BAC Information

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BAC

Clone NameB6Ng01-053D08
Chromosome11 (Build37)
Map Location 76,585,187 - 76,707,728
singlet/doubletdoublet
Overlap geneCpd
Upstream geneDoc2b, Rph3al, 1700016K19Rik, 1500005K14Rik, Vps53, LOC668634, 2310047D13Rik, Gemin4, Dbil5, Glod4, Rnmtl1, Nxn, Timm22, Abr, LOC100043483, A830053O21Rik, Tusc5, Gosr1
Downstream geneTmigd1, Blmh, Slc6a4, Ccdc55, Efcab5, LOC628108, Ssh2, LOC544800, Coro6, Ankrd13b, 2210008F06Rik, Git1, Trp53i13, 1300007F04Rik, Taok1, LOC668641, Nufip2, Cryba1, LOC100043506, Myo18a, Pipox
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-053D08.bB6Ng01-053D08.g
ACCDH876324DH876325
length1,138779
definitionDH876324|Mus musculus domesticus DNA, BAC clone: B6Ng01-053D08, 5' end.DH876325|Mus musculus domesticus DNA, BAC clone: B6Ng01-053D08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,706,580 - 76,707,728)(76,585,187 - 76,585,962)
sequence
gaattctaagacttcctcatccaaaaagggagaggaagtggtggtggcac
ccccaaacaagacggtccaccaactgcctcacctgcaaagtctactttcc
ttctcagtggtccggcctcagaactgactggcgcaagctaatggagcctc
agcttcaggtactatcatttgcacagacctctttaaaggccctcgccatt
aatcactaaatgtttggaatctggtactcttttccttaaaggggcctctc
cattagaagcatcaagccccacgggtcctggctttagcccccactggctc
cagtacagaggtttgaaagggagaggaaaaggaggccaggggttccaaag
ggaagtacccgccccaagactaacaagggaggggcttcctgtgggggtcg
agggttcattcaagggccaaagaccccagcagctacttcactgccaaggg
ctgatgaattatggggccatcagaggtgagggagtcctcctcctgctggc
ctgaaggttcctgtggctggcagcagtttgcctgaatctttacagacagg
cctgccccatcctgttagctgtttcctgaataaacaatagtcttgccaac
cattgtgtcgattttgaaagaaggaggggggaaaacctccagaaggaaag
ttatagactccctaagctgtgaactttgcaaagggataaatgataaacca
ggaagcgacctgcttgtagttccggtatctatcagtccttggttaacctc
cattttacctttcccaacacctgaggtcacaaaatgccccaaatcccatc
ccacgggatttgagatctgagttcaagagcttggctgccttgccaataat
ttccttttgcaaactagtcattttcgatttggtatacagtgcaatgggca
aatggacctggttctgtgaggagtttgtgggaatagggcactatggggaa
agaggaagagataacaatcccacataacagctgaggctgcctcacttgat
ccagtgtctccctgagccaaggaggaagtgaaagaaaaaaagcgggttcc
aaaaaaggtcagaagcctagattccactaattgtttgccagctttgagaa
tcccacccttaaagtgctctctgctcaagcttcataaa
gaattctctgtgtacctatggaagatgcttctactctgtttcctgcttgg
gtgacgaggccttgatgtcccaccctgctcacatcccacaacacgtagta
ttctctggcttcccacattcaggtaaccatggcaactctctctcttgctt
tccatcactccttactcccatcctccccccatttattaaaaatttgagat
gcatgttctaatctgtagtttaggaggtcttgaggtatacagcctggact
ggcctcaaatttgcagtgatcctcctgcctcagttttcttttactttttt
tttttttaaaaaaaagatttatttattattatgcataagtacattgtacc
tgacttcagatgcaccagaagagggcatcagatctcattacagatggttg
tgagccaccatgtggttgctggtatttgaactcaggacctttggaagagc
agtcagtgctcttaaccactgagtcatctctccagcccctgcctcagttt
tctaacttgtagaaattacaggtcttaacctgatacagccttcctttgct
gtttcttttgatgggtaacttttggtaaaatgctgtcttatacatacaac
ttttttttttttttttacatacaactttttaagaaattgaaactcaaaaa
aaaaaaaaaaaaagaaaagaaattgaaactctggatagttggatgattat
cctccactgaatagaatttttcttttggaaattcttattatccccatgtg
tgtgtgtgtgtgtatgtgtgggggtgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_76706580_76707728
seq2: B6Ng01-053D08.b_44_1181 (reverse)

seq1  TTTATTGAAGCTGTAGCAGAGAGCACCCTGTTAGGGGTGGAGTCTCCAAA  50
      |||| |||||||  |||||||||||  || | ||||  ||| ||| ||||
seq2  TTTA-TGAAGCTTGAGCAGAGAGCA--CTTTAAGGGTGGGATTCT-CAAA  46

seq1  GCTGGCAGACCATTTAGTGGACTCTGGGCCTCTGGACCCTCTTTTGAACC  100
      ||||||| | || |||||||| ||| ||| ||| |||| | ||| |||||
seq2  GCTGGCA-AACAATTAGTGGAATCTAGGCTTCT-GACCTTTTTTGGAACC  94

seq1  CGCTCTTTTTTCTTTCACTTCCTCCTTGGCTCAGGGAGACACTGGAGTCA  150
      |||| ||||||||||||||||||||||||||||||||||||||||| |||
seq2  CGCT-TTTTTTCTTTCACTTCCTCCTTGGCTCAGGGAGACACTGGA-TCA  142

seq1  AGTGAGGCAGCCTCCAGCTGTTATGTGGGAATGTTATCTCTTCCTCTCTC  200
      ||||||||||||| |||||||||||||||| |||||||||||||||| ||
seq2  AGTGAGGCAGCCT-CAGCTGTTATGTGGGATTGTTATCTCTTCCTCTTTC  191

seq1  CCCATAGTGCCCTATTCCCCACAAACTCCTCACAGAACCAGGTCCATTTG  250
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CCCATAGTGCCCTATT-CCCACAAACTCCTCACAGAACCAGGTCCATTTG  240

seq1  CCCATTGCACTGTATACCAAATTCGAAAATGACTAGTTTTGCAAAAGGAA  300
      ||||||||||||||||||||| |||||||||||||| |||||||||||||
seq2  CCCATTGCACTGTATACCAAA-TCGAAAATGACTAG-TTTGCAAAAGGAA  288

seq1  ATTATTGGCAAGGCAGCCAAGCTCTTGAACTCAGATCTCAAATCCCGTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTGGCAAGGCAGCCAAGCTCTTGAACTCAGATCTCAAATCCCGTGG  338

seq1  GATGGGATTTGGGGCATTTTGTGACCTCAGGTGTTGGGAAAGGT-AAATG  399
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GATGGGATTTGGGGCATTTTGTGACCTCAGGTGTTGGGAAAGGTAAAATG  388

seq1  GAGGTTAACCAAGGACTGATAGATACCGGAACTACAAGCAGGTCGCTTCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTAACCAAGGACTGATAGATACCGGAACTACAAGCAGGTCGCTTCC  438

seq1  TGGTTTATCATTTATCCCTTTGCAAAGTTCACAGCTTAGGGAGTCTATAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTATCATTTATCCCTTTGCAAAGTTCACAGCTTAGGGAGTCTATAA  488

seq1  CTTTCCTTCTGGAGGTTTTCCCCCCTCCTTCTTTCAAAATCGACACAATG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTTCTGGAGGTTTTCCCCCCTCCTTCTTTCAAAATCGACACAATG  538

seq1  GTTGGCAAGACTATTGTTTATTCAGGAAACAGCTAACAGGATGGGGCAGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGCAAGACTATTGTTTATTCAGGAAACAGCTAACAGGATGGGGCAGG  588

seq1  CCTGTCTGTAAAGATTCAGGCAAACTGCTGCCAGCCACAGGAACCTTCAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCTGTAAAGATTCAGGCAAACTGCTGCCAGCCACAGGAACCTTCAG  638

seq1  GCCAGCAGGAGGAGGACTCCCTCACCTCTGATGGCCCCATAATTCATCAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCAGGAGGAGGACTCCCTCACCTCTGATGGCCCCATAATTCATCAG  688

seq1  CCCTTGGCAGTGAAGTAGCTGCTGGGGTCTTTGGCCCTTGAATGAACCCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGGCAGTGAAGTAGCTGCTGGGGTCTTTGGCCCTTGAATGAACCCT  738

seq1  CGACCCCCACAGGAAGCCCCTCCCTTGTTAGTCTTGGGGCGGGTACTTCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACCCCCACAGGAAGCCCCTCCCTTGTTAGTCTTGGGGCGGGTACTTCC  788

seq1  CTTTGGAACCCCTGGCCTCCTTTTCCTCTCCCTTTCAAACCTCTGTACTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGAACCCCTGGCCTCCTTTTCCTCTCCCTTTCAAACCTCTGTACTG  838

seq1  GAGCCAGTGGGGGCTAAAGCCAGGACCCGTGGGGCTTGATGCTTCTAATG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAGTGGGGGCTAAAGCCAGGACCCGTGGGGCTTGATGCTTCTAATG  888

seq1  GAGAGGCCCCTTTAAGGAAAAGAGTACCAGATTCCAAACATTTAGTGATT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGCCCCTTTAAGGAAAAGAGTACCAGATTCCAAACATTTAGTGATT  938

seq1  AATGGCGAGGGCCTTTAAAGAGGTCTGTGCAAATGATAGTACCTGAAGCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCGAGGGCCTTTAAAGAGGTCTGTGCAAATGATAGTACCTGAAGCT  988

seq1  GAGGCTCCATTAGCTTGCGCCAGTCAGTTCTGAGGCCGGACCACTGAGAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTCCATTAGCTTGCGCCAGTCAGTTCTGAGGCCGGACCACTGAGAA  1038

seq1  GGAAAGTAGACTTTGCAGGTGAGGCAGTTGGTGGACCGTCTTGTTTGGGG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGTAGACTTTGCAGGTGAGGCAGTTGGTGGACCGTCTTGTTTGGGG  1088

seq1  GTGCCACCACCACTTCCTCTCCCTTTTTGGATGAGGAAGTCTTAGAATTC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCACCACCACTTCCTCTCCCTTTTTGGATGAGGAAGTCTTAGAATTC  1138

seq1: chr11_76585187_76585962
seq2: B6Ng01-053D08.g_69_847

seq1  GAATTCTCTGTGTACCTATGGAAGATGCTTCTACTCTGTTTCCTGCTTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGTGTACCTATGGAAGATGCTTCTACTCTGTTTCCTGCTTGG  50

seq1  GTGACGAGGCCTTGATGTCCCACCCTGCTCACATCCCACAACACGTAGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACGAGGCCTTGATGTCCCACCCTGCTCACATCCCACAACACGTAGTA  100

seq1  TTCTCTGGCTTCCCACATTCAGGTAACCATGGCAACTCTCTCTCTTGCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGGCTTCCCACATTCAGGTAACCATGGCAACTCTCTCTCTTGCTT  150

seq1  TCCATCACTCCTTACTCCCATCCTCCCCCCATTTATTAAAAATTTGAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCACTCCTTACTCCCATCCTCCCCCCATTTATTAAAAATTTGAGAT  200

seq1  GCATGTTCTAATCTGTAGTTTAGGAGGTCTTGAGGTATACAGCCTGGACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTTCTAATCTGTAGTTTAGGAGGTCTTGAGGTATACAGCCTGGACT  250

seq1  GGCCTCAAATTTGCAGTGATCCTCCTGCCTCAGTTTTCTTTTACTTTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCAAATTTGCAGTGATCCTCCTGCCTCAGTTTTCTTTTACTTTTTT  300

seq1  TTTTTTTAAAAAAAAGATTTATTTATTATTATGCATAAGTACATTGTACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTAAAAAAAAGATTTATTTATTATTATGCATAAGTACATTGTACC  350

seq1  TGACTTCAGATGCACCAGAAGAGGGCATCAGATCTCATTACAGATGGTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTCAGATGCACCAGAAGAGGGCATCAGATCTCATTACAGATGGTTG  400

seq1  TGAGCCACCATGTGGTTGCTGGTATTTGAACTCAGGACCTTTGGAAGAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCACCATGTGGTTGCTGGTATTTGAACTCAGGACCTTTGGAAGAGC  450

seq1  AGTCAGTGCTCTTAACCACTGAGTCATCTCTCCAGCCCCTGCCTCAGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGTGCTCTTAACCACTGAGTCATCTCTCCAGCCCCTGCCTCAGTTT  500

seq1  TCTAACTTGTAGAAATTACAGGTCTTAACCTGATACAGCCTTCCTTTGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACTTGTAGAAATTACAGGTCTTAACCTGATACAGCCTTCCTTTGCT  550

seq1  GTTTCTTTTGATGGGTAACTTTTGGTAAAATGCTGTCTTATACATACAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTTTGATGGGTAACTTTTGGTAAAATGCTGTCTTATACATACAAC  600

seq1  TTTTTTTTTTTTTTTTACATACAACTTTTTAAGAAATTGAAACTC-AAAA  649
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TTTTTTTTTTTTTTTTACATACAACTTTTTAAGAAATTGAAACTCAAAAA  650

seq1  AAAAAAAAAAAAAGAAAAGAAATTGAAACTCTGGATAGTTGGATGATTAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAGAAAAGAAATTGAAACTCTGGATAGTTGGATGATTAT  700

seq1  CCTCCACTGAATAGAA-TTTTCTTTTGGAAATTCTTATTATCCCCATGTG  748
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CCTCCACTGAATAGAATTTTTCTTTTGGAAATTCTTATTATCCCCATGTG  750

seq1  TGTGTGTGTGTGTATGTGT-GGGGTGGGG  776
      ||||||||||||||||||| |||||||||
seq2  TGTGTGTGTGTGTATGTGTGGGGGTGGGG  779