||||   ||| ||| ||||||| ||||| ||
seq2  TCCAGCCAAAAAGACATCTTCCA--CTGT-CGT-CAACTTC-TCTCA-GG  44

seq1  GGGCTGTCTTTTGATTGGGTGCACAGGGTTTATCTGTTTAGCCCCAACTG  100
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GGGCTGTCTTTTGATTGGGTGCACAGGGTTTATCTG-TTAGCCCCAACTG  93

seq1  TCCTGGAATTTACTTCATAGGCCAAGCTGGCCTTGAACTCAGAAACCCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGAATTTACTTCATAGGCCAAGCTGGCCTTGAACTCAGAAACCCTG  143

seq1  GCTCTGCCTTAAAGGTACACACCACTACTCTCATCGGCCTTAGTAGTGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGCCTTAAAGGTACACACCACTACTCTCATCGGCCTTAGTAGTGTC  193

seq1  TTTTAAACTTAGTAGTGTTTTCTGAGACATATTCCTCTTTCTGCCGTGCC  250
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TTTAAACTTAGTAGTGTTTTCTGAGACATATTCCTCTTTCTGCCGTGCC  242

seq1  TCCACTATTCCTTTCCAAGACCACAGCCTGCACAATAATACGGACAACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTATTCCTTTCCAAGACCACAGCCTGCACAATAATACGGACAACAG  292

seq1  GCTTAGTAGTTTGCCCTTCCGTGCGGTAGAGCAGGATAGGCGATGTGCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAGTAGTTTGCCCTTCCGTGCGGTAGAGCAGGATAGGCGATGTGCAT  342

seq1  ACCTACTGGACGCAGAGGATACCACCATTCACCTTGTTGCACAGCCAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACTGGACGCAGAGGATACCACCATTCACCTTGTTGCACAGCCAACT  392

seq1  CTCCCAGCTTGGCCTTTCCCCAGCAAGCTCCTGCAGTCCCCTCCGTGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAGCTTGGCCTTTCCCCAGCAAGCTCCTGCAGTCCCCTCCGTGTCT  442

seq1  GGTCATATTAGATTTATTCAGCCAACTCTCTCCTGCCAACCCCTTTCCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATATTAGATTTATTCAGCCAACTCTCTCCTGCCAACCCCTTTCCCA  492

seq1  GATCTTGCACTGAAGACAGATGAAAAAATGGGCCCAGAAGTGGTAATGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTGCACTGAAGACAGATGAAAAAATGGGCCCAGAAGTGGTAATGAC  542

seq1  TGAAAGGAGGAAGGAAGCCGGGCAGTGGTGGTACAGGTCTTTAGTCTCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGGAGGAAGGAAGCCGGGCAGTGGTGGTACAGGTCTTTAGTCTCTG  592

seq1  CACTCAGAAGGCAGAGTCAGGCAGATCTCTGTGATTTCAAGGCTAGCCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCAGAAGGCAGAGTCAGGCAGATCTCTGTGATTTCAAGGCTAGCCTG  642

seq1  GTGTACAGAGCGAGTTTCAGGACAACCACAGCTACAGAGAGAACCCTGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTACAGAGCGAGTTTCAGGACAACCACAGCTACAGAGAGAACCCTGCT  692

seq1  CCAAAAAGTAGAGGAGGTGGTGGAGGAAAAGAAGGAAGGAAAAGAAAACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAAGTAGAGGAGGTGGTGGAGGAAAAGAAGGAAGGAAAAGAAAACA  742

seq1  AAGGAAGGAAAGATCTGTTATACTCAGTGCCCTGTGGACCCCCAAACGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGGAAAGATCTGTTATACTCAGTGCCCTGTGGACCCCCAAACGGT  792

seq1  CCCCACATTTTTCACGGGAGTTAATACAGCTGAGAGAATGCCCTAGCAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACATTTTTCACGGGAGTTAATACAGCTGAGAGAATGCCCTAGCAGT  842

seq1  ATTCAGCTCTATTCCTCGGGTGTACTGTTAAAAAGCCTCCACTCCTGGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGCTCTATTCCTCGGGTGTACTGTTAAAAAGCCTCCACTCCTGGCT  892

seq1  CTGTGTACCACATGGGACGCATACAGAATTC  931
      |||||||||||||||||||||||||||||||
seq2  CTGTGTACCACATGGGACGCATACAGAATTC  923

seq1: chr11_94340929_94341411
seq2: B6Ng01-050M01.g_69_569

seq1  GAATTCCTGAAAGGAGAAGGGAGTCACCTCATCCATCAGGAGGATTCATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGAAAGGAGAAGGGAGTCACCTCATCCATCAGGAGGATTCATC  50

seq1  AGATTTACTGTTCCGAGAGCGCAAACATGGCACACACACCACATACACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTACTGTTCCGAGAGCGCAAACATGGCACACACACCACATACACAC  100

seq1  ATACACCACACATCACATACCACACACACACACACACACACACACACACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACCACACATCACATACCACACACACACACACACACACACACACACC  150

seq1  CTCACCCGCACCCGTACACGCACCCGCACACACACACCAGGAGTGTACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCCGCACCCGTACACGCACCCGCACACACACACCAGGAGTGTACAT  200

seq1  TAGTGGCAATGTCATACATTGTGGTGGACACACAAATACAGGGCAGGGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGGCAATGTCATACATTGTGGTGGACACACAAATACAGGGCAGGGTG  250

seq1  TCCAGAAGACTTGATACACTGGATGGCACACAGCACACAAAGAGGCACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAAGACTTGATACACTGGATGGCACACAGCACACAAAGAGGCACAC  300

seq1  AACACACATAGTAGATGCCCATAGAAGTAGATGCCACACATAAATACACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACACATAGTAGATGCCCATAGAAGTAGATGCCACACATAAATACACA  350

seq1  CAAGCATACACCCATGGAGGCACACATGAATATTCACAGGCAAATACTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCATACACCCATGGAGGCACACATGAATATTCACAGGCAAATACTCT  400

seq1  AGCCCACACCAGCACACAAACTAGAAAAATGTGTGTGTGTGTGTGTGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCACACCAGCACACAAACTAGAAAAATGTGTGTGTGTGTGTGTGTGT  450

seq1  GTGTGTGT-----------------GTGTGTGTGTGT-GTGTGTGTGTGT  482
      ||||||||                 |||||||||||| | | ||||||||
seq2  GTGTGTGTGGTGGGGTGGGGGGGGGGTGTGTGTGTGTGGGGGGTGTGTGT  500

seq1  G  483
      |
seq2  G  501