BAC Information

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BAC

Clone NameB6Ng01-053M21
Chromosome11 (Build37)
Map Location 112,411,586 - 112,555,995
singlet/doubletdoublet
Overlap geneLOC100041610, LOC671963, LOC667047, BC006965
Upstream geneLOC100041559, EG629966, LOC629967, LOC100041589, LOC100043020, EG668396, EG667038
Downstream geneSox9, 2610035D17Rik, Slc39a11, Sstr2, Cog1, D11Wsu99e, D11Wsu47e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-053M21.bB6Ng01-053M21.g
ACCDH876741DH876742
length91739
definitionDH876741|Mus musculus domesticus DNA, BAC clone: B6Ng01-053M21, 5' end.DH876742|Mus musculus domesticus DNA, BAC clone: B6Ng01-053M21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,555,907 - 112,555,995)(112,411,586 - 112,412,323)
sequence
gaattccccttcacacccacccagaagtccattatactaaacatgtggta
acttctttgggttggtgtgtgtgtttgtgtgtgtgtgtgta
gaattctctctgttgcaagatcgtttgagagtagagaccaaaataacact
ctcaccacaaacagtaggtatctaaacaaagtttggcatggaacatcttg
ggtgagatgttctgctaagtgacccactgttgtggaggtttgtatgtgag
catgtggaatgggtgccaagcaatctaagtattttctttagctctggatc
ctattcagagggattttttttctctttcaaaagccatgaatcattgacat
ttgaatacatcaagcgttgatttggcaacttagagaaatatttcagagaa
aaggtgtgcagtccaagtgactatcttaattatctgcatcaatcccatta
atttgtggtgtatttcaagctggaacaaaggcccaggaatgaagtgtgct
gttccaatccaaccagaatcatctatgatacccttccctctatcattcca
ggcacaaaagacaataggatggagttgagcccttggggtcttggcatcca
caagacagagaggagaggcctggcagtgctggaagggtgtggaaaatcac
atcattgactagttacggtgaagatttcttgagaatagctgggcagactg
taaagcacacggaaagcaaaattcaaaaagctgactttgaaggtgagttc
caacagctgtctttgtccattttgctgtgctataacaacactagagactg
ggtatcctatgggaaatatagagatttatctcacagatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_112555907_112555995
seq2: B6Ng01-053M21.b_38_128 (reverse)

seq1  TACACACACACACAC--ACACACACACCAACCCAAAGAAGTTACCACATG  48
      |||||||||||||||  |||||||||||||||||||||||||||||||||
seq2  TACACACACACACACAAACACACACACCAACCCAAAGAAGTTACCACATG  50

seq1  TTTAGTAAAGTGGACTTCTGGGTGGGTGTGAAGGGGAATTC  89
      ||||||| | |||||||||||||||||||||||||||||||
seq2  TTTAGTATAATGGACTTCTGGGTGGGTGTGAAGGGGAATTC  91

seq1: chr11_112411586_112412323
seq2: B6Ng01-053M21.g_72_810

seq1  GAATTCTCTCTGTTGCAAGATCGTTTGAGAGTAGAGACCAAAATAACACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCTGTTGCAAGATCGTTTGAGAGTAGAGACCAAAATAACACT  50

seq1  CTCACCACAAACAGTAGGTATCTAAACAAAGTTTGGCATGGAACATCTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCACAAACAGTAGGTATCTAAACAAAGTTTGGCATGGAACATCTTG  100

seq1  GGTGAGATGTTCTGCTAAGTGACCCACTGTTGTGGAGGTTTGTATGTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGATGTTCTGCTAAGTGACCCACTGTTGTGGAGGTTTGTATGTGAG  150

seq1  CATGTGGAATGGGTGCCAAGCAATCTAAGTATTTTCTTTAGCTCTGGATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGGAATGGGTGCCAAGCAATCTAAGTATTTTCTTTAGCTCTGGATC  200

seq1  CTATTCAGAGGGATTTTTTTTCTCTTTCAAAAGCCATGAATCATTGACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCAGAGGGATTTTTTTTCTCTTTCAAAAGCCATGAATCATTGACAT  250

seq1  TTGAATACATCAAGCGTTGATTTGGCAACTTAGAGAAATATTTCAGAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATACATCAAGCGTTGATTTGGCAACTTAGAGAAATATTTCAGAGAA  300

seq1  AAGGTGTGCAGTCCAAGTGACTATCTTAATTATCTGCATCAATCCCATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGTGCAGTCCAAGTGACTATCTTAATTATCTGCATCAATCCCATTA  350

seq1  ATTTGTGGTGTATTTCAAGCTGGAACAAAGGCCCAGGAATGAAGTGTGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTGGTGTATTTCAAGCTGGAACAAAGGCCCAGGAATGAAGTGTGCT  400

seq1  GTTCCAATCCAACCAGAATCATCTATGATACCCTTCCCTCTATCATTCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCAATCCAACCAGAATCATCTATGATACCCTTCCCTCTATCATTCCA  450

seq1  GGCACAAAAGACAATAGGATGGAGTTGAGCCCTTGGGGTCTTGGCATCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACAAAAGACAATAGGATGGAGTTGAGCCCTTGGGGTCTTGGCATCCA  500

seq1  CAAGACAGAGAGGAGAGGCCTGGCAGTGCTGGAAGGGTGTGGAAAATCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACAGAGAGGAGAGGCCTGGCAGTGCTGGAAGGGTGTGGAAAATCAC  550

seq1  ATCATTGACTAGTTACGGTGAAGATTTCTTGAGAATAGCTGGGCAGACTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTGACTAGTTACGGTGAAGATTTCTTGAGAATAGCTGGGCAGACTG  600

seq1  TAAAGCACACGGAAAAGCAAAATTCAAAAAGCTGACTTTGAAGGTGAGTT  650
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TAAAGCACACGG-AAAGCAAAATTCAAAAAGCTGACTTTGAAGGTGAGTT  649

seq1  CCAACAGCTGTCTTTGTCCA-TTTGCTGTTGCTATAACAACACTAGAGAC  699
      |||||||||||||||||||| ||||||| |||||||||||||||||||||
seq2  CCAACAGCTGTCTTTGTCCATTTTGCTG-TGCTATAACAACACTAGAGAC  698

seq1  TGGGTATCCTATGG--AAAATAGAGATTTATCTCACAGATT  738
      ||||||||||||||  || ||||||||||||||||||||||
seq2  TGGGTATCCTATGGGAAATATAGAGATTTATCTCACAGATT  739