BAC Information

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BAC

Clone NameB6Ng01-053J11
Chromosome11 (Build37)
Map Location 96,306,171 - 96,440,707
singlet/doubletdoublet
Overlap geneOTTMUSG00000001775, Skap1
Upstream geneSpop, LOC100039483, Nxph3, Ngfr, Phb, 1110035M17Rik, Zfp652, EG665273, Phospho1, Abi3, Gngt2, LOC100040014, B4galnt2, Igf2bp1, LOC100040040, Gip, Snf8, Ube2z, Atp5g1, Ndp52, Ttll6, Hoxb13, LOC432593, LOC100039639, Gm53, Hoxb9, Hoxb8, Hoxb7, Hoxb6, Hoxb5, Hoxb4, Hoxb3, Hoxb2, Hoxb1, LOC100040242
Downstream geneSnx11, Cbx1, LOC629750, Nfe2l1, Copz2, LOC100040373, LOC665436, Cdk5rap3, Atad4, Pnpo, D030028A08Rik, Sp2, Sp6, Scrn2, Lrrc46, Mrpl10, Osbpl7, Tbx21, Tbkbp1, Kpnb1, Npepps, EG665490, Mrpl45, Gpr179, Socs7, 4933428G20Rik, P140
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-053J11.bB6Ng01-053J11.g
ACCDH876595DH876596
length1,0321,094
definitionDH876595|Mus musculus domesticus DNA, BAC clone: B6Ng01-053J11, 5' end.DH876596|Mus musculus domesticus DNA, BAC clone: B6Ng01-053J11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,439,664 - 96,440,707)(96,306,171 - 96,307,262)
sequence
gaattcacagagatctcatacaaggccgggttcataaacaggtgaaatga
tggagtttattgcaacgcacatcaacactgaaactaaataactgtgttgc
catctcagtcccgctgaaagacggatggtaaacttgacctgccgctggta
ctatccgattgccattttttattcccccttcgctgcccccccccccaggc
tgagccacgttgagtaaatgcatgtgcacggtcaggtcagacccctggat
cgggtgaaactccgttcacatttgcatacaggcggagtctcacaatgaaa
gcccatctgttcccgtctcggagtacaaatcgattgtcacccaactcgct
gcaaacgacagcagcgtggccattaggtggaggaacactcggctcaggtt
acggatatggaactgctgacttgggtttaaatacctgataactgaagact
cttcattatacgtgaacaaagagtgaactttgaactgttcaggggataac
ttctcctaagattgggctcccccccccgttttatccattcctaatacttg
actgttatatttcccactgtctctgtttttgtataaaaattagccaggcc
gactgtcatgatgtcctaaataatcgcccccctcccctttaaagcgaggc
gtaggaggtggagcagcctcagagtatgttgtaaatagagggtgaactct
gaactctagatgccctcagaggtcgttaatatcatggtgatgttgttcct
tgaacttctgattttaccagggtggaatttttagttgtaagagtttaacc
aagtgtgaactgcctcagcccttcagcctccctgccaacccattcagtta
ctggaggcacctgtctctgagttctcctccgctcacgggcctcatgttta
ttccagagaagtttaccaatcacaatctgaatcagagaggatgttttccc
cccactcttcctgtctctttctcctttcttttaaaatcagcagtacctta
gagtttcggacgaaaacccgagtctgacaaaa
gaattctcagcttgaagggacctctgagaacgtgtgctttaacactctaa
ttttctggaactggaaaccggggcccagataagtgattaggttgatgtca
tgtactaagttaatggtggcattgggacaatactgctggatcctgattcc
cggtttagggctgttataacttcaaacgggaggctacacttacactgcta
gaatattatggatttgtatttctgagaacacacttcaactataaatagtt
tctctttctcctgtcataaatctctttctttccttcccatcattagatga
gaattgttattagaatccagggccgctattttattagctgtagcttttta
acttataaaattaaaaggtactggcataaagaagtgtccgccatacatta
aatggaatacaactattattcacttaaagctctgggcaatatcctgaggg
ttagtgggacacatttttcgatggccgctcttaacttgattatctcatga
acactgaagtccttcatgatgggataaccgcgtgccactcataagagcga
tgctaagagttcacaccagaacttgaagagtttaagatgcacatttcccc
tgttctttcagactactgtgcactatcatgcactagatagagacctctcc
cattttactcagtcctttacggacaggattaaagacgtctcacatgtctc
aagcctgtgggaaagttccccacacattctcccttttgcatccatttcgc
tcattttttgtaagatgagttcctaaaagtgcaatttctgggtcaaattt
tgagctaatctgtgacattcttcttcaaaaaatttttttcctgttgctag
gactaaaataaataaattccaacatctgtatatgactatatatcttatta
aggttttatataaatgaggttattttaacttcaatattgatttattatat
tatatgtgcatgaagggtttgcctgcacacacacacaaaccaacacacac
acacacacactaacacacacacactatctgtggtgctgctgtggcctgga
agctggaagaaggggcggatctcctgaaactggagttaaagcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_96439664_96440707
seq2: B6Ng01-053J11.b_47_1078 (reverse)

seq1  TTTTGTCAGACTCTGTGTTTTCTGTCTGTAAACTCTAAGGTACTTGCTGA  50
      ||||||||||||| | |||||| ||| | |||||||||||||| ||||| 
seq2  TTTTGTCAGACTC-GGGTTTTC-GTCCG-AAACTCTAAGGTAC-TGCTG-  45

seq1  ATTTTAAAGAGAAAGGAGAAAGAAGACAAGGGAGAGGTGGGGGGAAAAAC  100
      |||||||| ||||||||||||| |||| ||| ||| |||||||| |||||
seq2  ATTTTAAA-AGAAAGGAGAAAG-AGAC-AGGAAGA-GTGGGGGG-AAAAC  90

seq1  ATCCTCTCTGATTCAGATTGTGATTGGTAAACTTCTCTGGAATAAACATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCTCTGATTCAGATTGTGATTGGTAAACTTCTCTGGAATAAACATG  140

seq1  AGGCCCGTGAGCGGAGGAGAACTCAGAGACAGGTGCCTCCAGTAACTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCGTGAGCGGAGGAGAACTCAGAGACAGGTGCCTCCAGTAACTGAA  190

seq1  TGGGTTGGCAGGGAGGCTGAAGGGCTGAGGCAGTTCACACTTTGGTTAAA  250
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TGGGTTGGCAGGGAGGCTGAAGGGCTGAGGCAGTTCACAC-TTGGTTAAA  239

seq1  CTCTTACAACTAAAAATTCCACCCTGGTAAAATTCAGAAGTTCAAGGAAC  300
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CTCTTACAACTAAAAATTCCACCCTGGTAAAA-TCAGAAGTTCAAGGAAC  288

seq1  AACATCACCATGATATTAACGACCTCTGAGGGCATCTAGAGTTCAGAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCACCATGATATTAACGACCTCTGAGGGCATCTAGAGTTCAGAGTT  338

seq1  CACCCTCTATTTACAACATACTCTGAGGCTGCTCCACCTCCTACGCCTCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTCTATTTACAACATACTCTGAGGCTGCTCCACCTCCTACGCCTCG  388

seq1  CTTTAAAGGGGAGGGGGGCGATTATTTAGGACATCATGACAGTCGGCCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAAGGGGAGGGGGGCGATTATTTAGGACATCATGACAGTCGGCCTG  438

seq1  GCTAATTTTTATACAAAAACAGAGACAGTGGGAAATATAACAGTCAAGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAATTTTTATACAAAAACAGAGACAGTGGGAAATATAACAGTCAAGTA  488

seq1  TTAGGAATGGATAAAACGGGGGGGGGAGCCCAATCTTAGGAGAAGTTATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGAATGGATAAAACGGGGGGGGGAGCCCAATCTTAGGAGAAGTTATC  538

seq1  CCCTGAACAGTTCAAAGTTCACTCTTTGTTCACGTATAATGAAGAGTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAACAGTTCAAAGTTCACTCTTTGTTCACGTATAATGAAGAGTCTT  588

seq1  CAGTTATCAGGTATTTAAACCCAAGTCAGCAGTTCCATATCCGTAACCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTATCAGGTATTTAAACCCAAGTCAGCAGTTCCATATCCGTAACCTG  638

seq1  AGCCGAGTGTTCCTCCACCTAATGGCCACGCTGCTGTCGTTTGCAGCGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCGAGTGTTCCTCCACCTAATGGCCACGCTGCTGTCGTTTGCAGCGAG  688

seq1  TTGGGTGACAATCGATTTGTACTCCGAGACGGGAACAGATGGGCTTTCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTGACAATCGATTTGTACTCCGAGACGGGAACAGATGGGCTTTCAT  738

seq1  TGTGAGACTCCGCCTGTATGCAAATGTGAACGGAGTTTCACCCGATCCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGACTCCGCCTGTATGCAAATGTGAACGGAGTTTCACCCGATCCAG  788

seq1  GGGTCTGACCTGACCGTGCACATGCATTTACTCAACGTGGCTCAGCCTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTGACCTGACCGTGCACATGCATTTACTCAACGTGGCTCAGCCTGG  838

seq1  GGGGGGGGGCAGCGAAGGGGGAATAAAAAATGGCAATCGGATAGTACCAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGGGGCAGCGAAGGGGGAATAAAAAATGGCAATCGGATAGTACCAG  888

seq1  CGGCAGGTCAAGTTTACCATCCGTCTTTCAGCGGGACTGAGATGGCAACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCAGGTCAAGTTTACCATCCGTCTTTCAGCGGGACTGAGATGGCAACA  938

seq1  CAGTTATTTAGTTTCAGTGTTGATGTGCGTTGCAATAAACTCCATCATTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTATTTAGTTTCAGTGTTGATGTGCGTTGCAATAAACTCCATCATTT  988

seq1  CACCTGTTTATGAACCCGGCCTTGTATGAGATCTCTGTGAATTC  1044
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGTTTATGAACCCGGCCTTGTATGAGATCTCTGTGAATTC  1032

seq1: chr11_96306171_96307262
seq2: B6Ng01-053J11.g_67_1160

seq1  GAATTCTCAGCTTGAAGGGACCTCTGAGAACGTGTGCTTTAACACTCTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGCTTGAAGGGACCTCTGAGAACGTGTGCTTTAACACTCTAA  50

seq1  TTTTCTGGAACTGGAAACCGGGGCCCAGATAAGTGATTAGGTTGATGTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGGAACTGGAAACCGGGGCCCAGATAAGTGATTAGGTTGATGTCA  100

seq1  TGTACTAAGTTAATGGTGGCATTGGGACAATACTGCTGGATCCTGATTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTAAGTTAATGGTGGCATTGGGACAATACTGCTGGATCCTGATTCC  150

seq1  CGGTTTAGGGCTGTTATAACTTCAAACGGGAGGCTACACTTACACTGCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTTTAGGGCTGTTATAACTTCAAACGGGAGGCTACACTTACACTGCTA  200

seq1  GAATATTATGGATTTGTATTTCTGAGAACACACTTCAACTATAAATAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATTATGGATTTGTATTTCTGAGAACACACTTCAACTATAAATAGTT  250

seq1  TCTCTTTCTCCTGTCATAAATCTCTTTCTTTCCTTCCCATCATTAGATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTCTCCTGTCATAAATCTCTTTCTTTCCTTCCCATCATTAGATGA  300

seq1  GAATTGTTATTAGAATCCAGGGCCGCTATTTTATTAGCTGTAGCTTTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGTTATTAGAATCCAGGGCCGCTATTTTATTAGCTGTAGCTTTTTA  350

seq1  ACTTATAAAATTAAAAGGTACTGGCATAAAGAAGTGTCCGCCATACATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATAAAATTAAAAGGTACTGGCATAAAGAAGTGTCCGCCATACATTA  400

seq1  AATGGAATACAACTATTATTCACTTAAAGCTCTGGGCAATATCCTGAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAATACAACTATTATTCACTTAAAGCTCTGGGCAATATCCTGAGGG  450

seq1  TTAGTGGGACACATTTTTCGATGGCCGCTCTTAACTTGATTATCTCATGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGGGACACATTTTTCGATGGCCGCTCTTAACTTGATTATCTCATGA  500

seq1  ACACTGAAGTCCTTCATGATGGGATAACCGCGTGCCACTCATAAGAGCGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGAAGTCCTTCATGATGGGATAACCGCGTGCCACTCATAAGAGCGA  550

seq1  TGCTAAGAGTTCACACCAGAACTTGAAGAGTTTAAGATGCACATTTCCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAAGAGTTCACACCAGAACTTGAAGAGTTTAAGATGCACATTTCCCC  600

seq1  TGTTCTTTCAGACTACTGTGCACTATCATGCACTAGATAGAGACCTCTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTTCAGACTACTGTGCACTATCATGCACTAGATAGAGACCTCTCC  650

seq1  CA-TTTACTCAGTCCTTTACGGACAGGATTAAAGACGTCTCACATGTCTC  699
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTACTCAGTCCTTTACGGACAGGATTAAAGACGTCTCACATGTCTC  700

seq1  AAGCCTGTGGGAAAGTTCCCCACACATTCTCCCTTTTGCATCCA-TTCGC  748
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AAGCCTGTGGGAAAGTTCCCCACACATTCTCCCTTTTGCATCCATTTCGC  750

seq1  TCA-TTTTTGTAAGATGAGTTCCTAAAAGTGCAATTTCTGGGTCAAATTT  797
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTTTGTAAGATGAGTTCCTAAAAGTGCAATTTCTGGGTCAAATTT  800

seq1  TGAGCTAATCTGTGACATTCTTCTTCAAAAAATTTTTTTCCTGTTGCTAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTAATCTGTGACATTCTTCTTCAAAAAATTTTTTTCCTGTTGCTAG  850

seq1  GACTAAAATAAATAAATTCCAACATCTGTATATGACTATATATCTTATTA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAAAATAAATAAATTCCAACATCTGTATATGACTATATATCTTATTA  900

seq1  AGGTTTTTATATAAATGAGGTTATTTTAACTTCAATATTGATTTAATTAT  947
      ||| |||||||||||||||||||||||||||||||||||||||| |||||
seq2  AGG-TTTTATATAAATGAGGTTATTTTAACTTCAATATTGATTT-ATTAT  948

seq1  ATTATATGTGCATGAAGGTTTTGCCTGCACACACACACAAACACACACAC  997
      |||||||||||||||||| |||||||||||||||||||||||  ||||||
seq2  ATTATATGTGCATGAAGGGTTTGCCTGCACACACACACAAACCAACACAC  998

seq1  ACACACACACACATACACACACACACTATCTGT-GTGCTGCTGT-GCCTG  1045
      ||||||||||||  ||||||||||||||||||| |||||||||| |||||
seq2  ACACACACACACTAACACACACACACTATCTGTGGTGCTGCTGTGGCCTG  1048

seq1  GAAGCTGGAAGAAGGTGCTGGATCTCCTGAAACTGGAGTTAAAGCCA  1092
      ||||||||||||||| || ||||||||||||||||||||||||||||
seq2  GAAGCTGGAAGAAGGGGC-GGATCTCCTGAAACTGGAGTTAAAGCCA  1094