BAC Information

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BAC

Clone NameB6Ng01-053P02
Chromosome11 (Build37)
Map Location 103,608,502 - 103,759,766
singlet/doubletdoublet
Overlap geneWnt9b, Wnt3, Nsf, EG667631
Upstream geneAdam11, Gja7, Higd1b, Eftud2, Ccdc103, LOC100042500, Gfap, 3000004C01Rik, C1ql1, Dcakd, Nmt1, Plcd3, Acbd4, Hexim1, Hexim2, Fmnl1, 4933400C05Rik, Map3k14, Arhgap27, 5730442P18Rik, Plekhm1, Lrrc37a, Gm884, Lyzl6, Rprml, Gosr2
Downstream geneArf2, LOC100042645, Crhr1, 4933407P14Rik, Mapt, 1700081L11Rik, Cdc27, Myl4, LOC666721, EG629959, Itgb3, LOC666739, LOC629960, LOC666749, LOC632784
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-053P02.bB6Ng01-053P02.g
ACCDH876838DH876839
length925528
definitionDH876838|Mus musculus domesticus DNA, BAC clone: B6Ng01-053P02, 5' end.DH876839|Mus musculus domesticus DNA, BAC clone: B6Ng01-053P02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,608,502 - 103,609,432)(103,759,233 - 103,759,766)
sequence
gaattcatcaagcaggagaaggaggccactctctaaggcccacccactgc
agccgctgcctccctcaggcataacacaaggacaccttatgaggctgttc
cctatacaggatggagaacacacaaggcctggcttctatcttgcccctca
ccaatttgctgtgtaacaccaagtgaccctctggacctttctggctgttt
ttttttttttaacctacctcagaaattgctttgaggggcctctgagggaa
ggggctttgtgcgggagggatttatagacatctgctctgctttgtaaagt
caccatggccacccactgaaccaggctgtaggcagcaaaagccactgctt
gctccctgtggcttgggagggggacacgtgggatctgaaaaatggggata
agatgtgaccttttttgaagcagggggttggtcattcctcactctgaagt
ctttgactgcaaagatcccaacgagattggtaccaaaattgctgtcacct
gttctcctgatctctgaatttcctttcatcaggaaataaaagaaagcatt
tcatgttatacttagaaatgagacttcaaaggcgagtgacctaaggaggg
ataagcacactgcttcatggtctcactgaagtgtggatggctggaagcaa
acactggtgctaggctaggaaacctgggccacctaagtcacatgagagtt
tgccctgatgagtcctgcccgttccctgagcccaaacagttaacagcatg
aagcctgtatgtgtatctttttcagctctttcaggaaggaccccaaaatc
aagctctctctctctctctctctctctctctctcttccaaactaccatct
cccctgttactttcaagattgtccctgctccccagccccaaatctgttcc
cttccagataccagccagtgtggtc
tacattgagaagagactcttaggtgcagagcctttgactgtcggtggtca
ccgccatcccacgagctgtgtgacctctcacgtctctctccactactaca
aatgacgtgccttccattgtgaatcttattcaggcaccagtcatggctgt
ggtgtgcttaggagaagcaagattgatggtcaggattatcacctgcatca
gagattctcgacagccgctcttctttgtctggctgcagcaggctgaccac
acgtgatagaaggtggccatggaagtggtgggatattgaagctctgtgtg
cgcaatgggtggggatagcttcaagggggtactgtcagtctttagagtga
tagatcacagtttacagctgtagttcagtgacagagcccttcccatatcg
attctaaaaagaaaatcaatgttttaaaaataaataaaacaggttgaact
tatgttgaaattattctgctctttgaaaatcatgaaagaatttggagaga
aatatgatttggaaggacagatagaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_103608502_103609432
seq2: B6Ng01-053P02.b_39_963

seq1  GAATTCATCAAGCAGGAGAAGGAGGCCACTCTCTAAGGCCCACCCACTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCAAGCAGGAGAAGGAGGCCACTCTCTAAGGCCCACCCACTGC  50

seq1  AGCCGCTGCCTCCCTCAGGCATAACACAAGGACACCTTATGAGGCTGTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCGCTGCCTCCCTCAGGCATAACACAAGGACACCTTATGAGGCTGTTC  100

seq1  CCTATACAGGATGGAGAACACACAAGGCCTGGCTTCTATCTTGCCCCTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATACAGGATGGAGAACACACAAGGCCTGGCTTCTATCTTGCCCCTCA  150

seq1  CCAATTTGCTGTGTAACACCAAGTGACCCTCTGGACCTTTCTGGCTGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTTGCTGTGTAACACCAAGTGACCCTCTGGACCTTTCTGGCTGTTT  200

seq1  TTTTTTTTTTAACCTACCTCAGAAATTGCTTTGAGGGGCCTCTGAGGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTAACCTACCTCAGAAATTGCTTTGAGGGGCCTCTGAGGGAA  250

seq1  GGGGCTTTGTGCGGGAGGGATTTATAGACATCTGCTCTGCTTTGTAAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTTTGTGCGGGAGGGATTTATAGACATCTGCTCTGCTTTGTAAAGT  300

seq1  CACCATGGCCACCCACTGAACCAGGCTGTAGGCAGCAAAAGCCACTGCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATGGCCACCCACTGAACCAGGCTGTAGGCAGCAAAAGCCACTGCTT  350

seq1  GCTCCCTGTGGCTTGGGAGGGGGACACGTGGGATCTGAAAAATGGGGATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCTGTGGCTTGGGAGGGGGACACGTGGGATCTGAAAAATGGGGATA  400

seq1  AGATGTGACCTTTTTTGAAGCAGGGGGTTGGTCATTCCTCACTCTGAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTGACCTTTTTTGAAGCAGGGGGTTGGTCATTCCTCACTCTGAAGT  450

seq1  CTTTGACTGCAAAGATCCCAACGAGATTGGTACCAAAATTGCTGTCACCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGACTGCAAAGATCCCAACGAGATTGGTACCAAAATTGCTGTCACCT  500

seq1  GTTCTCCTGATCTCTGAATTTCCTTTCATCAGGAAATAAAAGAAAGCATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCCTGATCTCTGAATTTCCTTTCATCAGGAAATAAAAGAAAGCATT  550

seq1  TCATGTTATACTTAGAAATGAGACTTCAAAGGCGAGTGACCTAAGGAGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTTATACTTAGAAATGAGACTTCAAAGGCGAGTGACCTAAGGAGGG  600

seq1  ATAAGCACACTGCTTCATGGTCTCACTGAAGTGTGGATGGCTGGAAGCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCACACTGCTTCATGGTCTCACTGAAGTGTGGATGGCTGGAAGCAA  650

seq1  ACACTGGTGCTAGGCTAGGAAACCTGGGCCACCTAAGTCACATGAGAGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGGTGCTAGGCTAGGAAACCTGGGCCACCTAAGTCACATGAGAGTT  700

seq1  TGCCCTGATGAGTCCTGCCCGTTCCCTGAGCCCAAACAGTTAACAGCATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTGATGAGTCCTGCCCGTTCCCTGAGCCCAAACAGTTAACAGCATG  750

seq1  AAGCCTGTATGTGTATC-TTTTCAGCTCTTTCAAGGAAGGACCCCAAAAT  799
      ||||||||||||||||| |||||||||||||| |||||||||||||||||
seq2  AAGCCTGTATGTGTATCTTTTTCAGCTCTTTC-AGGAAGGACCCCAAAAT  799

seq1  CAAGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCATAACTAACC  849
      |||||||||||||||||||||||||||||||||||| |||| |||| |||
seq2  CAAGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT-TCCA-AACT-ACC  846

seq1  ATCTCCCCTGTTACTTTCAAGATTGTCCCTTGCTCCCCAGGCCCCAAATC  899
      ||||||||||||||||||||||||||||| ||||||||| ||||||||||
seq2  ATCTCCCCTGTTACTTTCAAGATTGTCCC-TGCTCCCCA-GCCCCAAATC  894

seq1  TGTTCCCTTCCAGCATACCAGCCAGTGTGGTC  931
      ||||||||||||| ||||||||||||||||||
seq2  TGTTCCCTTCCAG-ATACCAGCCAGTGTGGTC  925

seq1: chr11_103759233_103759766
seq2: B6Ng01-053P02.g_68_601 (reverse)

seq1  ATTTCTGTCTGTCCTTCCAAATCATATTTCTCTCCAAATTCTTTCATGAT  50
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTATCTGTCCTTCCAAATCATATTTCTCTCCAAATTCTTTCATGAT  50

seq1  TTTCAAAGAGCAGAATTATTTCAACATAAGTTCAACCTGTTTTATTTTTT  100
      |||||||||||||||| |||||||||||||||||||||||||||||| ||
seq2  TTTCAAAGAGCAGAATAATTTCAACATAAGTTCAACCTGTTTTATTTATT  100

seq1  TTTAAAACATTGATTTTCTTTTTAGAATCGATATGGGAAGGGCTCTGTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAACATTGATTTTCTTTTTAGAATCGATATGGGAAGGGCTCTGTCA  150

seq1  CTGAACTACAGCTGTAAACTGTGATCTCTCACTCTAAAGACTGACAGTAC  200
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CTGAACTACAGCTGTAAACTGTGATCTATCACTCTAAAGACTGACAGTAC  200

seq1  CCCCTTGAAGCTATCCCCACCCATTGCGCACACAGAGCTTCAATATCCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTGAAGCTATCCCCACCCATTGCGCACACAGAGCTTCAATATCCCA  250

seq1  CCACTTCCATGGCCACCTTCTATCACGTGTGGTCAGCCTGCTGCAGCCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTCCATGGCCACCTTCTATCACGTGTGGTCAGCCTGCTGCAGCCAG  300

seq1  ACAAAGAAGAGCGGCTGTCGAGAATCTCTGATGCAGGTGATAATCCTGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGAAGAGCGGCTGTCGAGAATCTCTGATGCAGGTGATAATCCTGAC  350

seq1  CATCTATCTTGCTTCTCCTAAGCACACCACAGCCATGACTGGTGCCTGAA  400
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAATCTTGCTTCTCCTAAGCACACCACAGCCATGACTGGTGCCTGAA  400

seq1  TAAGATTCACAATGGAAGGCACGTCATTTGTAGTAGTGGAGAGAGACGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATTCACAATGGAAGGCACGTCATTTGTAGTAGTGGAGAGAGACGTG  450

seq1  AGAGGTCACACAGCTCGTGGGATGGCGGTGACCACCGACAGTCAAAGGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTCACACAGCTCGTGGGATGGCGGTGACCACCGACAGTCAAAGGCT  500

seq1  CTGCACCTAAGAGTCTCTTCTCACTGTAGAATTC  534
      ||||||||||||||||||||||| ||||||||||
seq2  CTGCACCTAAGAGTCTCTTCTCAATGTAGAATTC  534