BAC Information

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BAC

Clone NameB6Ng01-053N09
Chromosome11 (Build37)
Map Location 63,569,301 - 63,702,206
singlet/doubletdoublet
Overlap geneLOC100041690, LOC654442, LOC668297, Hs3st3b1
Upstream geneZfp286, Trim16, Fbxw10, Fam18b, Cdrt4, Tekt3, Pmp22, LOC433423, LOC100042799
Downstream geneCox10, 2810001G20Rik, EG544785, Hs3st3a1, LOC626959
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-053N09.bB6Ng01-053N09.g
ACCDH876760DH876761
length1,2571,005
definitionDH876760|Mus musculus domesticus DNA, BAC clone: B6Ng01-053N09, 5' end.DH876761|Mus musculus domesticus DNA, BAC clone: B6Ng01-053N09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,569,301 - 63,570,586)(63,701,190 - 63,702,206)
sequence
gaattcacatatataaaatagataaatcttcaaaaaaaaaagatcttcaa
acttgagagggctgtatgtagctatgttttgagggttaggtttctgactg
aagttctatttcaaatagatgtcactattagctaaattaggatgtacagt
gacatcaccagccctatcctgtcctaatcatctggaaaagacttctcaga
gaacaaatatttcagcagctactgggaaagtgggaccaagtcattttgtt
aaacaaattaagtacagaacataacttctgcgaattgttatctttaatgt
aacttcccactcagactagccttctctagacaggagtacaaacgaatttc
agagcaatgggtgccaacccagggattttacacatgctaagcaggtactt
taccactgagccacacctctagcctctcagaagacattttctctgtgttg
aatgacatgaacatggaggaaattattttggaggagataggctcttccag
ctaagagatgtctgaagattgtaccactagttcaagatttctacaaacag
tttggttttatattccatgtttaaagacactgactctaattgtgtctgtc
actgagactctcatccacagacaatgaatctacagatgtctgccaggtgt
atctgcatcatcagttagcacagagctaactgtcactaaagattccagtc
caatagtcaaggagcgctcttctccaaagatggttgttgcctttattctc
agaaaaacacatgaatctacttaggagaaagaacctaagggtcccagatt
ttatgagttaaccattcagttccccagccctgcagtttcacacctctgcg
agctctctcagcatcaacaaaatgccaaagatttgatggggaaatggtgt
taagtctcttgttgtttcaggatttcccaatatgcattaaattaactttg
gggccatgtgaggctggatggtaggaaatcactcattgacacagatggca
gctaatgttccagcagcttgtcaacacccacaaaatcagattgggattag
cactaccttcagagtggtccaccccgatggaaggtttctctgcatacatc
cagcttagcatattatcctggaagccatgacctgaagtcttggtaaccct
tcatcaagaaacctgactgggccgaattacaagcatcaggtcaagtaacg
aatttatcgcttttgttcagttgatcatcacgtggcttggtctcgacttg
agtgaga
gaattcacttaagcagttcattaccctcagtgacatagcacctaggtgca
tttctcccgcctcccttacagggatgtccttatgaccccgactcccctcc
tcctcctctaccctccgtccattattcagctggaagtgtatgcaaacact
tgatccctttcccaggtcccatgtgtcagaggcttgggtgctgctttaaa
aaaaaaatgtgacatctcctttgcataagagggtgccacactcctttctt
cagtcagacagtcatgctatgacacaccaaagagtctcccaggattccat
acataggcagcagcacaagcctaggatgctggatgttgaggcccacaggg
gtcagatggatctcttgacattcagcatttatagaagtgttgctctgtgt
agacccacctagtgttgggcaggaagctcatggcctcagtagagagatct
ggcaagcagcccagcagaggaagagggtgcccagcatgccagccaaaagc
ctctgagtttctagcccatcccagagattatgaaatggtctaggcagtgt
ccacagcaggctttgaaggatgggcctattgggcccaggctgggaaagct
ggctgcgtgcggtactcgaatctgactcttgtgcagcgtcctctgaggta
gtggagtcttagcagagaagtccccagctttgctgctaatatgtagatgg
tactccctgtgcctctgtgttgggaggacactggagggtcctttggctag
tagtggcagttgggataactgtacttagatgacatcatgatatattcagt
taatcttcagtttcttaaaccagaaggcttctacccccaaaggatggtgt
ctgagttagactttcatcaagaatgagtagatggttgaatgactgcatgt
gatcttgcagagcttttttttttttttttggatcttttgggctaacttga
cagattagcaagttacattgaaagagaagaattactgtctttagaactag
tgaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_63569301_63570586
seq2: B6Ng01-053N09.b_43_1299

seq1  GAATTCACATATATAAAATAGATAAATCTTCAAAAAAAAAAGATCTTCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATATATAAAATAGATAAATCTTCAAAAAAAAAAGATCTTCAA  50

seq1  ACTTGAGAGGGCTGTATGTAGCTATGTTTTGAGGGTTAGGTTTCTGACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAGAGGGCTGTATGTAGCTATGTTTTGAGGGTTAGGTTTCTGACTG  100

seq1  AAGTTCTATTTCAAATAGATGTCACTATTAGCTAAATTAGGATGTACAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCTATTTCAAATAGATGTCACTATTAGCTAAATTAGGATGTACAGT  150

seq1  GACATCACCAGCCCTATCCTGTCCTAATCATCTGGAAAAGACTTCTCAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCACCAGCCCTATCCTGTCCTAATCATCTGGAAAAGACTTCTCAGA  200

seq1  GAACAAATATTTCAGCAGCTACTGGGAAAGTGGGACCAAGTCATTTTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAATATTTCAGCAGCTACTGGGAAAGTGGGACCAAGTCATTTTGTT  250

seq1  AAACAAATTAAGTACAGAACATAACTTCTGCGAATTGTTATCTTTAATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAATTAAGTACAGAACATAACTTCTGCGAATTGTTATCTTTAATGT  300

seq1  AACTTCCCACTCAGACTAGCCTTCTCTAGACAGGAGTACAAACGAATTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCCCACTCAGACTAGCCTTCTCTAGACAGGAGTACAAACGAATTTC  350

seq1  AGAGCAATGGGTGCCAACCCAGGGATTTTACACATGCTAAGCAGGTACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAATGGGTGCCAACCCAGGGATTTTACACATGCTAAGCAGGTACTT  400

seq1  TACCACTGAGCCACACCTCTAGCCTCTCAGAAGACATTTTCTCTGTGTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACTGAGCCACACCTCTAGCCTCTCAGAAGACATTTTCTCTGTGTTG  450

seq1  AATGACATGAACATGGAGGAAATTATTTTGGAGGAGATAGGCTCTTCCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACATGAACATGGAGGAAATTATTTTGGAGGAGATAGGCTCTTCCAG  500

seq1  CTAAGAGATGTCTGAAGATTGTACCACTAGTTCAAGATTTCTACAAACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAGATGTCTGAAGATTGTACCACTAGTTCAAGATTTCTACAAACAG  550

seq1  TTTGGTTTTATATTCCATGTTTAAAGACACTGACTCTAATTGTGTCTGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTTTTATATTCCATGTTTAAAGACACTGACTCTAATTGTGTCTGTC  600

seq1  ACTGAGACTCTCATCCACAGACAATGAATCTACAGATGTCTGCCAGGTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGACTCTCATCCACAGACAATGAATCTACAGATGTCTGCCAGGTGT  650

seq1  ATCTGCATCATCAGTTAGCACAGAGCTAACTGTCACTAAAGATTCCAGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCATCATCAGTTAGCACAGAGCTAACTGTCACTAAAGATTCCAGTC  700

seq1  CAATAGTCAAGGAGCGCTCTTCTCCAAAGATGGTTGTTGCCTTTATTCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGTCAAGGAGCGCTCTTCTCCAAAGATGGTTGTTGCCTTTATTCTC  750

seq1  AGAAAAACACATGAATCTACTTAGGAGAAAGAACCTAAGGGTCCCAGATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAACACATGAATCTACTTAGGAGAAAGAACCTAAGGGTCCCAGATT  800

seq1  TTATGAGTTAACCATTCAGTTCCCCAGCCCTGCAGTTTCACACCTCTGCG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAGTTAACCATTCAGTTCCCCAGCCCTGCAGTTTCACACCTCTGCG  850

seq1  AGCTCTCTCAGCATCAACAAAATGCCAAAGATTTGATGGGGAAATGGTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTCTCAGCATCAACAAAATGCCAAAGATTTGATGGGGAAATGGTGT  900

seq1  TAAGTCTCTTGTTGTTTCAGGAATTTCCCAATATGCATTAAATTAACTTT  950
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TAAGTCTCTTGTTGTTTCAGG-ATTTCCCAATATGCATTAAATTAACTTT  949

seq1  GGGGCCATGTGAGGCTGGATGGTAGGAAATCACTCCATTGGACACAGATG  1000
      |||||||||||||||||||||||||||||||||| |||| ||||||||||
seq2  GGGGCCATGTGAGGCTGGATGGTAGGAAATCACT-CATT-GACACAGATG  997

seq1  GCAGCTAATGTTCCCAGCAGC-TGTC-ACACACACAAAATCAGATTGGGA  1048
      |||||||||||| |||||||| |||| |||| ||||||||||||||||||
seq2  GCAGCTAATGTT-CCAGCAGCTTGTCAACACCCACAAAATCAGATTGGGA  1046

seq1  TTAGCACTAACCTTCAGAGTGGTCACACCCCGATGGGATGGTTTCTCTGC  1098
      |||||||| ||||||||||||||| ||||||||| ||| |||||||||||
seq2  TTAGCACT-ACCTTCAGAGTGGTC-CACCCCGAT-GGAAGGTTTCTCTGC  1093

seq1  AATACACACCAAGCTTAGCATAATGTCCCTGAAGCCACATGACCTCGAAG  1148
         | ||| | ||||||||||| | |||  |||||  |||||||| ||| 
seq2  ---ATACATCCAGCTTAGCATATTATCCTGGAAGC--CATGACCT-GAA-  1136

seq1  GTCTTGGGAACACTTCATCAAAGAAATCTGAACTTGGGCCGAAATTACAA  1198
      ||||||| ||| ||||||| |||||| ||||   ||||||| |||||| |
seq2  GTCTTGGTAACCCTTCATC-AAGAAACCTGA--CTGGGCCG-AATTAC-A  1181

seq1  AGCATCAGGTCCACAGTTAGCAGGAATTTATCTGCTTTTGTGTCAAAGGG  1248
      |||||||||||   |||    | ||||||||| |||||||| |||    |
seq2  AGCATCAGGTC--AAGT---AACGAATTTATC-GCTTTTGT-TCA----G  1220

seq1  TTTTGCATCCACCCTGCTTTGGTCT-GACTTGAGTGAGA  1286
      ||   ||||   | ||  ||||||| |||||||||||||
seq2  TTGATCATC--ACGTGGCTTGGTCTCGACTTGAGTGAGA  1257

seq1: chr11_63701190_63702206
seq2: B6Ng01-053N09.g_71_1075 (reverse)

seq1  TCTCACTAGTTTCTAAAGACAGTATATCTTCTCTTTCCATGTAACTTTGC  50
      ||||||||| ||||||||||||||  ||||||||||| ||||||| ||||
seq2  TCTCACTAG-TTCTAAAGACAGTAATTCTTCTCTTTCAATGTAAC-TTGC  48

seq1  TTATCCTGTCAAGTTAGCCCAAAAAGTATCCAAAAAAAAAAAAAAAAAGC  100
      | || |||||||||||||||||||   ||||||||||||||||||||   
seq2  TAAT-CTGTCAAGTTAGCCCAAAA--GATCCAAAAAAAAAAAAAAAA--G  93

seq1  CTCTGCAAAGATCACAATGCAGTCATTTCAACCATCTACTCATTCTTGAT  150
      |||||| |||||||| ||||||||| ||||||||||||||||||||||||
seq2  CTCTGC-AAGATCAC-ATGCAGTCA-TTCAACCATCTACTCATTCTTGAT  140

seq1  GAAAGTCTAACTCAGACACCAATCCTTTGGGGGGTAGAAGCCTTCTGGTT  200
      |||||||||||||||||||| ||||||| |||||||||||||||||||||
seq2  GAAAGTCTAACTCAGACACC-ATCCTTT-GGGGGTAGAAGCCTTCTGGTT  188

seq1  TAAGAAACTGAAGATTAACTGAATATATCATGATGTCATCTAAGTACAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAACTGAAGATTAACTGAATATATCATGATGTCATCTAAGTACAGT  238

seq1  TAT-CCAACTGCCACTAACTAGCCAAAGGACCCTCCAGTGTCCTCCCAAC  299
      ||| |||||||||||| |||||||||||||||||||||||||||||||||
seq2  TATCCCAACTGCCACT-ACTAGCCAAAGGACCCTCCAGTGTCCTCCCAAC  287

seq1  ACAGAGGCACAGGGAGTACCATCTACATATTAGCAGCAAAGCTGGGGACT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGGCACAGGGAGTACCATCTACATATTAGCAGCAAAGCTGGGGACT  337

seq1  TCTCTGCTAAGACTCCACTACCTCAGAGGACGCTGCACAAGAGTCAGATT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGCTAAGACTCCACTACCTCAGAGGACGCTGCACAAGAGTCAGATT  387

seq1  CGAGTACCGCACGCAGCCAGCTTTCCCAGCCTGGGCCCAATAGGCCCATC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGTACCGCACGCAGCCAGCTTTCCCAGCCTGGGCCCAATAGGCCCATC  437

seq1  CTTCAAAGCCTGCTGTGGACACTGCCTAGACCATTTCATAATCTCTGGGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAAGCCTGCTGTGGACACTGCCTAGACCATTTCATAATCTCTGGGA  487

seq1  TGGGCTAGAAACTCAGAGGCTTTTGGCTGGCATGCTGGGCACCCTCTTCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTAGAAACTCAGAGGCTTTTGGCTGGCATGCTGGGCACCCTCTTCC  537

seq1  TCTGCTGGGCTGCTTGCCAGATCTCTCTACTGAGGCCATGAGCTTCCTGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTGGGCTGCTTGCCAGATCTCTCTACTGAGGCCATGAGCTTCCTGC  587

seq1  CCAACACTAGGTGGGTCTACACAGAGCAACACTTCTATAAATGCTGAATG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACACTAGGTGGGTCTACACAGAGCAACACTTCTATAAATGCTGAATG  637

seq1  TCAAGAGATCCATCTGACCCCTGTGGGCCTCAACATCCAGCATCCTAGGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAGATCCATCTGACCCCTGTGGGCCTCAACATCCAGCATCCTAGGC  687

seq1  TTGTGCTGCTGCCTATGTATGGAATCCTGGGAGACTCTTTGGTGTGTCAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCTGCTGCCTATGTATGGAATCCTGGGAGACTCTTTGGTGTGTCAT  737

seq1  AGCATGACTGTCTGACTGAAGAAAGGAGTGTGGCACCCTCTTATGCAAAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGACTGTCTGACTGAAGAAAGGAGTGTGGCACCCTCTTATGCAAAG  787

seq1  GAGATGTCACATTTTTTTTTTAAAGCAGCACCCAAGCCTCTGACACATGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGTCACATTTTTTTTTTAAAGCAGCACCCAAGCCTCTGACACATGG  837

seq1  GACCTGGGAAAGGGATCAAGTGTTTGCATACACTTCCAGCTGAATAATGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGGGAAAGGGATCAAGTGTTTGCATACACTTCCAGCTGAATAATGG  887

seq1  ACGGAGGGTAGAGGAGGAGGAGGGGAGTCGGGGTCATAAGGACATCCCTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGAGGGTAGAGGAGGAGGAGGGGAGTCGGGGTCATAAGGACATCCCTG  937

seq1  TAAGGGAGGCGGGAGAAATGCACCTAGGTGCTATGTCACTGAGGGTAATG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGGAGGCGGGAGAAATGCACCTAGGTGCTATGTCACTGAGGGTAATG  987

seq1  AACTGCTTAAGTGAATTC  1017
      ||||||||||||||||||
seq2  AACTGCTTAAGTGAATTC  1005