BAC Information

Click to search

BAC

Clone NameB6Ng01-053K05
Chromosome11 (Build37)
Map Location 111,843,372 - 111,844,442
singlet/doubletsinglet
Overlap genenone
Upstream geneKcnj16, Kcnj2, LOC667003, LOC100041539, LOC100041559, EG629966, LOC629967
Downstream geneLOC100041589, LOC100043020, EG668396, EG667038, LOC100041610, LOC671963, LOC667047, BC006965, Sox9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-053K05.bB6Ng01-053K05.g
ACCDH876631DH876632
length1,0401,073
definitionDH876631|Mus musculus domesticus DNA, BAC clone: B6Ng01-053K05, 5' end.DH876632|Mus musculus domesticus DNA, BAC clone: B6Ng01-053K05, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcagggaaacactgtgagacatggactcctccttcttatctggtct
ccactttcatcactagaatccgtctttctgctagagaaagtgaaaacatt
agaagcatgttacagaagtagcccaaacagcatagagattgccccaacct
catcctcaaagcagactctcctttcccaagtcagcttctctagcttcaag
tgctcttggtgaggttctaccatagaggaatgaggctacttatcactgag
catttttttttctaataaagatttttctctggactaacagcttcaggctt
ctttgtaaaaatttccttcacatttcactcaagaaactaacatctgcaaa
cacatggggcagcattgtagtgagaggtcaaacatactgagctcactgca
ttggacagtcacagctctttctttaaaataattataaaatatcatgtatt
gtataaagaaagaggagccctgcaaaaagaacattgcttttctgaaaagc
agttattataaccttctcgatagacaatgagtattctttagcatacaatt
gggaaatggccaaaaaacatttttcttaaaatacataacaccatggccgc
cattgccaccacccacattttttatttgggaagccaaaaataaaaaataa
atttaaatccctaatggtttggggggttaggggcccccaaaaaaggggcc
aaaaatttcttttggccggaaattttcctaaccggaaaaacctggggcct
tttaaaaaaaaaaagcccccccccccccgtgagaaaccattttggttttt
ttttataggttttagtgagggggttcttccaaaaatatacatagacccaa
aaaaaaattttttgtaagcccgaaattatatatttttgtgtgtatattgt
gggctatatccgagttttgcgcgcagaagagagaaaaatctctccagcga
agttttctcctctgatggttcttataataaaaaaaagagcgccacttata
tcccgaaaaatatgagacactcccttatattgcgccgtat
gaattcacaggtgtcgttgcatcttgtttttttgagacaagatcttccat
tggtttaatgttcactgatattatttttctaggccgacttgccggctatc
agcagagatgcacctctcagggctagaactccatcacacccagattcctc
acactagctctgaagaccaaacacggggtcatcctggaatgtgataagta
cttcattgactgagctggcttctcagcctcatatattcagggatacaaag
cctctgtggcttccagttctaaactacatatcccttgtctgaagtcacat
acagggtattgagtgcctgagatttaacgcattaatacgtgagctttatg
aaagtgtgaccatgctgatgttttatgcctgtacaattgtttataaacct
ttaagtgactgccgagtgatcagagtttgagaatgatctaggagtgtgtt
gtatttagtacatcaggcatacaaaatgctcagtaagagacataaataca
tcggttacttttattgctgtgctgagttcctgggaaagtcatgtggctgc
aaatttctgattaccaccctcttcttaaaccgggctacagctgagatgct
caaatgtttcaatagcacagtactatggtgatacactgtcagccacttct
gactctggttcatagaccattggttattttcaaggatcgattattttgct
taaggtggtagtattaggaaggagtcccagtgtcaaaaaaactaaccaaa
ccattagctttccaaataacacaagtgttttgtaagtcgtagaggaatat
aaaaggaagaacagataaagacagagacaggtcgttccatggcactttat
ggctagctctagctaagagttatgggtgagcattatgatgctttgcacat
ggccccctgtggtccaatatgattttatttttagatgtttaaaactggga
ttgtggaccccagccattcacatagccgtatgcaaaaattatggagttgg
aaaccctggccttgcaccctcggctcattttaaggcttttgatcctcggt
ttctttccttgccggcagcattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_111843372_111844442
seq2: B6Ng01-053K05.g_69_1141 (reverse)

seq1  AAATGCTGCC-GCAAAGACAGAAAACCGAGAATCAAAAGGCTTAAAATGA  49
      |||||||||| |||| || || |||||||| |||||||| ||||||||||
seq2  AAATGCTGCCGGCAAGGAAAG-AAACCGAGGATCAAAAGCCTTAAAATGA  49

seq1  GCCGA-GGTGCAGAGCCAGGGTTTCCAACT-CATATTTCTTGCATACGGC  97
      ||||| ||||||  |||||||||||||||| |||| || |||||||||||
seq2  GCCGAGGGTGCAAGGCCAGGGTTTCCAACTCCATAATTTTTGCATACGGC  99

seq1  TATGTGAATGGCTTGGGTCCACAATCCAAGTTTTAAACATCTAAAAATAA  147
      ||||||||||||| ||||||||||||| ||||||||||||||||||||||
seq2  TATGTGAATGGCTGGGGTCCACAATCCCAGTTTTAAACATCTAAAAATAA  149

seq1  AATCATATTGGACCACAGGGGGCCATGTGCAAAGCATCATAATGCTCACC  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATATTGGACCACAGGGGGCCATGTGCAAAGCATCATAATGCTCACC  199

seq1  CATAACTCTTAGCTAGAGCTAGCCATAAAGTGCCATGGAACGACCTGTCT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACTCTTAGCTAGAGCTAGCCATAAAGTGCCATGGAACGACCTGTCT  249

seq1  CTGTCTTTATCTGTTCTTCCTTTTATATTCCTCTACGACTTACAAAACAC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTTATCTGTTCTTCCTTTTATATTCCTCTACGACTTACAAAACAC  299

seq1  TTGTGTTATTTGGAAAGCTAATGGTTTGGTTAGTTTTTTTGACACTGGGA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTTATTTGGAAAGCTAATGGTTTGGTTAGTTTTTTTGACACTGGGA  349

seq1  CTCCTTCCTAATACTACCACCTTAAGCAAAATAATCGATCCTTGAAAATA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTCCTAATACTACCACCTTAAGCAAAATAATCGATCCTTGAAAATA  399

seq1  ACCAATGGTCTATGAACCAGAGTCAGAAGTGGCTGACAGTGTATCACCAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATGGTCTATGAACCAGAGTCAGAAGTGGCTGACAGTGTATCACCAT  449

seq1  AGTACTGTGCTATTGAAACATTTGAGCATCTCAGCTGTAGCCCGGTTTAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTGTGCTATTGAAACATTTGAGCATCTCAGCTGTAGCCCGGTTTAA  499

seq1  GAAGAGGGTGGTAATCAGAAATTTGCAGCCACATGACTTTCCCAGGAACT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGGGTGGTAATCAGAAATTTGCAGCCACATGACTTTCCCAGGAACT  549

seq1  CAGCACAGCAATAAAAGTAACCGATGTATTTATGTCTCTTACTGAGCATT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACAGCAATAAAAGTAACCGATGTATTTATGTCTCTTACTGAGCATT  599

seq1  TTGTATGCCTGATGTACTAAATACAACACACTCCTAGATCATTCTCAAAC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATGCCTGATGTACTAAATACAACACACTCCTAGATCATTCTCAAAC  649

seq1  TCTGATCACTCGGCAGTCACTTAAAGGTTTATAAACAATTGTACAGGCAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATCACTCGGCAGTCACTTAAAGGTTTATAAACAATTGTACAGGCAT  699

seq1  AAAACATCAGCATGGTCACACTTTCATAAAGCTCACGTATTAATGCGTTA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATCAGCATGGTCACACTTTCATAAAGCTCACGTATTAATGCGTTA  749

seq1  AATCTCAGGCACTCAATACCCTGTATGTGACTTCAGACAAGGGATATGTA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCAGGCACTCAATACCCTGTATGTGACTTCAGACAAGGGATATGTA  799

seq1  GTTTAGAACTGGAAGCCACAGAGGCTTTGTATCCCTGAATATATGAGGCT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGAACTGGAAGCCACAGAGGCTTTGTATCCCTGAATATATGAGGCT  849

seq1  GAGAAGCCAGCTCAGTCAATGAAGTACTTATCACATTCCAGGATGACCCC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGCCAGCTCAGTCAATGAAGTACTTATCACATTCCAGGATGACCCC  899

seq1  GTGTTTGGTCTTCAGAGCTAGTGTGAGGAATCTGGGTGTGATGGAGTTCT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTGGTCTTCAGAGCTAGTGTGAGGAATCTGGGTGTGATGGAGTTCT  949

seq1  AGCCCTGAGAGGTGCATCTCTGCTGATAGCCGGCAAGTCGGCCTAGAAAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTGAGAGGTGCATCTCTGCTGATAGCCGGCAAGTCGGCCTAGAAAA  999

seq1  ATAATATCAGTGAACATTAAACCAATGGAAGATCTTGTCTCAAAAAAACA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATATCAGTGAACATTAAACCAATGGAAGATCTTGTCTCAAAAAAACA  1049

seq1  AGATGCAACGACACCTGTGAATTC  1071
      ||||||||||||||||||||||||
seq2  AGATGCAACGACACCTGTGAATTC  1073